ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah62o12 |
|---|---|
| Clone Library Name | barley_pub |
>GLYM_SOLTU (P50433) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 518 Score = 92.4 bits (228), Expect = 2e-19 Identities = 45/59 (76%), Positives = 50/59 (84%) Frame = -1 Query: 352 LALKVKPAAAGTKLKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIGFXKXTMKYKN 176 +A+KVK GTKLKDFVATL+S + I+ EIAKLRHDVEEYAKQFPTIGF K TMKYKN Sbjct: 460 IAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518
>GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 91.7 bits (226), Expect = 4e-19 Identities = 44/59 (74%), Positives = 50/59 (84%) Frame = -1 Query: 352 LALKVKPAAAGTKLKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIGFXKXTMKYKN 176 +ALKVK A GTKLKDFV+ ++S S IQ EIAKLRH+VEE+AKQFPTIGF K TMKYKN Sbjct: 459 IALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
>GLYN_FLAPR (P49358) Serine hydroxymethyltransferase 2, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 87.8 bits (216), Expect = 6e-18 Identities = 45/59 (76%), Positives = 49/59 (83%) Frame = -1 Query: 352 LALKVKPAAAGTKLKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIGFXKXTMKYKN 176 LA+K+K A GTKLKDFVA +QS S Q EI+KLRHDVEEYAKQFPTIGF K TMKYKN Sbjct: 460 LAVKIKGEAQGTKLKDFVAAMQS-SAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517
>GLYM_FLAPR (P49357) Serine hydroxymethyltransferase 1, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 86.7 bits (213), Expect = 1e-17 Identities = 44/59 (74%), Positives = 49/59 (83%) Frame = -1 Query: 352 LALKVKPAAAGTKLKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIGFXKXTMKYKN 176 LA+K+K A GTKLKDFV ++S S IQ EI+KLRHDVEEYAKQFPTIGF K TMKYKN Sbjct: 460 LAVKIKGEAKGTKLKDFVTAMES-SAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517
>GLYM_PEA (P34899) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 518 Score = 85.5 bits (210), Expect = 3e-17 Identities = 41/57 (71%), Positives = 47/57 (82%) Frame = -1 Query: 352 LALKVKPAAAGTKLKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIGFXKXTMKY 182 LALKVK + GTKLKDFV LQ+ S +Q EI+KL+HDVEE+AKQFPTIGF K TMKY Sbjct: 460 LALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516
>GLYM_HUMAN (P34897) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 504 Score = 38.1 bits (87), Expect = 0.005 Identities = 21/50 (42%), Positives = 29/50 (58%) Frame = -1 Query: 352 LALKVKPAAAGTKLKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIGF 203 + L+VK A KL+DF + L DS +A LR VE++A+ FP GF Sbjct: 454 IGLEVKSKTA--KLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 501
>GLYM_RABIT (P14519) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 504 Score = 34.3 bits (77), Expect = 0.078 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = -1 Query: 352 LALKVKPAAAGTKLKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIGF 203 + L+VK A KL+DF + L D +A LR V+++A+ FP GF Sbjct: 454 IGLEVKRKTA--KLQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501
>ARD1_RAT (P36407) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) (Fragment) Length = 554 Score = 31.6 bits (70), Expect = 0.50 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = -1 Query: 322 GTKLKDFVATLQSDSNIQXEIA-KLRHDVEEYAKQFPTIGFXKXTMKYKN*ALLCFNSKE 146 G K++ V TL D + I KL+ D E+ + PTIGF T++YKN L F + Sbjct: 380 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 434 Query: 145 ANRKH 131 KH Sbjct: 435 VGEKH 439
