Clone Information

BLAST Search Result

Clone Name	rbah62o08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ000242.1\|HVJ000242 Hordeum vulgare mRNA for expressed sequ...	957	0.0
2	ref\|XM_476651.1\| Oryza sativa (japonica cultivar-group), mRNA	398	e-108
3	dbj\|AK069726.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	398	e-108
4	gb\|AY106174.1\| Zea mays PCO144723 mRNA sequence	394	e-106
5	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
6	dbj\|AP003703.4\| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
7	ref\|XM_705187.1\| Candida albicans SC5314 Bem1-like protein (CaO1...	44	0.52
8	ref\|XM_705171.1\| Candida albicans SC5314 Bem1-like protein (CaO1...	44	0.52
9	dbj\|AK112043.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.52
10	ref\|XM_602751.2\| PREDICTED: Bos taurus similar to chromosome 20 ...	42	2.1
11	ref\|XM_866049.1\| PREDICTED: Bos taurus similar to chromosome 20 ...	42	2.1
12	gb\|AC142114.3\| Mus musculus BAC clone RP23-421C24 from chromosom...	42	2.1
13	gb\|AC096658.1\| Homo sapiens BAC clone RP11-29C24 from 7, complet...	42	2.1
14	gb\|AC142307.1\| Pan troglodytes BAC clone RP43-131H12 from 7, com...	42	2.1
15	dbj\|AB113399.1\| Rattus norvegicus rCNR gene for cadherin-related...	42	2.1
16	emb\|AL840626.7\| Mouse DNA sequence from clone RP23-151M8 on chro...	42	2.1
17	gb\|AC152076.4\| Mus musculus BAC clone RP23-326O10 from chromosom...	40	8.2
18	ref\|XM_581880.2\| PREDICTED: Bos taurus similar to cartilage inte...	40	8.2
19	gb\|AC138454.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.2
20	gb\|AC113495.15\| Mus musculus chromosome 9, clone RP23-361O11, co...	40	8.2
21	gb\|AC118540.15\| Mus musculus strain 129/SvJ clone mgs1-169d12 ma...	40	8.2
22	gb\|AC127283.2\| Mus musculus BAC clone RP23-323E20 from chromosom...	40	8.2
23	gb\|AC144503.17\| Medicago truncatula clone mth2-13f22, complete s...	40	8.2
24	gb\|AC090329.6\| Homo sapiens chromosome 18, clone RP11-793M6, com...	40	8.2
25	gb\|AC090163.10\| Homo sapiens chromosome 11, clone RP11-706A13, c...	40	8.2
26	emb\|AL645643.7\| Mouse DNA sequence from clone RP23-253F13 on chr...	40	8.2
27	gb\|AC110012.5\| Homo sapiens chromosome 8, clone CTD-2024L13, com...	40	8.2
28	gb\|AC103854.2\| Homo sapiens chromosome 11, clone RP11-104M24, co...	40	8.2
29	gb\|AC091044.9\| Homo sapiens chromosome 18, clone RP11-694H12, co...	40	8.2
30	gb\|AC093328.3\| Homo sapiens chromosome 8, clone RP11-30J20, comp...	40	8.2
31	gb\|AC161113.2\| Mus musculus BAC clone RP24-362N9 from chromosome...	40	8.2
32	gb\|AC008822.7\| Homo sapiens chromosome 5 clone CTD-2129H18, comp...	40	8.2
33	gb\|AC024587.5\| Homo sapiens chromosome 5 clone RP11-252I13, comp...	40	8.2
34	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
35	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
36	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
37	gb\|AC007684.3\| Homo sapiens BAC clone RP11-449G16 from 2, comple...	40	8.2
38	gb\|AC008073.4\| Homo sapiens BAC clone RP11-507M3 from 2, complet...	40	8.2
39	gb\|AF445393.1\|F445385S08 Homo sapiens MAP4K3 (MAP4K3) gene, exon...	40	8.2
40	dbj\|AP004891.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
41	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.2
42	emb\|AL772137.8\| Mouse DNA sequence from clone RP23-229A22 on chr...	40	8.2
43	emb\|CT025670.8\| Mouse DNA sequence from clone RP24-384G18 on chr...	40	8.2

>emb|AJ000242.1|HVJ000242 Hordeum vulgare mRNA for expressed sequence tag
          Length = 774

