ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
2gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genom... 115 2e-22
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 2e-22
4gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genom... 115 2e-22
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
6emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in ... 44 0.61
7ref|XM_824020.1| Trypanosoma brucei TREU927 hypothetical protein... 42 2.4
8ref|XM_663191.1| Cryptosporidium hominis TU502 U4/U6-associated ... 42 2.4
9emb|BX663608.26| Zebrafish DNA sequence from clone DKEY-223I19 i... 42 2.4
10emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 42 2.4
11gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromoso... 42 2.4
12gb|AY903064.1| Cyanea annaskala clone CHE6 internal transcribed ... 42 2.4
13emb|AL806523.14| Mouse DNA sequence from clone RP23-423O7 on chr... 42 2.4
14emb|AL627206.20| Mouse DNA sequence from clone RP23-206H22 on ch... 42 2.4
15ref|NM_188505.1| Oryza sativa (japonica cultivar-group), Ozsa817... 40 9.5
16ref|XM_630650.1| Dictyostelium discoideum hypothetical protein (... 40 9.5
17ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-exp... 40 9.5
18ref|XM_477844.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.5
19gb|AY500863.1| Penaeus monodon microsatellite PM3854 sequence 40 9.5
20gb|AC131185.4| Mus musculus BAC clone RP23-402H1 from chromosome... 40 9.5
21ref|XM_652639.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 9.5
22gb|AF261274.1| Oryza sativa beta-expansin (EXPB6) mRNA, complete... 40 9.5
23emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in l... 40 9.5
24emb|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segme... 40 9.5
25emb|AL162494.10| Human DNA sequence from clone RP11-417I19 on ch... 40 9.5
26gb|AC131886.5| Rattus norvegicus 4 BAC CH230-53A1 (Children's Ho... 40 9.5
27emb|Z46971.2|LMLAPGN Leishmania mexicana MBAP gene for membrane-... 40 9.5
28emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome;... 40 9.5
29emb|AJ884948.1| Chlamydomonas reinhardtii partial mRNA for gamma... 40 9.5
30emb|BX470109.3| Mouse DNA sequence from clone RP23-59I3 on chrom... 40 9.5
31gb|AE012309.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 9.5
32gb|AC080153.4| Homo sapiens chromosome , clone RP13-492I13, comp... 40 9.5
33gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 gen... 40 9.5
34gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complet... 40 9.5
35gb|AC013545.8| Homo sapiens chromosome 8, clone RP11-414D17, com... 40 9.5
36gb|AC018868.4| Homo sapiens BAC clone RP11-83J16 from 15, comple... 40 9.5
37gb|AF332093.1|AF332093 White spot syndrome virus, complete genome 40 9.5
38emb|BX323987.12| Zebrafish DNA sequence from clone DKEY-125E8, c... 40 9.5
39gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 9.5
40gb|AC023949.6|AC023949 Homo sapiens chromosome 8, clone RP11-711... 40 9.5
41dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
42dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
44gb|AC114546.14| Homo sapiens chromosome 15, clone RP11-463I20, c... 40 9.5
45dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
46dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
47dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
48dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
49gb|AF440570.1| Shrimp white spot syndrome virus, complete genome 40 9.5
50dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.5
51dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.5
52dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.5
53gb|AY734036.1| Macaca mulatta isolate rq2317-19p13.13 MLV-derive... 40 9.5
54dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.5
55gb|AC078889.20| Homo sapiens 12 BAC RP11-335I12 (Roswell Park Ca... 40 9.5
56gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, comple... 40 9.5
57gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.5
58gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B... 40 9.5
59gb|AF035794.1|AF035794 Homo sapiens rheumatoid factor RF-IP18 mR... 40 9.5
60gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, comple... 40 9.5
61emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chro... 40 9.5
62emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 40 9.5
63dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 9.5 
>dbj|AK069807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028O14, full
            insert sequence
          Length = 2020

 Score =  159 bits (80), Expect = 1e-35
 Identities = 155/180 (86%)
 Strand = Plus / Minus

                                                                        
Query: 516  cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatcgagatgctcttctccg 575
            ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||  |
Sbjct: 1567 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttctggg 1508

