ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62o14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1063 bits (536), Expect = 0.0 Identities = 580/589 (98%), Gaps = 5/589 (0%) Strand = Plus / Minus Query: 1 atttagngntatattaacaaaacatgcccagcaatcgcttggntgcgatgcggacttag- 59 |||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1683 atttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagt 1624 Query: 60 gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1623 gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt 1564 Query: 120 -cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 178 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1563 tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 1504 Query: 179 a-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtggg 237 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1503 atcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtggg 1444 Query: 238 tgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagc 296 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1443 tgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagc 1384 Query: 297 atcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtc 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1383 atcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtc 1324 Query: 357 ctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctg 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1323 ctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctg 1264 Query: 417 ctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattcc 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1263 ctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattcc 1204 Query: 477 ggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1203 ggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 1144 Query: 537 aaagtcaattggattgtcctgggaaggtgtcgacgatcttgacgacaga 585 |||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct: 1143 aaagtcaa-tggattgtcctgggaaggtgtcgacgatctttacgacaga 1096
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 856 bits (432), Expect = 0.0 Identities = 545/579 (94%), Gaps = 8/579 (1%) Strand = Plus / Minus Query: 10 tatattaacaaaacatgcccagcaatcgcttggntgcgatgcgg-acttaggta-----g 63 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | Sbjct: 745 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaagg 686 Query: 64 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 123 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 685 ataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 627 Query: 124 gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacggg 183 ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || || Sbjct: 626 actcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacagg 567 Query: 184 caaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgta 243 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 caaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgta 507 Query: 244 tggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcaccc 303 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 506 tggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcaccc 447 Query: 304 agagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 agagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcc 387 Query: 364 tggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaag 423 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 386 tggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaag 327 Query: 424 gtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagag 483 ||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 326 gtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtagag 267 Query: 484 ccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtca 543 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 266 gtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcg 207 Query: 544 attggattgtcctgggaaggtgtcgacgatcttgacgac 582 | ||||||||||||||||||||||||||||||||||||| Sbjct: 206 a-tggattgtcctgggaaggtgtcgacgatcttgacgac 169
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 856 bits (432), Expect = 0.0 Identities = 545/579 (94%), Gaps = 8/579 (1%) Strand = Plus / Minus Query: 10 tatattaacaaaacatgcccagcaatcgcttggntgcgatgcgg-acttaggta-----g 63 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | Sbjct: 1595 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaagg 1536 Query: 64 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 123 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1535 ataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 1477 Query: 124 gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacggg 183 ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || || Sbjct: 1476 actcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacagg 1417 Query: 184 caaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgta 243 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1416 caaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgta 1357 Query: 244 tggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcaccc 303 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1356 tggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcaccc 1297 Query: 304 agagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1296 agagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcc 1237 Query: 364 tggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaag 423 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 1236 tggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaag 1177 Query: 424 gtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagag 483 ||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 1176 gtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtagag 1117 Query: 484 ccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtca 543 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1116 gtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcg 1057 Query: 544 attggattgtcctgggaaggtgtcgacgatcttgacgac 582 | ||||||||||||||||||||||||||||||||||||| Sbjct: 1056 a-tggattgtcctgggaaggtgtcgacgatcttgacgac 1019
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Minus Query: 208 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 268 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 328 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 388 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 448 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 508 tcgtacacccgagcacgcagagcaccgaaaaagtc 542 ||||||||||||||||||||||||||||||||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 402 bits (203), Expect = e-109 Identities = 209/212 (98%) Strand = Plus / Minus Query: 1 atttagngntatattaacaaaacatgcccagcaatcgcttggntgcgatgcggacttagg 60 |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 7734 atttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagg 7675 Query: 61 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7674 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 7615 Query: 121 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7614 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcac 7555 Query: 181 gggcaaagtaccttgctgtgctcctttacctc 212 |||||||||||||||||||||||||||||||| Sbjct: 7554 gggcaaagtaccttgctgtgctcctttacctc 7523 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 334 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 393 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 394 ttctcgactgtcatctttggctgctcgaa 422 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873 Score = 79.8 bits (40), Expect = 9e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 546 tggattgtcctgggaaggtgtcgacgatcttgacgacaga 585 |||||||||||||||||||||||||||||||||||||||| Sbjct: 6877 tggattgtcctgggaaggtgtcgacgatcttgacgacaga 6838 Score = 73.8 bits (37), Expect = 6e-10 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 483 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 542 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 543 aattggattgtcctgggaaggtgtc 567 | |||| || || ||||||||||| Sbjct: 3752 ga-tggactgccccgggaaggtgtc 3729
