>ZN553_HUMAN (Q96MX3) Zinc finger protein 553|
          Length = 618

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 546 KKLLQMRGHKRKPWPPSELLMHKNP--PVSSKPKGRIRLQ 433
           K L   RG + +P PPS LL   NP  PV   P+ R+R Q
Sbjct: 496 KHLRTHRGERARPPPPSTLLRPHNPPGPVPMAPRPRVRAQ 535

>RNFC_HAEIN (P71397) Electron transport complex protein rnfC|
          Length = 819

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
 Frame = -3

Query: 502 SQRAADAQEPTSKLKTEGKDTTS---EEAVTSTVNEAQASLENLLTRAKGLKL--STDFS 338
           SQRAA A+      +T+G+D      E       NE +++    LT  KG  L  +TD  
Sbjct: 479 SQRAAQARRE-ELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLM 537

Query: 337 WDKFSTQLXXXXXXARGSDEEEP-------RAQIATVRGQAKAKKLA 218
             + + +L      ++  ++E+        +A +A    +AKAKKLA
Sbjct: 538 AQRKARRLARQQAASQVENQEQQTQPTNAKKAAVAAALARAKAKKLA 584

>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -2

Query: 524  GTRGSPGLPASC*CTRTHQ*AQNRREGYDFRRGSHKYGERG----AGLTGEPSDQ 372
            G RG PGLPA+    R  + +Q  R GY   +G  + GERG    AG+ G   D+
Sbjct: 1210 GIRGQPGLPATVPDIRGDKGSQGER-GYTGEKG--EQGERGLTGPAGVAGAKGDR 1261

>VP03_SHV21 (Q01000) Probable membrane antigen 3 (Tegument protein)|
          Length = 1246

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 287 APCSRSCGCELCAELVPGEISAKLKPFGSGQKV 385
           A C + CG  L    +P ++ AKL PF    +V
Sbjct: 434 AVCQQVCGARLLVSALPPQVVAKLAPFSPSNRV 466

>RGS10_HUMAN (O43665) Regulator of G-protein signaling 10 (RGS10)|
          Length = 173

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = -3

Query: 457 TEGKDTTSEEAVTSTVNEAQASLENLLTRAKGLKLSTDFSWDKFSTQ 317
           ++G  ++S +++ ST   A ASLENLL   +G+K   +F   +FS +
Sbjct: 13  SDGSSSSSHQSLKSTAKWA-ASLENLLEDPEGVKRFREFLKKEFSEE 58

>SAS10_MOUSE (Q9JI13) Something about silencing protein 10 (Disrupter of|
           silencing SAS10) (Charged amino acid-rich leucine zipper
           1) (Crl-1)
          Length = 469

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 570 RTLEEKSTKKLLQMRGHKRKPWPPSELLMHKNPPVSSKPKGRIRLQKRQSQVR*TRR 400
           + LEE++ K+ +  +  K +   P    + +NP V  + K R    +R+ QVR  RR
Sbjct: 390 QALEEQNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRKAKIRRRGQVREVRR 446

>SAS10_RAT (Q6AXX4) Something about silencing protein 10 (Disrupter of|
           silencing SAS10) (Charged amino acid-rich leucine zipper
           1)
          Length = 470

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 570 RTLEEKSTKKLLQMRGHKRKPWPPSELLMHKNPPVSSKPKGRIRLQKRQSQVR*TRR 400
           + LEE++ K+ +  +  K +   P    + +NP V  + K R    +R+ QVR  RR
Sbjct: 391 QALEEQNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRR 447


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,362,370
Number of Sequences: 219361
Number of extensions: 1269754
Number of successful extensions: 3946
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3941
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)