 Score =  957 bits (483), Expect = 0.0
 Identities = 493/495 (99%), Gaps = 1/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 105 ggagacctccggtgccgggtctcgtcgccttcagctatgctaccctctggcttccacatg 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ggagacctccggtgccgggtctcgtcgccttcagctatgctaccctctggcttccacatg 715

                                                                       
Query: 165 acgtccttcaggccattcgagatactatggtaaaacttgtggaattcgagggtgtcgcca 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 acgtccttcaggccattcgagatactatggtaaaacttgtggaattcgagggtgtcgcca 655

                                                                       
Query: 225 ttcgacttgcggagctccaccatgtatagtgagggtgtcacttcaaaaacctctgttgca 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttcgacttgcggagctccaccatgtatagtgagggtgtcacttcaaaaacctctgttgca 595

                                                                       
Query: 285 atcgccagctgacctttccttccaggattctctccttgcaacttcagcttgtagttgcgc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atcgccagctgacctttccttccaggattctctccttgcaacttcagcttgtagttgcgc 535

                                                                       
Query: 345 ttctgtacattgaagcccatgggtcctgctgctgcttcaattttcgacaatatttcattt 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttctgtacattgaagcccatgggtcctgctgctgcttcaattttcgacaatatttcattt 475

                                                                       
Query: 405 gctggaagcctcgatgcaaaccgtgtttcacgtttaacagaatcagtttgcttctcaaaa 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gctggaagcctcgatgcaaaccgtgtttcacgtttaacagaatcagtttgcttctcaaaa 415

                                                                       
Query: 465 agggtgccaagattgaggccctgagaggtagagatcaactcgaatgcattcatcactgcc 524
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agggtgccaagattgagcccctgagaggtagagatcaactcgaatgcattcatcactgcc 355

                                                                       
Query: 525 ggtctttcttcacgtctctcaacaacaagctgtgctgggtccccgggattcgttgaaaat 584
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 354 ggtctttcttcacgtctctcaacaacaagctgtgctgggtcccc-ggattcgttgaaaat 296

                          
Query: 585 agagttgatgtcatc 599
           |||||||||||||||
Sbjct: 295 agagttgatgtcatc 281

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>ref|XM_476651.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1893

 Score =  398 bits (201), Expect = e-108
 Identities = 399/463 (86%), Gaps = 4/463 (0%)
 Strand = Plus / Minus

                                                                        
Query: 140  tatgctaccctctggcttccacatgacgtccttcaggccattcgagatactatggtaaaa 199
            |||||||| ||| ||||||||||| || || ||||||||||| |||||  | ||||| ||
Sbjct: 1595 tatgctactctccggcttccacatcacatctttcaggccattggagatgttgtggtagaa 1536

                                                                        
Query: 200  cttgtggaattcgagggtgtcgccattcgacttgcggagctccaccatgtatagtgaggg 259
            ||| |||||||| || |||||||| || || ||||||||||| |||||||| || |||||
Sbjct: 1535 cttatggaattcaagagtgtcgccgttagatttgcggagctcaaccatgtacagcgaggg 1476

                                                                        
Query: 260  tgtcacttcaaaaacctctgttgcaatcgccagctgacctttccttccaggattctctcc 319
             || ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 1475 cgtgacttcaaaaacctctgttgcaattgcaagctgacctttccttcctggattctctcc 1416

                                                                        
Query: 320  ttgcaacttcagcttgtagttgcgcttctgtacattgaagcccatgggtcctgctgctgc 379
            |||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct: 1415 ttgcaacttcagcttgtagttgcgcttctgtacattaaagcccatgggtccagcagctgc 1356

                                                                        
Query: 380  ttcaattttcgacaatatttcatttgctggaagcctcgatgcaaaccgtgtttcacgttt 439
            |||||||||||||||||| || ||||| || ||||| |||||||| | |||||| || ||
Sbjct: 1355 ttcaattttcgacaatatctcgtttgcaggcagccttgatgcaaatcttgtttctcgctt 1296

                                                                        
Query: 440  aacagaa---tcagtttgcttctcaaaaagggtgccaagattgaggccctgagaggtaga 496
             ||||||   |  | |||||| ||||| || |||||||||||||| |||||||| |||||
Sbjct: 1295 cacagaaccctgcgattgcttttcaaagagtgtgccaagattgagaccctgagatgtaga 1236

                                                                        
Query: 497  gatcaactcgaatgcattcatcactgccggtctttcttcacgtctctcaacaacaagctg 556
            ||||||||| || |||||||||||||  || || ||||| || ||||| |||||||||||
Sbjct: 1235 gatcaactcaaaagcattcatcactgatggcctctcttctcgcctctcgacaacaagctg 1176