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 654 bits (330), Expect = 0.0 Identities = 462/504 (91%), Gaps = 3/504 (0%) Strand = Plus / Minus Query: 82 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 141 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468 Query: 142 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 201 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408 Query: 202 tcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccg 261 ||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||| Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttctaaccg 1350 Query: 262 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 321 |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct: 1349 tagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatg 1290 Query: 322 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 381 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 1289 taagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtggccg 1230 Query: 382 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 441 ||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||||||| Sbjct: 1229 tactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtcccgc 1170 Query: 442 gagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacc 501 |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 1169 gagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcgcacc 1110 Query: 502 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattggattgtcctgggaa 561 ||| ||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||| Sbjct: 1109 tcaacgtcgtacacccgagcacgcagagcaccgaagaagtcga-tggactgtcctgggaa 1051 Query: 562 ggtgtcgacgatcttgacgacaga 585 ||||||||||||||||||||||| Sbjct: 1050 ngtgtcgacgatcttgacgacaga 1027
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 626 bits (316), Expect = e-176 Identities = 326/328 (99%), Gaps = 1/328 (0%) Strand = Plus / Minus Query: 258 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 318 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 378 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 438 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 498 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattggattgtcctg 557 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaa-tggattgtcctg 869 Query: 558 ggaaggtgtcgacgatcttgacgacaga 585 ||||||||||||||||||| |||||||| Sbjct: 868 ggaaggtgtcgacgatctttacgacaga 841 Score = 398 bits (201), Expect = e-108 Identities = 207/210 (98%) Strand = Plus / Minus Query: 1 atttagngntatattaacaaaacatgcccagcaatcgcttggntgcgatgcggacttagg 60 |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1374 atttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagg 1315 Query: 61 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1314 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 1255 Query: 121 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1254 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcac 1195 Query: 181 gggcaaagtaccttgctgtgctcctttacc 210 |||||||||||||||||||||||||||||| Sbjct: 1194 gggcaaagtaccttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-145 Identities = 296/307 (96%) Strand = Plus / Minus Query: 236 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 295 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 296 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 356 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 416 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 475 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 476 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 535 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 536 aaaagtc 542 ||||||| Sbjct: 8 aaaagtc 2
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 436 bits (220), Expect = e-119 Identities = 302/328 (92%), Gaps = 1/328 (0%) Strand = Plus / Minus Query: 258 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 317 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 318 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 377 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 378 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 437 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 438 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 497 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 498 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattggattgtcctg 557 |||||| |||||||||||||||||||||||||||||||| ||||| | |||| ||||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcga-tggactgtcctg 1065 Query: 558 ggaaggtgtcgacgatcttgacgacaga 585 |||||||||||||||||||||||||||| Sbjct: 1064 ggaaggtgtcgacgatcttgacgacaga 1037 Score = 176 bits (89), Expect = 5e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 82 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 141 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 142 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 201 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 202 tcctttacc 210 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 151 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 207 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 208 acctcctcct 217 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 257 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 316 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 317 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 376 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 377 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 437 cccgcgagttcaccagcctcttgccaatgttctc 470 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 1022 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 1021 ggattggcctgggaagctgtcgacgatcttgacga 987
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 151 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 207 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 208 acctcctcct 217 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 257 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 316 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 317 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 376 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 377 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 437 cccgcgagttcaccagcctcttgccaatgttctc 470 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 1060 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 1059 ggattggcctgggaagctgtcgacgatcttgacga 1025
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 151 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 207 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 208 acctcctcct 217 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 257 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 316 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 317 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 376 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 377 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 437 cccgcgagttcaccagcctcttgccaatgttctc 470 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 1059 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 1058 ggattggcctgggaagctgtcgacgatcttgacga 1024
