ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63d21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY625683.1| Triticum aestivum NAC domain transcription factor (NAC2) mRNA, complete cds Length = 1450 Score = 303 bits (153), Expect = 3e-79 Identities = 251/283 (88%), Gaps = 16/283 (5%) Strand = Plus / Minus Query: 244 cctccctcccgtttcctatgctgtatttacactgcaccgcgatctcgctcgctcgcccgc 303 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1207 cctccctcccgtttcctatgctgtatttacactgcaccgcggtctcgctcgctcgc---- 1152 Query: 304 ggcgaagaagtcatccattccgcttctgtcgatc----ggagtctgacggtctgatggtc 359 ||| |||||||| |||||||| |||||||||||| || ||||||||||| | Sbjct: 1151 ggccaagaagtcgtccattccacttctgtcgatctcggggtctctgacggtct------c 1098 Query: 360 tgtctttgctgtgtgcttagaacggggctggcatgccgccggagccgggctggctgcccc 419 |||||||||| || ||||||||||||| ||||||||||||| |||||||||||| || | Sbjct: 1097 tgtctttgctctg--cttagaacggggccggcatgccgccggcgccgggctggctcccgc 1040 Query: 420 ggaccctgggggaggcgaagaaggaggagtagagcaggtcgtncncgggcggcatcatgt 479 |||| | |||||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 1039 ggacacggggggaggcgaagagggaggagtagagcaggtcgtccccgggcggcatcatgt 980 Query: 480 cgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 979 cgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 937 Score = 188 bits (95), Expect = 1e-44 Identities = 178/202 (88%), Gaps = 14/202 (6%) Strand = Plus / Minus Query: 1 ttggttgatttctactgaagnagaaggaagaaacagnagctacatatgtatttggtcggt 60 |||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||| Sbjct: 1432 ttggttgatttctactgaag-agaaggaaagaacag-agctacatatgtattcggtcggt 1375 Query: 61 cgattctcattctactactgaggagtgagaagagaagagagctacatccgcattgagagt 120 ||||||| |||| ||||||||||||||| | |||||||||||||||||||||| Sbjct: 1374 cgattct------actagtgaggagtgagaagaaa---gagctacatccgcattgagagt 1324 Query: 121 acag---agtaagaacgaaagaatcaacccagccggccaggccccggcgccgggctctcc 177 ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1323 acaaggtagtaagaacaaaagaatcaacccagccggccaggccccggcgccgggctctcc 1264 Query: 178 atgtacagcaacacgccccggc 199 ||||||| | ||||||||||| Sbjct: 1263 atgtacaacggcacgccccggc 1242
>gb|AY103772.1| Zea mays PCO133091 mRNA sequence Length = 1141 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgag 519 ||||||| ||||||||||||| ||||||||| |||||||||||||||||||| Sbjct: 1009 ggcggcagcatgtcgaggccgctgtacatgccttggatgtcgtcgtagctgag 957
>ref|XM_470088.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1016 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 922 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 867
>gb|AY596808.1| Oryza sativa (japonica cultivar-group) NAC transcription factor (NAC) mRNA, complete cds Length = 1264 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 916 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 861
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 33863278 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 33863223
>gb|AC135594.4| Oryza sativa chromosome 3 BAC OSJNBa0024F18 genomic sequence, complete sequence Length = 159795 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 9962 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 10017
>gb|DQ394702.1| Oryza sativa (japonica cultivar-group) stress-induced transcription factor NAC1 (snac1) mRNA, complete cds Length = 1290 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 933 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 878
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 33953750 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 33953695
>dbj|AK104551.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-E06, full insert sequence Length = 1271 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 936 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 881
>dbj|AK104712.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H04, full insert sequence Length = 1271 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 936 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 881
>dbj|AK099245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116P10, full insert sequence Length = 1263 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 937 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 882
>dbj|AK067690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120D02, full insert sequence Length = 1296 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 467 ggcggcatcatgtcgaggccgttgtacatgctctggatgtcgtcgtagctgaggtc 522 ||||||| ||||||||||||| ||||||||| |||||| ||||||||||| ||||| Sbjct: 939 ggcggcagcatgtcgaggccgctgtacatgccctggatatcgtcgtagctcaggtc 884