                                                       
Query: 557  tgctgggtccccgggattcgttgaaaatagagttgatgtcatc 599
            || | |||||||  ||||| || |||||||||||||| |||||
Sbjct: 1175 tgtttggtcccc-agattcattaaaaatagagttgatatcatc 1134

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>dbj|AK069726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M13, full
            insert sequence
          Length = 1894

 Score =  398 bits (201), Expect = e-108
 Identities = 399/463 (86%), Gaps = 4/463 (0%)
 Strand = Plus / Minus

                                                                        
Query: 140  tatgctaccctctggcttccacatgacgtccttcaggccattcgagatactatggtaaaa 199
            |||||||| ||| ||||||||||| || || ||||||||||| |||||  | ||||| ||
Sbjct: 1594 tatgctactctccggcttccacatcacatctttcaggccattggagatgttgtggtagaa 1535

                                                                        
Query: 200  cttgtggaattcgagggtgtcgccattcgacttgcggagctccaccatgtatagtgaggg 259
            ||| |||||||| || |||||||| || || ||||||||||| |||||||| || |||||
Sbjct: 1534 cttatggaattcaagagtgtcgccgttagatttgcggagctcaaccatgtacagcgaggg 1475

                                                                        
Query: 260  tgtcacttcaaaaacctctgttgcaatcgccagctgacctttccttccaggattctctcc 319
             || ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 1474 cgtgacttcaaaaacctctgttgcaattgcaagctgacctttccttcctggattctctcc 1415

                                                                        
Query: 320  ttgcaacttcagcttgtagttgcgcttctgtacattgaagcccatgggtcctgctgctgc 379
            |||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct: 1414 ttgcaacttcagcttgtagttgcgcttctgtacattaaagcccatgggtccagcagctgc 1355

                                                                        
Query: 380  ttcaattttcgacaatatttcatttgctggaagcctcgatgcaaaccgtgtttcacgttt 439
            |||||||||||||||||| || ||||| || ||||| |||||||| | |||||| || ||
Sbjct: 1354 ttcaattttcgacaatatctcgtttgcaggcagccttgatgcaaatcttgtttctcgctt 1295

                                                                        
Query: 440  aacagaa---tcagtttgcttctcaaaaagggtgccaagattgaggccctgagaggtaga 496
             ||||||   |  | |||||| ||||| || |||||||||||||| |||||||| |||||
Sbjct: 1294 cacagaaccctgcgattgcttttcaaagagtgtgccaagattgagaccctgagatgtaga 1235

                                                                        
Query: 497  gatcaactcgaatgcattcatcactgccggtctttcttcacgtctctcaacaacaagctg 556
            ||||||||| || |||||||||||||  || || ||||| || ||||| |||||||||||
Sbjct: 1234 gatcaactcaaaagcattcatcactgatggcctctcttctcgcctctcgacaacaagctg 1175

                                                       
Query: 557  tgctgggtccccgggattcgttgaaaatagagttgatgtcatc 599
            || | |||||||  ||||| || |||||||||||||| |||||
Sbjct: 1174 tgtttggtcccc-agattcattaaaaatagagttgatatcatc 1133

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>gb|AY106174.1| Zea mays PCO144723 mRNA sequence
          Length = 1844

 Score =  394 bits (199), Expect = e-106
 Identities = 397/463 (85%)
 Strand = Plus / Minus

                                                                        
Query: 108  gacctccggtgccgggtctcgtcgccttcagctatgctaccctctggcttccacatgacg 167
            |||||||  ||||| | ||||||||||||  | ||||  | ||| ||||||||||| |||
Sbjct: 1692 gacctcctttgccgcgcctcgtcgccttccacgatgccgctctccggcttccacatcacg 1633

                                                                        
Query: 168  tccttcaggccattcgagatactatggtaaaacttgtggaattcgagggtgtcgccattc 227
            |||||||| ||||| |||||  | ||||| |||||||||||||| ||||||||||| || 
Sbjct: 1632 tccttcagtccatttgagatgttgtggtagaacttgtggaattcaagggtgtcgccgttg 1573

                                                                        
Query: 228  gacttgcggagctccaccatgtatagtgagggtgtcacttcaaaaacctctgttgcaatc 287
            |||||||| ||||| |||||||| || || || || || || |||||||||||||| || 
Sbjct: 1572 gacttgcgcagctcaaccatgtacagggaaggcgtgacctcgaaaacctctgttgcgatg 1513