                                                                        
Query: 576  tcccgacaacacccatggtaagagcactggcgaagatgacggaggagaggatgaagacga 635
            | || ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 1507 ttccaacaacacccattgtaagagcactcgcgaagatgacagaggataggatgaagacaa 1448

                                                                        
Query: 636  tcagcgacgctctcttgagcacaagcacgatcttccggaccaagcactggccccagaatc 695
            |||| || |||| |||||||||  ||||||  |||||||||||| |||||||||||||||
Sbjct: 1447 tcagagatgctcgcttgagcacgtgcacgagtttccggaccaaggactggccccagaatc 1388



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 339  cgtgtgcttgcaggttagcgaggagctaac 368
            |||| |||||||||||||||||| ||||||
Sbjct: 1725 cgtgcgcttgcaggttagcgaggcgctaac 1696



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 443  gaggtgaggtcaattaggtattggcctgg 471
            ||||||||||||||||||| ||| |||||
Sbjct: 1641 gaggtgaggtcaattaggtgttgacctgg 1613



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 346  ttgcaggttagcgaggagctaaca 369
            |||||||||||| |||||||||||
Sbjct: 1796 ttgcaggttagccaggagctaaca 1773
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>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete
             sequence
          Length = 129440

 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                         
Query: 586   acccatggtaagagcactggcgaagatgacggaggagaggatgaagacgatcagcgacgc 645
             |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct: 99586 acccattgtaagagcactcgcgaagatgacagaggataggatgaagacaatcagagatgc 99645

                                                               
Query: 646   tctcttgagcacaagcacgatcttccggaccaagcactggccccagaatc 695
             || |||||||||  ||||||  |||||||||||| |||||||||||||||
Sbjct: 99646 tcgcttgagcacgtgcacgagtttccggaccaaggactggccccagaatc 99695



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 516   cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatcgagatgctcttct 572
             ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||
Sbjct: 99225 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttct 99281



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 339   cgtgtgcttgcaggttagcgaggagctaac 368
             |||| |||||||||||||||||| ||||||
Sbjct: 99067 cgtgcgcttgcaggttagcgaggcgctaac 99096



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 443   gaggtgaggtcaattaggtattggcctgg 471
             ||||||||||||||||||| ||| |||||
Sbjct: 99151 gaggtgaggtcaattaggtgttgacctgg 99179



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 346   ttgcaggttagcgaggagctaaca 369
             |||||||||||| |||||||||||
Sbjct: 98996 ttgcaggttagccaggagctaaca 99019
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                            
Query: 586      acccatggtaagagcactggcgaagatgacggaggagaggatgaagacgatcagcgacgc 645
                |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct: 29267719 acccattgtaagagcactcgcgaagatgacagaggataggatgaagacaatcagagatgc 29267778

                                                                  
Query: 646      tctcttgagcacaagcacgatcttccggaccaagcactggccccagaatc 695
                || |||||||||  ||||||  |||||||||||| |||||||||||||||
Sbjct: 29267779 tcgcttgagcacgtgcacgagtttccggaccaaggactggccccagaatc 29267828



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 516      cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatcgagatgctcttct 572
                ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||
Sbjct: 29267358 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttct 29267414



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 339      cgtgtgcttgcaggttagcgaggagctaac 368
                |||| |||||||||||||||||| ||||||
Sbjct: 29267200 cgtgcgcttgcaggttagcgaggcgctaac 29267229



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 443      gaggtgaggtcaattaggtattggcctgg 471
                ||||||||||||||||||| ||| |||||
Sbjct: 29267284 gaggtgaggtcaattaggtgttgacctgg 29267312



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 346      ttgcaggttagcgaggagctaaca 369
                |||||||||||| |||||||||||
Sbjct: 29267129 ttgcaggttagccaggagctaaca 29267152
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>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete
             sequence
          Length = 139788

 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                         
Query: 586   acccatggtaagagcactggcgaagatgacggaggagaggatgaagacgatcagcgacgc 645
             |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct: 88281 acccattgtaagagcactcgcgaagatgacagaggataggatgaagacaatcagagatgc 88222