>ARD1_MOUSE (Q8BGX0) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) Length = 574 Score = 30.8 bits (68), Expect = 0.86 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = -1 Query: 322 GTKLKDFVATLQSDSNIQXEIA-KLRHDVEEYAKQFPTIGFXKXTMKYKN*ALLCFNSKE 146 G K++ V TL D + I KL+ D E+ + PTIGF T++YKN L F + Sbjct: 400 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 454 Query: 145 ANRKH 131 KH Sbjct: 455 VGGKH 459
>ARD1_HUMAN (P36406) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) (RING finger protein 46) Length = 574 Score = 30.8 bits (68), Expect = 0.86 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = -1 Query: 322 GTKLKDFVATLQSDSNIQXEIA-KLRHDVEEYAKQFPTIGFXKXTMKYKN*ALLCFNSKE 146 G K++ V TL D + I KL+ D E+ + PTIGF T++YKN L F + Sbjct: 400 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 454 Query: 145 ANRKH 131 KH Sbjct: 455 VGGKH 459
>TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-associated| protein 1) (Telomerase protein 1) (p240) (p80 telomerase homolog) Length = 2627 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/68 (32%), Positives = 28/68 (41%) Frame = +3 Query: 138 LFASLLLKHSSA*FLYFMVXXSNPIVGNCFAYSSTSWRSFAISXWMLLSDCKVATKSFSL 317 LF SL + H + LY + NC SWR+ S + LS C +A KS S Sbjct: 127 LFQSLQISHMTQADLYRVNNS------NCLLSEPPSWRAQHFSKGLDLSTCPIALKSISA 180 Query: 318 VPAAAGLT 341 A T Sbjct: 181 TETAQEAT 188
>VGLG_HRSVL (P20895) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 298 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 296 HFAIXQQHPX*NCKASPRCGGICKAIPNNR 207 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSVA (P03423) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 298 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 296 HFAIXQQHPX*NCKASPRCGGICKAIPNNR 207 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSV7 (P27026) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 296 HFAIXQQHPX*NCKASPRCGGICKAIPNNR 207 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSV6 (P27025) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 296 HFAIXQQHPX*NCKASPRCGGICKAIPNNR 207 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSV4 (P27023) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 296 HFAIXQQHPX*NCKASPRCGGICKAIPNNR 207 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSV3 (P27022) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 296 HFAIXQQHPX*NCKASPRCGGICKAIPNNR 207 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSV2 (P27021) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 296 HFAIXQQHPX*NCKASPRCGGICKAIPNNR 207 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>GLYC_CAEEL (P50432) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (Glycine hydroxymethyltransferase) (SHMT) (Glycosylation-related protein 1) Length = 507 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -1 Query: 331 AAAGTKLKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIG 206 A AG LKDF + +++ + ++A L VEE++ +F G Sbjct: 462 AEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503
>GLYC_RABIT (P07511) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)| (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 483 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -1 Query: 313 LKDFVATLQSDSNIQXEIAKLRHDVEEYAKQFPTIG 206 LK+F L D Q + LR +VE +A FP G Sbjct: 444 LKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 479
>SEM4B_MOUSE (Q62179) Semaphorin-4B precursor (Semaphorin C) (Sema C)| Length = 823 Score = 28.5 bits (62), Expect = 4.3 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Frame = +2 Query: 53 CKMLGFLLHKMALHHGSIVYMDLSSVVLPV-CFLAVETQQCLVLVLHGLFXESDCWELLC 229 C +L L ++ +H+G+ V S VLP L V +QQ L G+F CW + Sbjct: 596 CPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLLVGSQQGL-----GVF---QCWSIEE 647 Query: 230 IFLHIVAKLCNFXLDVAVXLQSGNK 304 F +VA C ++ V Q + Sbjct: 648 GFQQLVASYCPEVMEEGVMDQKNQR 672
