ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1INADL_HUMAN (Q8NI35) InaD-like protein (Inadl protein) (hINADL) ... 29 3.5
2YPZ2_METTF (P29572) Hypothetical 33.1 kDa protein (ORF2') 29 3.5

>INADL_HUMAN (Q8NI35) InaD-like protein (Inadl protein) (hINADL)|
           (Pals1-associated tight junction protein) (Protein
           associated to tight junctions)
          Length = 1801

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 282 KQQKXDEPXIQVHESFHXQLNENEHPHVXCD*FEYMTAR 166
           K++  DEP + + +SFH Q  E E      +  E++T R
Sbjct: 822 KEELVDEPFLDLGKSFHSQQKEIEQSKEAWEMHEFLTPR 860



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>YPZ2_METTF (P29572) Hypothetical 33.1 kDa protein (ORF2')|
          Length = 284

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 23  YFLH-XNMGED-VHXNVLRGDIRDSHHGEDFREVXNAGXHELLQRTFYRLLAVIYS 184
           YFL   N+G   V  ++LR DI DS H    R+      ++ LQR +Y L + + S
Sbjct: 78  YFLELSNLGNPPVRVDILRWDIEDSRHSIQGRD-----DNQNLQRMYYHLFSNVIS 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,619,461
Number of Sequences: 219361
Number of extensions: 385435
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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