                                                               
Query: 646   tctcttgagcacaagcacgatcttccggaccaagcactggccccagaatc 695
             || |||||||||  ||||||  |||||||||||| |||||||||||||||
Sbjct: 88221 tcgcttgagcacgtgcacgagtttccggaccaaggactggccccagaatc 88172



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 516   cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatcgagatgctcttct 572
             ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||
Sbjct: 88642 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttct 88586



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 339   cgtgtgcttgcaggttagcgaggagctaac 368
             |||| |||||||||||||||||| ||||||
Sbjct: 88800 cgtgcgcttgcaggttagcgaggcgctaac 88771



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 443   gaggtgaggtcaattaggtattggcctgg 471
             ||||||||||||||||||| ||| |||||
Sbjct: 88716 gaggtgaggtcaattaggtgttgacctgg 88688



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 346   ttgcaggttagcgaggagctaaca 369
             |||||||||||| |||||||||||
Sbjct: 88871 ttgcaggttagccaggagctaaca 88848
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                            
Query: 586      acccatggtaagagcactggcgaagatgacggaggagaggatgaagacgatcagcgacgc 645
                |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct: 29359147 acccattgtaagagcactcgcgaagatgacagaggataggatgaagacaatcagagatgc 29359206

                                                                  
Query: 646      tctcttgagcacaagcacgatcttccggaccaagcactggccccagaatc 695
                || |||||||||  ||||||  |||||||||||| |||||||||||||||
Sbjct: 29359207 tcgcttgagcacgtgcacgagtttccggaccaaggactggccccagaatc 29359256



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 516      cgcagaagctgaggaaccccatgtattcgtgcttgttgatcatcgagatgctcttct 572
                ||||||||  ||||||||||||||| || || |||||||||||   |||||||||||
Sbjct: 29358786 cgcagaagtcgaggaaccccatgtactcatggttgttgatcatgctgatgctcttct 29358842



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 339      cgtgtgcttgcaggttagcgaggagctaac 368
                |||| |||||||||||||||||| ||||||
Sbjct: 29358628 cgtgcgcttgcaggttagcgaggcgctaac 29358657



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 443      gaggtgaggtcaattaggtattggcctgg 471
                ||||||||||||||||||| ||| |||||
Sbjct: 29358712 gaggtgaggtcaattaggtgttgacctgg 29358740



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 346      ttgcaggttagcgaggagctaaca 369
                |||||||||||| |||||||||||
Sbjct: 29358557 ttgcaggttagccaggagctaaca 29358580
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>emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in linkage group 11,
             complete sequence
          Length = 124598

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 300   tgctaccactactactgctgct 321
             ||||||||||||||||||||||
Sbjct: 42925 tgctaccactactactgctgct 42946



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   tgctaccactactactgctgctac 323
             |||||| |||||||||||||||||
Sbjct: 42946 tgctactactactactgctgctac 42969
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>ref|XM_824020.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.2260)
            partial mRNA
          Length = 1818

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 302  ctaccactactactgctgctacggttcct 330
            |||||||  ||||||||||||||||||||
Sbjct: 1433 ctaccacggctactgctgctacggttcct 1405
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>ref|XM_663191.1| Cryptosporidium hominis TU502 U4/U6-associated RNA splicing
            factor-related (Chro.80603) partial mRNA
          Length = 6513

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 603  tggcgaagatgacggaggaga 623
            |||||||||||||||||||||
Sbjct: 2238 tggcgaagatgacggaggaga 2258
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>emb|BX663608.26| Zebrafish DNA sequence from clone DKEY-223I19 in linkage group 7,
             complete sequence
          Length = 190528

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 299   atgctaccactactactgctgctac 323
             ||||||| |||||||||||||||||
Sbjct: 16591 atgctactactactactgctgctac 16615
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 504     ggttggtttacccgcagaagc 524
               |||||||||||||||||||||
Sbjct: 3143861 ggttggtttacccgcagaagc 3143841
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>gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromosome unknown, complete
             sequence
          Length = 209915