>gb|DQ132799.1| Lagenorhynchus albirostris dopamine D4 receptor (DRD4) gene, partial cds Length = 2703 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 191 cgccccggcgccgccgccctcaccacgc 218 ||||||||| |||||||||||||||||| Sbjct: 1829 cgccccggccccgccgccctcaccacgc 1856
>emb|AL160169.12| Human DNA sequence from clone RP11-405C6 on chromosome 9 Contains the 3' end of the gene for a novel protein (KIAA1993), the 5' end of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351) and a CpG island, complete sequence Length = 124025 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 150 ccggccaggccccggcgccgggc 172 ||||||||||||||||||||||| Sbjct: 31481 ccggccaggccccggcgccgggc 31459
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 80 gaggagtgagaagagaagagag 101 |||||||||||||||||||||| Sbjct: 27205 gaggagtgagaagagaagagag 27184
>ref|XM_545684.2| PREDICTED: Canis familiaris hypothetical LOC488567 (LOC488567), mRNA Length = 1138 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 407 ggctggctgccccggaccctgg 428 |||||||||||||||||||||| Sbjct: 802 ggctggctgccccggaccctgg 823
>gb|AC122025.3| Mus musculus BAC clone RP24-388G8 from 12, complete sequence Length = 202612 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 429 gggaggcgaagaaggaggagta 450 |||||||||||||||||||||| Sbjct: 30213 gggaggcgaagaaggaggagta 30192
>gb|AY366085.1| Zea mays cultivar B73 PGP1 (pgp1) gene, complete cds Length = 7139 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 427 gggggaggcgaagaaggaggag 448 |||||||||||||||||||||| Sbjct: 338 gggggaggcgaagaaggaggag 317
>emb|Z97192.2|HS29C18 Human DNA sequence from clone RP1-29C18 on chromosome 22, complete sequence Length = 143701 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 410 tggctgccccggaccctgggggaggc 435 ||||||| |||||||||||||||||| Sbjct: 98118 tggctgctccggaccctgggggaggc 98093
>gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome 12, complete sequence Length = 200974 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 429 gggaggcgaagaaggaggagta 450 |||||||||||||||||||||| Sbjct: 103832 gggaggcgaagaaggaggagta 103811
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 gaggagtgagaagagaagagag 101 |||||||||||||||||||||| Sbjct: 6859646 gaggagtgagaagagaagagag 6859667
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 gaggagtgagaagagaagagag 101 |||||||||||||||||||||| Sbjct: 6926113 gaggagtgagaagagaagagag 6926134
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 473 atcatgtcgaggccgttgtaca 494 |||||||||||||||||||||| Sbjct: 1366395 atcatgtcgaggccgttgtaca 1366374
>dbj|AB024688.1| Mus musculus Six4 gene, exon 1 Length = 1535 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 429 gggaggcgaagaaggaggagta 450 |||||||||||||||||||||| Sbjct: 1021 gggaggcgaagaaggaggagta 1042
>gb|AC100893.13| Mus musculus chromosome 8, clone RP23-68I8, complete sequence Length = 253420 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gtctgtctttgctgtgtgctt 377 ||||||||||||||||||||| Sbjct: 42280 gtctgtctttgctgtgtgctt 42300
>gb|AC129331.4| Mus musculus BAC clone RP23-75C8 from chromosome 8, complete sequence Length = 257765 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gtctgtctttgctgtgtgctt 377 ||||||||||||||||||||| Sbjct: 198062 gtctgtctttgctgtgtgctt 198082
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 cccagccggccaggccccggc 165 ||||||||||||||||||||| Sbjct: 353745 cccagccggccaggccccggc 353765
>ref|XM_681091.1| PREDICTED: Danio rerio similar to CD11-1 (LOC557935), mRNA Length = 3147 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 gtctgtctttgctgtgtgctt 377 ||||||||||||||||||||| Sbjct: 916 gtctgtctttgctgtgtgctt 896
>gb|AC007330.6|AC007330 Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR30G11, complete sequence Length = 166854 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gtctgacggtctgatggtctg 361 ||||||||||||||||||||| Sbjct: 147408 gtctgacggtctgatggtctg 147388
>gb|AC007413.5|AC007413 Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR01L01, complete sequence Length = 160301 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gtctgacggtctgatggtctg 361 ||||||||||||||||||||| Sbjct: 102490 gtctgacggtctgatggtctg 102470
>gb|AC092609.2| Homo sapiens BAC clone RP11-160A16 from 4, complete sequence Length = 150751 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ggagtgagaagagaagagagc 102 ||||||||||||||||||||| Sbjct: 27297 ggagtgagaagagaagagagc 27277
