Clone Name | rbah62o12 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full insert mRNA sequence Length = 1878 Score = 565 bits (285), Expect = e-158 Identities = 336/353 (95%), Gaps = 1/353 (0%) Strand = Plus / Minus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1774 atcttacagtatgtgcctgcaataagaaactatcgacaaagttcccatattctgtaaaat 1715 Query: 61 gcttggattccttttacataagatggcgcttcatcatggatctattgtttacatggactt 120 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct: 1714 gcttggattccttttacatatggtggcgcttcatcatggatctattgtttacatggactt 1655 Query: 121 gtcctcagttgtgcttcctgtttgcttcctt-gctgttgaaacacagcagtgcttagttc 179 |||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 1654 gtcctcagctgtgcttcttgtttgcttcctttgctgttgaaacacagcagttcttagttc 1595 Query: 180 ttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcatattcctcc 239 |||||||||||||||| || |||||||| |||||||||||||| || |||||||||||| Sbjct: 1594 ttgtacttcatggtctccttctcgaatccaattgttgggaattgtttcgcatattcctcc 1535 Query: 240 acatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgcaaagtggca 299 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 1534 acatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgcaaagtggca 1475 Query: 300 acaaagtccttcagtttggtacctgctgctgcaggtttaaccttcaaagccaa 352 |||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 1474 acaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaggccaa 1422
>ref|XM_469653.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2052 Score = 176 bits (89), Expect = 3e-41 Identities = 157/181 (86%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 |||||||||||||||||||||| | ||| || || || ||||| ||||| || ||||||| Sbjct: 1675 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1616 Query: 232 attcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgca 291 ||||||||||||| |||||||| |||||||| || ||| |||||||| || ||||||| Sbjct: 1615 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1556 Query: 292 aagtggcaacaaagtccttcagtttggtacctgctgctgcaggtttaaccttcaaagcca 351 ||||||||||||||||||||||||| || || ||||||||| |||||||||||||||| Sbjct: 1555 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1496 Query: 352 a 352 | Sbjct: 1495 a 1495 Score = 48.1 bits (24), Expect = 0.019 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||||| Sbjct: 1873 atcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaat 1815 Query: 61 g-cttggattccttttacataagatggc 87 | | || | |||||||||||||||||| Sbjct: 1814 gccaggggtcccttttacataagatggc 1787
>dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A08, full insert sequence Length = 1402 Score = 176 bits (89), Expect = 3e-41 Identities = 157/181 (86%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 |||||||||||||||||||||| | ||| || || || ||||| ||||| || ||||||| Sbjct: 1128 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1069 Query: 232 attcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgca 291 ||||||||||||| |||||||| |||||||| || ||| |||||||| || ||||||| Sbjct: 1068 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1009 Query: 292 aagtggcaacaaagtccttcagtttggtacctgctgctgcaggtttaaccttcaaagcca 351 ||||||||||||||||||||||||| || || ||||||||| |||||||||||||||| Sbjct: 1008 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 949 Query: 352 a 352 | Sbjct: 948 a 948 Score = 48.1 bits (24), Expect = 0.019 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||||| Sbjct: 1326 atcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaat 1268 Query: 61 gcttggattcc-ttttacataagatggc 87 || || ||| |||||||||||||||| Sbjct: 1267 gccaggggtcccttttacataagatggc 1240
>dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H12, full insert sequence Length = 1923 Score = 176 bits (89), Expect = 3e-41 Identities = 157/181 (86%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 |||||||||||||||||||||| | ||| || || || ||||| ||||| || ||||||| Sbjct: 1598 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1539 Query: 232 attcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgca 291 ||||||||||||| |||||||| |||||||| || ||| |||||||| || ||||||| Sbjct: 1538 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1479 Query: 292 aagtggcaacaaagtccttcagtttggtacctgctgctgcaggtttaaccttcaaagcca 351 ||||||||||||||||||||||||| || || ||||||||| |||||||||||||||| Sbjct: 1478 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1419 Query: 352 a 352 | Sbjct: 1418 a 1418 Score = 48.1 bits (24), Expect = 0.019 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||||| Sbjct: 1796 atcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaat 1738 Query: 61 g-cttggattccttttacataagatggc 87 | | || | |||||||||||||||||| Sbjct: 1737 gccaggggtcccttttacataagatggc 1710
>dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P20, full insert sequence Length = 1976 Score = 176 bits (89), Expect = 3e-41 Identities = 157/181 (86%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 |||||||||||||||||||||| | ||| || || || ||||| ||||| || ||||||| Sbjct: 1599 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1540 Query: 232 attcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgca 291 ||||||||||||| |||||||| |||||||| || ||| |||||||| || ||||||| Sbjct: 1539 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1480 Query: 292 aagtggcaacaaagtccttcagtttggtacctgctgctgcaggtttaaccttcaaagcca 351 ||||||||||||||||||||||||| || || ||||||||| |||||||||||||||| Sbjct: 1479 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1420 Query: 352 a 352 | Sbjct: 1419 a 1419 Score = 48.1 bits (24), Expect = 0.019 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||||| Sbjct: 1797 atcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaat 1739 Query: 61 g-cttggattccttttacataagatggc 87 | | || | |||||||||||||||||| Sbjct: 1738 gccaggggtcccttttacataagatggc 1711
>dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A01, full insert sequence Length = 1844 Score = 176 bits (89), Expect = 3e-41 Identities = 157/181 (86%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 |||||||||||||||||||||| | ||| || || || ||||| ||||| || ||||||| Sbjct: 1591 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1532 Query: 232 attcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgca 291 ||||||||||||| |||||||| |||||||| || ||| |||||||| || ||||||| Sbjct: 1531 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1472 Query: 292 aagtggcaacaaagtccttcagtttggtacctgctgctgcaggtttaaccttcaaagcca 351 ||||||||||||||||||||||||| || || ||||||||| |||||||||||||||| Sbjct: 1471 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1412 Query: 352 a 352 | Sbjct: 1411 a 1411 Score = 48.1 bits (24), Expect = 0.019 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||||| Sbjct: 1789 atcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaat 1731 Query: 61 g-cttggattccttttacataagatggc 87 | | || | |||||||||||||||||| Sbjct: 1730 gccaggggtcccttttacataagatggc 1703
>gb|AY105738.1| Zea mays PCO070960 mRNA sequence Length = 1476 Score = 157 bits (79), Expect = 3e-35 Identities = 125/141 (88%), Gaps = 3/141 (2%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcata 232 |||||||||||| |||||||||| ||| || ||||| |||||||||||||| |||||| | Sbjct: 1231 ttagttcttgtatttcatggtctctttctcaaatccaattgttgggaattgttttgcaaa 1172 Query: 233 ttcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgcaa 292 |||||| ||||| ||||||||||||||||| ||| |||||| |||| || |||||||| Sbjct: 1171 ttcctctacatcatggcgaagctttgcaatctcaacttgga---tgctatcagattgcaa 1115 Query: 293 agtggcaacaaagtccttcag 313 ||||||||||||||||||||| Sbjct: 1114 agtggcaacaaagtccttcag 1094
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 153 bits (77), Expect = 5e-34 Identities = 127/145 (87%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 |||||||||||||||||||||| | ||| || || || ||||| ||||| || ||||||| Sbjct: 30011320 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30011261 Query: 232 attcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgca 291 ||||||||||||| |||||||| |||||||| || ||| |||||||| || ||||||| Sbjct: 30011260 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30011201 Query: 292 aagtggcaacaaagtccttcagttt 316 ||||||||||||||||||||||||| Sbjct: 30011200 aagtggcaacaaagtccttcagttt 30011176 Score = 48.1 bits (24), Expect = 0.019 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||||| Sbjct: 30011754 atcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaat 30011696 Query: 61 gcttggattcc-ttttacataagatggc 87 || || ||| |||||||||||||||| Sbjct: 30011695 gccaggggtcccttttacataagatggc 30011668 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 325 ctgctgcaggtttaaccttcaaagccaa 352 ||||||||| ||||||||||||||||| Sbjct: 30011026 ctgctgcagccttaaccttcaaagccaa 30010999
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 153 bits (77), Expect = 5e-34 Identities = 127/145 (87%) Strand = Plus / Plus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 |||||||||||||||||||||| | ||| || || || ||||| ||||| || ||||||| Sbjct: 96431 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 96490 Query: 232 attcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgca 291 ||||||||||||| |||||||| |||||||| || ||| |||||||| || ||||||| Sbjct: 96491 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 96550 Query: 292 aagtggcaacaaagtccttcagttt 316 ||||||||||||||||||||||||| Sbjct: 96551 aagtggcaacaaagtccttcagttt 96575 Score = 48.1 bits (24), Expect = 0.019 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand = Plus / Plus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||||| Sbjct: 95997 atcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaat 96055 Query: 61 g-cttggattccttttacataagatggc 87 | | || | |||||||||||||||||| Sbjct: 96056 gccaggggtcccttttacataagatggc 96083 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 ctgctgcaggtttaaccttcaaagccaa 352 ||||||||| ||||||||||||||||| Sbjct: 96725 ctgctgcagccttaaccttcaaagccaa 96752
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 153 bits (77), Expect = 5e-34 Identities = 127/145 (87%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 |||||||||||||||||||||| | ||| || || || ||||| ||||| || ||||||| Sbjct: 30102742 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30102683 Query: 232 attcctccacatcgtggcgaagctttgcaatttcancttggatgttgctgtcngattgca 291 ||||||||||||| |||||||| |||||||| || ||| |||||||| || ||||||| Sbjct: 30102682 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30102623 Query: 292 aagtggcaacaaagtccttcagttt 316 ||||||||||||||||||||||||| Sbjct: 30102622 aagtggcaacaaagtccttcagttt 30102598 Score = 48.1 bits (24), Expect = 0.019 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 1 atcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaat 60 ||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||||| Sbjct: 30103176 atcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaat 30103118 Query: 61 g-cttggattccttttacataagatggc 87 | | || | |||||||||||||||||| Sbjct: 30103117 gccaggggtcccttttacataagatggc 30103090 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 325 ctgctgcaggtttaaccttcaaagccaa 352 ||||||||| ||||||||||||||||| Sbjct: 30102448 ctgctgcagccttaaccttcaaagccaa 30102421
>emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxymethyltransferase Length = 1779 Score = 81.8 bits (41), Expect = 1e-12 Identities = 78/91 (85%) Strand = Plus / Minus Query: 175 agttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcatatt 234 |||| ||||| |||||||| | ||| || || ||||||||||||||||| || ||||| | Sbjct: 1576 agtttttgtatttcatggtttctttctcaaacccgattgttgggaattgtttggcatact 1517 Query: 235 cctccacatcgtggcgaagctttgcaatttc 265 ||||||| |||||||| ||||||| |||||| Sbjct: 1516 cctccacgtcgtggcgtagctttgaaatttc 1486
>emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxymethyltransferase Length = 1746 Score = 73.8 bits (37), Expect = 3e-10 Identities = 74/87 (85%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 ||||||| ||||| |||||||| | ||| || ||||||||||| |||||||| || || | Sbjct: 1588 cttagtttttgtatttcatggtttctttctcaaatccgattgtcgggaattgtttcgcgt 1529 Query: 232 attcctccacatcgtggcgaagctttg 258 |||||||||| || ||||| ||||||| Sbjct: 1528 attcctccacgtcatggcgtagctttg 1502
>emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltransferase Length = 1745 Score = 73.8 bits (37), Expect = 3e-10 Identities = 80/95 (84%) Strand = Plus / Minus Query: 172 cttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctttgcat 231 ||||||| |||||||||||||| | ||| || || || ||||| ||||| ||||| |||| Sbjct: 1563 cttagtttttgtacttcatggtttctttctcaaacccaattgtagggaactgcttagcat 1504 Query: 232 attcctccacatcgtggcgaagctttgcaatttca 266 | ||||||||||| || || || |||||||||||| Sbjct: 1503 actcctccacatcatgacggagttttgcaatttca 1469
>ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase AT4G37930 (SHM1) mRNA, complete cds Length = 1822 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1677 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1624
>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88 Length = 198493 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Plus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 134324 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 134377
>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project) Length = 147215 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Plus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 19909 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 19962
>emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hydroxymethyl transferase (shm1 gene) Length = 1797 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1653 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1600
>gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1775 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1608
>gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1716 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1607 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1554
>gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1730 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1608 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1555
>gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1770 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1608
>gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, complete cds Length = 1554 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1554 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1501
>emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZH08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1771 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1650 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1597
>gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete sequence Length = 1725 Score = 56.0 bits (28), Expect = 8e-05 Identities = 47/54 (87%) Strand = Plus / Minus Query: 173 ttagttcttgtacttcatggtctntttntcgaatccgattgttgggaattgctt 226 ||||||||||||||||||||| | ||| || || || ||||||||||| ||||| Sbjct: 1616 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaactgctt 1563
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557 Length = 87695 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 228 gcatattcctccacatcgtggcgaagctttgcaat 262 ||||| ||||| ||||||||||||||||||||||| Sbjct: 7531 gcatactcctcaacatcgtggcgaagctttgcaat 7497
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541, complete sequence Length = 110985 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 228 gcatattcctccacatcgtggcgaagctttgcaat 262 ||||| ||||| ||||||||||||||||||||||| Sbjct: 95134 gcatactcctcaacatcgtggcgaagctttgcaat 95100
>ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.2 mRNA, complete cds Length = 1966 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.3 mRNA, complete cds Length = 2072 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.1 mRNA, complete cds Length = 1962 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 1644 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1596
>gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1633 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1933 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 1643 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1595
>dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymethyltransferase -like protein, complete cds, clone: RAFL22-26-M08 Length = 909 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 552 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 504
>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence Length = 110946 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 23145 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 23097
>emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1960 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 1639 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1591
>gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1633 Score = 46.1 bits (23), Expect = 0.076 Identities = 42/49 (85%) Strand = Plus / Minus Query: 187 tcatggtctntttntcgaatccgattgttgggaattgctttgcatattc 235 |||| |||| ||| ||||| || || |||||||||||||| |||||||| Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209149 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 129 ttgtgcttcctgtttgcttcct 150 |||||||||||||||||||||| Sbjct: 194735 ttgtgcttcctgtttgcttcct 194756
>gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187830 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 129 ttgtgcttcctgtttgcttcct 150 |||||||||||||||||||||| Sbjct: 54206 ttgtgcttcctgtttgcttcct 54227
>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence Length = 202155 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 tgcttcctgtttgcttccttgctgt 156 |||||||||||||||||| |||||| Sbjct: 70853 tgcttcctgtttgcttccgtgctgt 70877
>emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H13 on chromosome 1p34.1-35.3 Contains the gene for a novel protein, a ribosomal protein L21 (RPL21), a ribosomal protein L10a (RPL10A) and the gene for a novel zinc finger protein, complete sequence Length = 139737 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 tgtgcttcctgtttgcttcct 150 ||||||||||||||||||||| Sbjct: 105621 tgtgcttcctgtttgcttcct 105601
>gb|AY642233.1| Plasmodium knowlesi Pk1(B+)1+ clone 41 SICAvar mRNA, partial sequence Length = 1142 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 210 attgttgggaattgctttgcatattcct 237 |||||| | ||||||||||||||||||| Sbjct: 134 attgtttgcaattgctttgcatattcct 107
>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence Length = 256158 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ctgtttgcttccttgctgtt 157 |||||||||||||||||||| Sbjct: 85155 ctgtttgcttccttgctgtt 85174
>ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04710) partial mRNA Length = 1263 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gcttccttgctgttgaaacacagc 167 |||||||||| ||||||||||||| Sbjct: 35 gcttccttgcagttgaaacacagc 12
>ref|XM_390406.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10230.1) partial mRNA Length = 1707 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ctttgcatattcctccacat 243 |||||||||||||||||||| Sbjct: 1329 ctttgcatattcctccacat 1310
>emb|AL358815.12| Human DNA sequence from clone RP11-526J3 on chromosome 9, complete sequence Length = 192867 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctgcaggtttaaccttcaaa 347 |||||||||||||||||||| Sbjct: 119835 ctgcaggtttaaccttcaaa 119816
>gb|AC013242.8| Homo sapiens chromosome 10 clone RP11-315E23, complete sequence Length = 170174 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ttgggaattgctttgcatat 233 |||||||||||||||||||| Sbjct: 99668 ttgggaattgctttgcatat 99687
>gb|AC104090.3| Homo sapiens BAC clone RP11-780M14 from 4, complete sequence Length = 101033 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 cctgctgctgcaggtttaac 340 |||||||||||||||||||| Sbjct: 85637 cctgctgctgcaggtttaac 85618
>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12 Length = 87434 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tgcctgcaataagaaactat 33 |||||||||||||||||||| Sbjct: 54636 tgcctgcaataagaaactat 54617
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 tggtacctgctgctgcaggt 335 |||||||||||||||||||| Sbjct: 1175721 tggtacctgctgctgcaggt 1175702
>gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_17, complete sequence Length = 211316 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aagaaactattgacaaagtt 43 |||||||||||||||||||| Sbjct: 122669 aagaaactattgacaaagtt 122650
>dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete sequence Length = 171738 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aagaaactattgacaaagtt 43 |||||||||||||||||||| Sbjct: 164989 aagaaactattgacaaagtt 165008
>dbj|AB002815.1| Perilla frutescens mRNA for chalcone synthase, complete cds Length = 1449 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cagtttggtacctgctgctg 330 |||||||||||||||||||| Sbjct: 1203 cagtttggtacctgctgctg 1222 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,442,347 Number of Sequences: 3902068 Number of extensions: 3442347 Number of successful extensions: 91300 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91160 Number of HSP's gapped (non-prelim): 130 length of query: 355 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 333 effective length of database: 17,147,199,772 effective search space: 5710017524076 effective search space used: 5710017524076 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)