>SNAP_DROME (Q23983) Soluble NSF attachment protein (SNAP)| (N-ethylmaleimide-sensitive factor attachment protein) Length = 292 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/46 (26%), Positives = 27/46 (58%) Frame = -1 Query: 277 NIQXEIAKLRHDVEEYAKQFPTIGFXKXTMKYKN*ALLCFNSKEAN 140 ++ ++ +H +E+YA+Q+P + + ++K +LC N +E N Sbjct: 211 HLSVDLLNAQHAIEKYAQQYPAF---QDSREFKLIKVLCENLEEQN 253
>PUUP_ECOLI (P76037) Putrescine importer| Length = 461 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +3 Query: 120 CPQLCFLFASLLLKHSSA*FLYFMVXXSNPIVGNCFAYSSTSWRSFAISXWMLLSDCKVA 299 C AS L H+S L +++ N F Y WR+ A++ +++ ++ Sbjct: 295 CTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVHPKWRTPALNV-IMVGIVALS 353 Query: 300 TKSFSLVPAAAGLTFKA 350 F LV A A + F A Sbjct: 354 ALFFDLVTATALINFGA 370
>KC1_PLAF4 (O15726) Casein kinase I (EC 2.7.11.1)| Length = 324 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +3 Query: 42 FPYSVKCLDSFYIRWRFIMDLLFTWTC 122 + Y + L +IR F D LF WTC Sbjct: 266 YTYLRRLLKDLFIREGFTYDFLFDWTC 292
>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked nuclear protein) (Heterochromatin protein 2) (HP1 alpha-interacting protein) (HP1-BP38 protein) Length = 2476 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +1 Query: 220 IALHIPPHRGEALQFXLGCCC-XIAKWQQSP 309 + + + PH+ + +QF CCC + K ++SP Sbjct: 1541 MVIKLKPHQVDGVQFMWDCCCESVEKTKKSP 1571
>PHTF_DROME (Q9V9A8) Putative homeodomain transcription factor| Length = 880 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/73 (24%), Positives = 29/73 (39%) Frame = +2 Query: 41 VPIFCKMLGFLLHKMALHHGSIVYMDLSSVVLPVCFLAVETQQCLVLVLHGLFXESDCWE 220 +PIFC++ L A I Y ++ ++ E + L GL WE Sbjct: 592 IPIFCRLCEVTLGSDAEKASEISYFNMPQLLW-------EKSSASLFTLLGLAFGDSQWE 644 Query: 221 LLCIFLHIVAKLC 259 + + L V +LC Sbjct: 645 RMVLALGFVQRLC 657
>VGLG_HRSV5 (P27024) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 298 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -3 Query: 296 HFAIXQQHPX*NCKASPRCGGICKAIPNNR 207 HF + P C +P C ICK IP+ + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPSKK 193
>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +1 Query: 220 IALHIPPHRGEALQFXLGCCC-XIAKWQQSP 309 + + + PH+ + +QF CCC + K ++SP Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586
>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +1 Query: 220 IALHIPPHRGEALQFXLGCCC-XIAKWQQSP 309 + + + PH+ + +QF CCC + K ++SP Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586
>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf-HX) Length = 2492 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +1 Query: 220 IALHIPPHRGEALQFXLGCCC-XIAKWQQSP 309 + + + PH+ + +QF CCC + K ++SP Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586
>KC1_PLAYO (Q7RBX5) Casein kinase I (EC 2.7.11.1)| Length = 323 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +3 Query: 42 FPYSVKCLDSFYIRWRFIMDLLFTWTC 122 + Y + L +IR F D LF WTC Sbjct: 266 YTYLRRLLKDLFIREGFTYDFLFDWTC 292
>KC1_PLAF7 (Q8IHZ9) Casein kinase I (EC 2.7.11.1)| Length = 323 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +3 Query: 42 FPYSVKCLDSFYIRWRFIMDLLFTWTC 122 + Y + L +IR F D LF WTC Sbjct: 266 YTYLRRLLKDLFIREGFTYDFLFDWTC 292 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,086,106 Number of Sequences: 219361 Number of extensions: 864026 Number of successful extensions: 2205 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2203 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