>gb|AF297331.1|AF297331 Drosophila melanogaster Mef2 gene, promoter region Length = 939 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 gtctgacggtctgatggtctg 361 ||||||||||||||||||||| Sbjct: 281 gtctgacggtctgatggtctg 301
>gb|AE003831.3| Drosophila melanogaster chromosome 2R, section 19 of 73 of the complete sequence Length = 275390 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gtctgacggtctgatggtctg 361 ||||||||||||||||||||| Sbjct: 88336 gtctgacggtctgatggtctg 88316
>gb|AC004061.1|AC004061 Homo sapiens chromosome 4 clone B299F15 map 4q21, complete sequence Length = 117101 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ggagtgagaagagaagagagc 102 ||||||||||||||||||||| Sbjct: 113694 ggagtgagaagagaagagagc 113674
>ref|XM_482906.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1317 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 952 ccggcgccgccgccatcaccacgc 975
>gb|AC120865.7| Mus musculus chromosome 5, clone RP23-88L6, complete sequence Length = 235287 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 ctttgctgtgtgcttagaac 382 |||||||||||||||||||| Sbjct: 169596 ctttgctgtgtgcttagaac 169577
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 gccggagccgggctggctgc 416 |||||||||||||||||||| Sbjct: 933819 gccggagccgggctggctgc 933838
>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08, complete sequence Length = 143955 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tactgaggagtgagaagaga 95 |||||||||||||||||||| Sbjct: 102255 tactgaggagtgagaagaga 102236
>gb|AY605898.1| Homo sapiens haplotype 1 alpha2C adrenergic receptor (ADRA2C) gene, complete cds Length = 4625 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcaacacgccccggcgccgccgcc 208 ||||| |||||||||||||||||| Sbjct: 3541 gcaacgcgccccggcgccgccgcc 3518
>gb|AY657546.1| Synthetic construct Peudomonas aeruginosa clone FLH040966.01F PA3379 gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 293 cgctcgcccgcggcgaagaagtcatcca 320 |||||||| |||||||||||| |||||| Sbjct: 572 cgctcgccggcggcgaagaaggcatcca 545
>gb|AY455666.1| Homo sapiens adrenergic receptor alpha 2C (ADRA2C) gene, complete cds Length = 1377 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcaacacgccccggcgccgccgcc 208 ||||| |||||||||||||||||| Sbjct: 904 gcaacgcgccccggcgccgccgcc 881
>ref|NM_000683.3| Homo sapiens adrenergic, alpha-2C-, receptor (ADRA2C), mRNA Length = 1958 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcaacacgccccggcgccgccgcc 208 ||||| |||||||||||||||||| Sbjct: 942 gcaacgcgccccggcgccgccgcc 919
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 cggcgccgccgccctcacca 215 |||||||||||||||||||| Sbjct: 2932994 cggcgccgccgccctcacca 2933013
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cccggcgccgccgccctcac 213 |||||||||||||||||||| Sbjct: 856481 cccggcgccgccgccctcac 856500
>ref|XM_963270.1| PREDICTED: Tribolium castaneum similar to Hunchback protein (LOC656763), mRNA Length = 1575 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ggaggcgaagaaggaggagt 449 |||||||||||||||||||| Sbjct: 1356 ggaggcgaagaaggaggagt 1375
>emb|CR590957.1| full-length cDNA clone CS0DI021YC24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1600 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcaacacgccccggcgccgccgcc 208 ||||| |||||||||||||||||| Sbjct: 1163 gcaacgcgccccggcgccgccgcc 1140
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 7215540 ccggcgccgccgccatcaccacgc 7215517
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ggagtgagaagagaagagag 101 |||||||||||||||||||| Sbjct: 15476271 ggagtgagaagagaagagag 15476252
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 23257234 ccggcgccgccgccatcaccacgc 23257257
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ccggcgccgccgccctcacc 214 |||||||||||||||||||| Sbjct: 19799840 ccggcgccgccgccctcacc 19799821 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 5134862 ccggcgccgccgccatcaccacgc 5134839
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tactgaggagtgagaagaga 95 |||||||||||||||||||| Sbjct: 28800516 tactgaggagtgagaagaga 28800535 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tactgaggagtgagaagaga 95 |||||||||||||||||||| Sbjct: 8381211 tactgaggagtgagaagaga 8381192
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 37558399 ccggcgccgccgccatcaccacgc 37558422 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ggagtgagaagagaagagag 101 |||||||||||||||||||| Sbjct: 28900716 ggagtgagaagagaagagag 28900735