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 151 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 207 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 208 acctcctcct 217 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 257 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 316 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 317 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 376 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 377 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 437 cccgcgagttcaccagcctcttgccaatgttctc 470 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 843 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 842 ggattggcctgggaagctgtcgacgatcttgacga 808
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 151 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 207 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 208 acctcctcct 217 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 257 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 316 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 317 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 376 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 377 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 437 cccgcgagttcaccagcctcttgccaatgttctc 470 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 1064 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 1063 ggattggcctgggaagctgtcgacgatcttgacga 1029
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 254 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 313 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 314 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 373 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 374 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 433 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 434 cgtcccgcgagttcaccagcctcttgccaatgttctc 470 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 546 tggattgtcctgggaaggtgtcgacgatcttgacga 581 ||||||| ||||||||| |||||||||||||||||| Sbjct: 108689 tggattggcctgggaagctgtcgacgatcttgacga 108724 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 109 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 168 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 169 accttccggcacggg 183 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 536 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 442 gagttcaccagcctcttgccaatgttctc 470 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 254 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 313 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 314 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 373 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 374 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 433 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 434 cgtcccgcgagttcaccagcctcttgccaatgttctc 470 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 546 tggattgtcctgggaaggtgtcgacgatcttgacga 581 ||||||| ||||||||| |||||||||||||||||| Sbjct: 30566 tggattggcctgggaagctgtcgacgatcttgacga 30601 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 109 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 168 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 169 accttccggcacggg 183 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 536 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 442 gagttcaccagcctcttgccaatgttctc 470 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 257 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 316 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 317 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 376 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 377 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 437 cccgcgagttcaccagcctcttgccaatgttctc 470 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 1028 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 1027 ggattggcctgggaagctgtcgacgatcttgacga 993
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 259 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 318 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 319 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 378 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 379 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 439 cgcgagttcaccagcctcttgccaatgttctc 470 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 1023 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 1022 ggattggcctgggaagctgtcgacgatcttgacga 988
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 254 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 313 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 314 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 373 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 374 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 433 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 434 cgtcccgcgagttcaccagcctcttgccaatgttctc 470 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 546 tggattgtcctgggaaggtgtcgacgatcttgacga 581 ||||||| ||||||||| |||||||||||||||||| Sbjct: 28303828 tggattggcctgggaagctgtcgacgatcttgacga 28303863 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 109 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 168 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 169 accttccggcacggg 183 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 536 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 442 gagttcaccagcctcttgccaatgttctc 470 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 254 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 313 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 314 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 373 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 374 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 433 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 434 cgtcccgcgagttcaccagcctcttgccaatgttctc 470 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 546 tggattgtcctgggaaggtgtcgacgatcttgacga 581 ||||||| ||||||||| |||||||||||||||||| Sbjct: 28286277 tggattggcctgggaagctgtcgacgatcttgacga 28286312 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 109 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 168 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 169 accttccggcacggg 183 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 536 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 442 gagttcaccagcctcttgccaatgttctc 470 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 259 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 318 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 319 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 378 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 379 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 439 cgcgagttcaccagcctcttgccaatgttctc 470 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 1058 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 1057 ggattggcctgggaagctgtcgacgatcttgacga 1023