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 396   tttatttttgtatccttgaactgaa 420
             |||||||||||||||||||| ||||
Sbjct: 82843 tttatttttgtatccttgaattgaa 82819
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>gb|AY903064.1| Cyanea annaskala clone CHE6 internal transcribed spacer 1, partial
           sequence
          Length = 333

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 300 tgctaccactactactgctgctacg 324
           |||||||||||||||||||| ||||
Sbjct: 62  tgctaccactactactgctggtacg 38
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>emb|AL806523.14| Mouse DNA sequence from clone RP23-423O7 on chromosome 4, complete
              sequence
          Length = 217762

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 223    cacacacacgacacgacacag 243
              |||||||||||||||||||||
Sbjct: 196067 cacacacacgacacgacacag 196087
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>emb|AL627206.20| Mouse DNA sequence from clone RP23-206H22 on chromosome 4, complete
              sequence
          Length = 158781

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 301    gctaccactactactgctgct 321
              |||||||||||||||||||||
Sbjct: 106290 gctaccactactactgctgct 106310
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>ref|NM_188505.1| Oryza sativa (japonica cultivar-group), Ozsa8174 predicted mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gcacacacacgacacgacac 241
           ||||||||||||||||||||
Sbjct: 167 gcacacacacgacacgacac 186
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>ref|XM_630650.1| Dictyostelium discoideum hypothetical protein (DDB0219565), partial
            mRNA
          Length = 8055

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 300  tgctaccactactactgctgctac 323
            |||||| |||||||||||||||||
Sbjct: 5563 tgctactactactactgctgctac 5540
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>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6
           (OSJNBb0014I11.3), mRNA
          Length = 1240

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 ctaccactactactgctgct 321
           ||||||||||||||||||||
Sbjct: 15  ctaccactactactgctgct 34
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>ref|XM_477844.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 264

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 544 gtgcttgttgatcatcgaga 563
           ||||||||||||||||||||
Sbjct: 120 gtgcttgttgatcatcgaga 101
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>gb|AY500863.1| Penaeus monodon microsatellite PM3854 sequence
          Length = 909

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 cacacacacgacacgacaca 242
           ||||||||||||||||||||
Sbjct: 377 cacacacacgacacgacaca 358
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>gb|AC131185.4| Mus musculus BAC clone RP23-402H1 from chromosome 19, complete sequence
          Length = 208584

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    gcagcaagcagccaatttgg 45
             ||||||||||||||||||||
Sbjct: 27582 gcagcaagcagccaatttgg 27601
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>ref|XM_652639.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0127.2), mRNA
          Length = 1335

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 554 atcatcgagatgctcttctc 573
           ||||||||||||||||||||
Sbjct: 130 atcatcgagatgctcttctc 149
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>gb|AF261274.1| Oryza sativa beta-expansin (EXPB6) mRNA, complete cds
          Length = 1250

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 ctaccactactactgctgct 321
           ||||||||||||||||||||
Sbjct: 8   ctaccactactactgctgct 27
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>emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in linkage group 1,
             complete sequence
          Length = 80060

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   tgctaccactactactgctgctac 323
             |||||| |||||||||||||||||
Sbjct: 43554 tgctactactactactgctgctac 43577



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   tgctaccactactactgctgctac 323
             |||||| |||||||||||||||||
Sbjct: 43137 tgctactactactactgctgctac 43160
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>emb|AJ248286.2|CNSPAX04 Pyrococcus abyssi complete genome; segment 4/6
          Length = 287130

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 345    cttgcaggttagcgaggagctaac 368
              ||||||||||||||||||| ||||
Sbjct: 153902 cttgcaggttagcgaggagataac 153879
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>emb|AL162494.10| Human DNA sequence from clone RP11-417I19 on chromosome 13, complete
             sequence
          Length = 77808

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   gcatgaatgatgctaccact 309
             ||||||||||||||||||||
Sbjct: 43602 gcatgaatgatgctaccact 43583
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>gb|AC131886.5| Rattus norvegicus 4 BAC CH230-53A1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 222634

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   tgctaccactactactgctgctac 323
             |||||| |||||||||||||||||
Sbjct: 24250 tgctactactactactgctgctac 24273
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>emb|Z46971.2|LMLAPGN Leishmania mexicana MBAP gene for membrane-bound acid phosphatase
          Length = 6824