>gb|AC141928.2| Homo sapiens fosmid clone XXFOS-85085A9 from 4, complete sequence Length = 40040 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcaacacgccccggcgccgccgcc 208 ||||| |||||||||||||||||| Sbjct: 13557 gcaacgcgccccggcgccgccgcc 13534
>emb|BX829533.1|CNS0A08R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZD11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 841 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cgaagaaggaggagtagagc 454 |||||||||||||||||||| Sbjct: 669 cgaagaaggaggagtagagc 688
>gb|AF280400.1|AF280400 Homo sapiens alpha 2C adrenergic receptor variant (ADRA2C) gene, complete cds Length = 1377 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcaacacgccccggcgccgccgcc 208 ||||| |||||||||||||||||| Sbjct: 904 gcaacgcgccccggcgccgccgcc 881
>gb|AF280399.1|AF280399 Homo sapiens alpha 2C adrenergic receptor (ADRA2C) gene, complete cds Length = 1389 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcaacacgccccggcgccgccgcc 208 ||||| |||||||||||||||||| Sbjct: 904 gcaacgcgccccggcgccgccgcc 881
>gb|AE004759.1| Pseudomonas aeruginosa PAO1, section 320 of 529 of the complete genome Length = 14309 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 293 cgctcgcccgcggcgaagaagtcatcca 320 |||||||| |||||||||||| |||||| Sbjct: 9563 cgctcgccggcggcgaagaaggcatcca 9590
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 18873 ccggcgccgccgccatcaccacgc 18896
>dbj|AP003254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454A11 Length = 152240 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ggagtgagaagagaagagag 101 |||||||||||||||||||| Sbjct: 13339 ggagtgagaagagaagagag 13358
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0013B04 Length = 141319 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 56585 ccggcgccgccgccatcaccacgc 56608
>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1147_D11 Length = 138444 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 93900 ccggcgccgccgccatcaccacgc 93877
>emb|BX005106.5| Zebrafish DNA sequence from clone DKEY-188I13, complete sequence Length = 216863 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 tctcgctcgctcgcccgcgg 305 |||||||||||||||||||| Sbjct: 159106 tctcgctcgctcgcccgcgg 159125
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0551A03 Length = 173027 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ccggcgccgccgccctcacc 214 |||||||||||||||||||| Sbjct: 66885 ccggcgccgccgccctcacc 66866
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 1584 ccggcgccgccgccatcaccacgc 1561
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ggagtgagaagagaagagag 101 |||||||||||||||||||| Sbjct: 125563 ggagtgagaagagaagagag 125544
>gb|AC107641.11| Mus musculus chromosome 7, clone RP23-54G8, complete sequence Length = 164725 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aagagaagagagctacatcc 109 |||||||||||||||||||| Sbjct: 140488 aagagaagagagctacatcc 140469
>dbj|AK109530.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B05, full insert sequence Length = 804 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccggcgccgccgccctcacc 214 |||||||||||||||||||| Sbjct: 403 ccggcgccgccgccctcacc 422
>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13, complete sequence Length = 143298 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ccggcgccgccgccctcaccacgc 218 |||||||||||||| ||||||||| Sbjct: 79277 ccggcgccgccgccatcaccacgc 79254
>gb|AC000114.1|HSAC000114 Human PAC clone DJ527C21 from Xq23, complete sequence Length = 172151 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gagtgagaagagaagagagc 102 |||||||||||||||||||| Sbjct: 151475 gagtgagaagagaagagagc 151456
>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035N21, complete sequence Length = 128331 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tactgaggagtgagaagaga 95 |||||||||||||||||||| Sbjct: 72951 tactgaggagtgagaagaga 72932
>emb|X91618.1|TCHB T.castaneum hunchback gene Length = 7560 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ggaggcgaagaaggaggagt 449 |||||||||||||||||||| Sbjct: 6756 ggaggcgaagaaggaggagt 6775
>dbj|D13538.1|HUMA2CIIA Human alpha2CII-adrenergic receptor gene, complete cds Length = 1382 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcaacacgccccggcgccgccgcc 208 ||||| |||||||||||||||||| Sbjct: 906 gcaacgcgccccggcgccgccgcc 883 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,414,905 Number of Sequences: 3902068 Number of extensions: 4414905 Number of successful extensions: 197096 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 195700 Number of HSP's gapped (non-prelim): 1391 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