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 255 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 314 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 315 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 374 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 375 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 434 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 435 gtcccgcgagttcaccagcctcttgcc 461 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 101 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 160 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 161 tcggtgcaaccttc 174 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076 Score = 61.9 bits (31), Expect = 2e-06 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 489 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattgg 548 |||||| | |||||| |||||||| |||| || | ||| |||||||| |||||||| || Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaat-gg 715 Query: 549 attgtcctgggaaggtgtcgacgatcttgacgaca 583 |||| || |||||||||||||||| ||||| |||| Sbjct: 714 attggccggggaaggtgtcgacgagcttgatgaca 680
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 257 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 316 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 317 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 376 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 377 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 437 cccgcgagttcaccagcctcttgccaatgttctc 470 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 277 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 276 ggattggcctgggaagctgtcgacgatcttgacga 242
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 257 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 316 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 317 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 376 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 377 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 437 cccgcgagttcaccagcctcttgccaatgttctc 470 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 151 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 207 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 208 acctcctcct 217 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 85.7 bits (43), Expect = 1e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 487 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatt 546 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || || Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgat- 1071 Query: 547 ggattgtcctgggaaggtgtcgacgatcttgacga 581 |||||| ||||||||| |||||||||||||||||| Sbjct: 1070 ggattggcctgggaagctgtcgacgatcttgacga 1036
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 97 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 156 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 157 ttggtcggtgcaaccttccggcacgggca 185 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 262 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 321 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 322 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 381 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 382 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 441 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 442 gagttcaccagcctcttgcc 461 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 101 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 160 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 161 tcggtgcaaccttc 174 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232 Score = 61.9 bits (31), Expect = 2e-06 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 489 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattgg 548 |||||| | |||||| |||||||| |||| || | ||| |||||||| |||||||| || Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaat-gg 909 Query: 549 attgtcctgggaaggtgtcgacgatcttgacgaca 583 |||| || |||||||||||||||| ||||| |||| Sbjct: 908 attggccggggaaggtgtcgacgagcttgatgaca 874
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 115 bits (58), Expect = 2e-22 Identities = 191/234 (81%), Gaps = 1/234 (0%) Strand = Plus / Minus Query: 334 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 393 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 394 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 453 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 454 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 513 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 514 acccgagcacgcagagcaccgaaaaagtcaattggattgtcctgggaaggtgtc 567 ||||| || ||||| || ||||| ||||| | |||| || || ||||||||||| Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcga-tggactgccccgggaaggtgtc 1010
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 6e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 255 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 314 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 315 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 374 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 375 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 434 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 435 gtcccgcgagttcaccagcctctt 458 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 101 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 160 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 161 tcggtgcaaccttc 174 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377 Score = 61.9 bits (31), Expect = 2e-06 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 489 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattgg 548 |||||| | |||||| |||||||| |||| || | ||| |||||||| |||||||| || Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaat-gg 1016 Query: 549 attgtcctgggaaggtgtcgacgatcttgacgaca 583 |||| || |||||||||||||||| ||||| |||| Sbjct: 1015 attggccggggaaggtgtcgacgagcttgatgaca 981
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 262 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 321 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 322 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 381 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 382 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 441 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 442 gagttcaccagcctctt 458 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 101 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 160 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 161 tcggtgcaaccttc 174 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202 Score = 61.9 bits (31), Expect = 2e-06 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 489 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattgg 548 |||||| | |||||| |||||||| |||| || | ||| |||||||| |||||||| || Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaat-gg 879 Query: 549 attgtcctgggaaggtgtcgacgatcttgacgaca 583 |||| || |||||||||||||||| ||||| |||| Sbjct: 878 attggccggggaaggtgtcgacgagcttgatgaca 844
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 263 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 322 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 323 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 382 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 383 actctagcagcttctcgactgtcatctttggctgctcgaa 422 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760 Score = 48.1 bits (24), Expect = 0.033 Identities = 61/72 (84%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 499 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattggattgtcctgg 558 ||||| |||||||| ||||| |||||||| || ||||| ||||| || ||| || || || Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgat-ggactggccagg 625 Query: 559 gaaggtgtcgac 570 |||||||||||| Sbjct: 624 gaaggtgtcgac 613