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 305  ccactactactgctgctacggttc 328
            ||||||||||||||||||| ||||
Sbjct: 4522 ccactactactgctgctactgttc 4545
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>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7
          Length = 349823

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 617    gaggagaggatgaagacgatcagc 640
              ||||||||||||||| ||||||||
Sbjct: 178609 gaggagaggatgaagccgatcagc 178586
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>emb|AJ884948.1| Chlamydomonas reinhardtii partial mRNA for gamma-tocopherol
            methyltransferase
          Length = 1573

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 300  tgctaccactactactgctgctac 323
            |||||||||||| |||||||||||
Sbjct: 1099 tgctaccactaccactgctgctac 1076
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>emb|BX470109.3| Mouse DNA sequence from clone RP23-59I3 on chromosome 4, complete
              sequence
          Length = 228869

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    ctaccactactactgctgct 321
              ||||||||||||||||||||
Sbjct: 186605 ctaccactactactgctgct 186586
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>gb|AE012309.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 217
            of 460 of the complete genome
          Length = 11551

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  gctacggttccttcgccggg 338
            ||||||||||||||||||||
Sbjct: 8366 gctacggttccttcgccggg 8347
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>gb|AC080153.4| Homo sapiens chromosome , clone RP13-492I13, complete sequence
          Length = 55176

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 299   atgctaccactactactgctgcta 322
             |||||| |||||||||||||||||
Sbjct: 12539 atgctagcactactactgctgcta 12516
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>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
             sequence
          Length = 135510

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctaccactactactgctgct 321
             ||||||||||||||||||||
Sbjct: 21873 ctaccactactactgctgct 21892
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>gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complete sequence
          Length = 126750

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 609   agatgacggaggagaggatgaaga 632
             |||||| |||||||||||||||||
Sbjct: 66099 agatgagggaggagaggatgaaga 66076
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>gb|AC013545.8| Homo sapiens chromosome 8, clone RP11-414D17, complete sequence
          Length = 200208

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    ggagtggggagaggtgaggt 452
              ||||||||||||||||||||
Sbjct: 151217 ggagtggggagaggtgaggt 151236
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>gb|AC018868.4| Homo sapiens BAC clone RP11-83J16 from 15, complete sequence
          Length = 162100

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 299    atgctaccactactactgctgcta 322
              |||||| |||||||||||||||||
Sbjct: 148330 atgctagcactactactgctgcta 148307
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>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome
          Length = 305107

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 300   tgctaccactactactgctgctac 323
             |||||| |||||||||||||||||
Sbjct: 44235 tgctactactactactgctgctac 44212
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>emb|BX323987.12| Zebrafish DNA sequence from clone DKEY-125E8, complete sequence
          Length = 164299

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   tgctaccactactactgctgctac 323
             |||||||||| |||||||||||||
Sbjct: 18657 tgctaccactcctactgctgctac 18680
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 319     gctacggttccttcgccggg 338
               ||||||||||||||||||||
Sbjct: 2573588 gctacggttccttcgccggg 2573607
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>gb|AC023949.6|AC023949 Homo sapiens chromosome 8, clone RP11-711B6, complete sequence
          Length = 191296

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ggagtggggagaggtgaggt 452
              ||||||||||||||||||||
Sbjct: 140825 ggagtggggagaggtgaggt 140806
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      ctaccactactactgctgct 321
                ||||||||||||||||||||
Sbjct: 21312486 ctaccactactactgctgct 21312467
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 346      ttgcaggttagcgaggagctaaca 369
                |||||||||||| |||||||||||
Sbjct: 20126263 ttgcaggttagctaggagctaaca 20126240
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     gcacacacacgacacgacac 241
               ||||||||||||||||||||
Sbjct: 6648476 gcacacacacgacacgacac 6648457
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>gb|AC114546.14| Homo sapiens chromosome 15, clone RP11-463I20, complete sequence
          Length = 86106

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 299   atgctaccactactactgctgcta 322
             |||||| |||||||||||||||||
Sbjct: 12336 atgctagcactactactgctgcta 12313
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>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0443E05
          Length = 176935

