ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YKN1_SCHPO (Q9HDX4) Putative transporter B1A11.01 28 9.6
2ADRB2_MERUN (O70431) Beta-2 adrenergic receptor (Beta-2 adrenoce... 28 9.6

>YKN1_SCHPO (Q9HDX4) Putative transporter B1A11.01|
          Length = 495

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -1

Query: 176 CCSLSWSFRLLVLGVTLASQWIFACMHGKFRTLYGSEYECRMLFRWEYLSIVGNTIY 6
           C  L+W  R+ ++   + S     CM+G    +      C      E L ++G T+Y
Sbjct: 28  CDPLTWPIRIRIINTIIISFMTMLCMYGSSVFMPSIPELCEKFGEPETLVVLGATLY 84



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>ADRB2_MERUN (O70431) Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2|
           adrenoreceptor) (Fragment)
          Length = 251

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
 Frame = -2

Query: 337 SFGPFWS--YSCLSTYLKKREDESITVAAA*EDDLCRCSLWFQ*NITRN-XRSII*SVVV 167
           +FG FW   ++ +         E++ V A            +Q  +T+N  R +I  V +
Sbjct: 26  NFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYIAITAPFKYQSLLTKNKARVVILMVWI 85

Query: 166 YHGHLGYLCLESHWLVNGYLHACMGNLEHYMAVNMNVVCCFVGNTC 29
             G   +L ++ HW               Y A N   + C+   TC
Sbjct: 86  VSGLTSFLPIQMHW---------------YRATNKEAITCYTNETC 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,939,388
Number of Sequences: 219361
Number of extensions: 1184901
Number of successful extensions: 2592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2592
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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