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 263 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 322 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 323 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 382 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 383 actctagcagcttctcgactgtcatctttggctgctcgaa 422 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 40.1 bits (20), Expect = 8.0 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 499 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattggattgtcctgg 558 ||||| |||||||| ||||| |||||||| || ||||| || || || ||| || || || Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgat-ggactggccagg 1020 Query: 559 gaaggtgtcgac 570 |||||||||||| Sbjct: 1019 gaaggtgtcgac 1008
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 263 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 322 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 323 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 382 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 383 actctagcagcttctcgactgtcatctttggctgctcgaa 422 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 334 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 393 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 394 ttctcgactgtcatctttggctgctcgaa 422 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304 Score = 73.8 bits (37), Expect = 6e-10 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 483 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 542 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 543 aattggattgtcctgggaaggtgtc 567 | |||| || || ||||||||||| Sbjct: 1183 ga-tggactgccccgggaaggtgtc 1160
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 280 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 339 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 340 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 395 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 91 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 150 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 151 ggcattttggtcggtgcaaccttccggcacgggca 185 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 291 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 350 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 351 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 410 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 411 tggctgctcgaa 422 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 525 cagagcaccgaaaaagtcaattggattgtcctgggaaggtgtc 567 |||||||||||||||||||| ||||||| || ||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaa-tggattggcccgggaaggtgtc 1072
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 525 cagagcaccgaaaaagtcaattggattgtcctgggaaggtgtcgacgatcttgac 579 |||||||||||| || ||||| | ||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatag-attgtccagggaagctatcgacgatcttgac 1073
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.13 Identities = 54/63 (85%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 505 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattggattgtcctgggaaggt 564 ||||||||||| || |||||||| || ||||| ||||||| |||| || || |||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaa-tggactggccggggaaggt 2665 Query: 565 gtc 567 ||| Sbjct: 2664 gtc 2662
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 46.1 bits (23), Expect = 0.13 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand = Plus / Minus Query: 488 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattg 547 ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| |||| Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102 Query: 548 gattgtcctgggaaggtgtcgac 570 | |||||||||||||||||||| Sbjct: 1101 -actgtcctgggaaggtgtcgac 1080
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 46.1 bits (23), Expect = 0.13 Identities = 54/63 (85%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 505 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaattggattgtcctgggaaggt 564 ||||||||||| || |||||||| || ||||| ||||||| |||| || || |||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaa-tggactggccggggaaggt 975 Query: 565 gtc 567 ||| Sbjct: 974 gtc 972
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.51 Identities = 43/50 (86%) Strand = Plus / Minus Query: 283 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 332 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 296 catcacccagagctgcctggct 317 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 557 gggaaggtgtcgacgatcttg 577 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 aaacatcagatattaaaagtg 87 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 atgcagcaagagatggtgggt 238 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 334 agctgcacacgcttgacattgtcctgctc 362 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 aaacatcagatattaaaagtg 87 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 aaacatcagatattaaaagtg 87 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cctttacctcctcctatgca 222 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 catcacccagagctgcctggctca 319 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cctttacctcctcctatgca 222 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 8.0 Identities = 68/84 (80%) Strand = Plus / Minus Query: 292 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 351 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 352 ttgtcctgctcctggacgagcatg 375 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cctttacctcctcctatgca 222 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gtcagcaagctgcacacgct 346 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tcagatattaaaagtggcat 91 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tcagatattaaaagtggcat 91 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tcagatattaaaagtggcat 91 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 catcacccagagctgcctggctca 319 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 548 gattgtcctgggaaggtgtcgacgatcttgac 579 ||||| || |||||||||||||||| |||||| Sbjct: 1146 gattggccagggaaggtgtcgacgagcttgac 1115
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ttgacattgtcctgctcctg 365 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 catcacccagagctgcctggctca 319 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 100 ggtgtaaaggcagctgccgtcgtcgctc 127 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cctttacctcctcctatgca 222 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 catcacccagagctgcctggctca 319 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 catcacccagagctgcctggctca 319 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 catcacccagagctgcctggctca 319 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tggcatgcttaaaaggtgta 105 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ttgacattgtcctgctcctg 365 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 catcacccagagctgcctggctca 319 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 cttgctgtgctcctttacctcctc 215 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 cctttacctcctcctatgca 222 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 atcagatattaaaagtggcatgct 94 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,955,221 Number of Sequences: 3902068 Number of extensions: 3955221 Number of successful extensions: 71629 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 71297 Number of HSP's gapped (non-prelim): 265 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