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 gcacacacacgacacgacac 241
           ||||||||||||||||||||
Sbjct: 628 gcacacacacgacacgacac 609
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>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483F08
          Length = 148985

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    gcacacacacgacacgacac 241
              ||||||||||||||||||||
Sbjct: 128647 gcacacacacgacacgacac 128628
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>dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1372_D12
          Length = 179898

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 346   ttgcaggttagcgaggagctaaca 369
             |||||||||||| |||||||||||
Sbjct: 28651 ttgcaggttagctaggagctaaca 28628
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>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1657_A07
          Length = 125217

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 346   ttgcaggttagcgaggagctaaca 369
             |||||||||||| |||||||||||
Sbjct: 90866 ttgcaggttagctaggagctaaca 90843
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>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome
          Length = 307287

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 300   tgctaccactactactgctgctac 323
             |||||| |||||||||||||||||
Sbjct: 77817 tgctactactactactgctgctac 77794
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>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full
           insert sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 ctaccactactactgctgct 321
           ||||||||||||||||||||
Sbjct: 28  ctaccactactactgctgct 47
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>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full
           insert sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 ctaccactactactgctgct 321
           ||||||||||||||||||||
Sbjct: 28  ctaccactactactgctgct 47
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>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full
           insert sequence
          Length = 1263

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 ctaccactactactgctgct 321
           ||||||||||||||||||||
Sbjct: 34  ctaccactactactgctgct 53
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>gb|AY734036.1| Macaca mulatta isolate rq2317-19p13.13 MLV-derived vector proviral
           integration site
          Length = 271

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 618 aggagaggatgaagacgatc 637
           ||||||||||||||||||||
Sbjct: 82  aggagaggatgaagacgatc 63
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>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full
           insert sequence
          Length = 1259

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 ctaccactactactgctgct 321
           ||||||||||||||||||||
Sbjct: 28  ctaccactactactgctgct 47
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>gb|AC078889.20| Homo sapiens 12 BAC RP11-335I12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163992

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 54     ctgatatatttacagcacccaatacaaa 81
              ||||||||||  ||||||||||||||||
Sbjct: 124825 ctgatatattcccagcacccaatacaaa 124852
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>gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, complete sequence
          Length = 135249

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 101   ctagctagcaaatggagctagcta 124
             ||||||||| ||||||||||||||
Sbjct: 61856 ctagctagctaatggagctagcta 61879
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      ctaccactactactgctgct 321
                ||||||||||||||||||||
Sbjct: 21323750 ctaccactactactgctgct 21323731
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>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence
          Length = 186314

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   gcagcaagcagccaatttgg 45
            ||||||||||||||||||||
Sbjct: 3492 gcagcaagcagccaatttgg 3473
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>gb|AF035794.1|AF035794 Homo sapiens rheumatoid factor RF-IP18 mRNA, partial cds
          Length = 294

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 tgatgctaccactactactg 316
           ||||||||||||||||||||
Sbjct: 172 tgatgctaccactactactg 153
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>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence
          Length = 185283

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     gcagcaagcagccaatttgg 45
              ||||||||||||||||||||
Sbjct: 114259 gcagcaagcagccaatttgg 114278
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>emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chromosome 4, complete
              sequence
          Length = 184644

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     agctagctagcaaatggagc 118
              ||||||||||||||||||||
Sbjct: 179675 agctagctagcaaatggagc 179656
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>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
              sequence
          Length = 240977

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    ctaccactactactgctgct 321
              ||||||||||||||||||||
Sbjct: 174590 ctaccactactactgctgct 174609
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>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete
             sequence
          Length = 164943

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   accactactactgctgctac 323
             ||||||||||||||||||||
Sbjct: 57647 accactactactgctgctac 57628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,414,904
Number of Sequences: 3902068
Number of extensions: 5414904
Number of successful extensions: 104180
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103784
Number of HSP's gapped (non-prelim): 396
length of query: 695
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 672
effective length of database: 17,143,297,704
effective search space: 11520296057088
effective search space used: 11520296057088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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