                                                                        
Query: 288  gccagctgacctttccttccaggattctctccttgcaacttcagcttgtagttgcgcttc 347
            ||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||
Sbjct: 1512 gccagctgacctttccttccagggttctccccttgcagcttcagcttatagttgcgcttc 1453

                                                                        
Query: 348  tgtacattgaagcccatgggtcctgctgctgcttcaattttcgacaatatttcatttgct 407
            || || ||||||||||||||||| ||||||||||| || ||||||| ||| |||||||| 
Sbjct: 1452 tgaacgttgaagcccatgggtcccgctgctgcttcgatcttcgacagtatctcatttgca 1393

                                                                        
Query: 408  ggaagcctcgatgcaaaccgtgtttcacgtttaacagaatcagtttgcttctcaaaaagg 467
            |||||||| || ||||||| |||||| || ||||||||| | ||||||||||| || || 
Sbjct: 1392 ggaagccttgacgcaaaccttgtttctcgcttaacagaacccgtttgcttctcgaagagc 1333

                                                                        
Query: 468  gtgccaagattgaggccctgagaggtagagatcaactcgaatgcattcatcactgccggt 527
            || || ||||||||||||||||| |||||||| |||||||| || ||||||||||  |||
Sbjct: 1332 gtcccgagattgaggccctgagacgtagagattaactcgaaagcgttcatcactgatggt 1273

                                                       
Query: 528  ctttcttcacgtctctcaacaacaagctgtgctgggtccccgg 570
            |||||||| |  ||||||||||||||||||||||| |||||||
Sbjct: 1272 ctttcttctctcctctcaacaacaagctgtgctggctccccgg 1230

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                           
Query: 332     cttgtagttgcgcttctgtacattgaagcccatgggtcctgctgctgcttcaattttcga 391
               |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 2676485 cttgtagttgcgcttctgtacattaaagcccatgggtccagcagctgcttcaattttcga 2676544

                                                                      
Query: 392     caatatttcatttgctggaagcctcgatgcaaaccgtgtttcacgtttaacagaa 446
               |||||| || ||||| || ||||| |||||||| | |||||| || || ||||||
Sbjct: 2676545 caatatctcgtttgcaggcagccttgatgcaaatcttgtttctcgcttcacagaa 2676599



 Score =  101 bits (51), Expect = 3e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                           
Query: 452     ttgcttctcaaaaagggtgccaagattgaggccctgagaggtagagatcaactcgaatgc 511
               |||||| ||||| || |||||||||||||| |||||||| |||||||||||||| || ||
Sbjct: 2676723 ttgcttttcaaagagtgtgccaagattgagaccctgagatgtagagatcaactcaaaagc 2676782

                                                              
Query: 512     attcatcactgccggtctttcttcacgtctctcaacaacaagctgtg 558
               |||||||||||  || || ||||| || ||||| |||||||||||||
Sbjct: 2676783 attcatcactgatggcctctcttctcgcctctcgacaacaagctgtg 2676829



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Plus

                                                                           
Query: 273     acctctgttgcaatcgccagctgacctttccttccaggattctctccttgcaacttcagc 332
               |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2676337 acctctgttgcaattgcaagctgacctttccttcctggattctctccttgcaacttcagc 2676396

                
Query: 333     t 333
               |
Sbjct: 2676397 t 2676397



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                           
Query: 204     tggaattcgagggtgtcgccattcgacttgcggagctccaccatgtatagtgagggtgtc 263
               |||||||| || |||||||| || || ||||||||||| |||||||| || ||||| || 
Sbjct: 2676150 tggaattcaagagtgtcgccgttagatttgcggagctcaaccatgtacagcgagggcgtg 2676209

                            
Query: 264     acttcaaaaacct 276
               |||||||||||||
Sbjct: 2676210 acttcaaaaacct 2676222



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 140     tatgctaccctctggcttccacatgacgtccttcaggccattcgagat 187
               |||||||| ||| ||||||||||| || || ||||||||||| |||||
Sbjct: 2675990 tatgctactctccggcttccacatcacatctttcaggccattggagat 2676037

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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1027_G06
          Length = 121885

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                          
Query: 332    cttgtagttgcgcttctgtacattgaagcccatgggtcctgctgctgcttcaattttcga 391
              |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 102203 cttgtagttgcgcttctgtacattaaagcccatgggtccagcagctgcttcaattttcga 102262

                                                                     
Query: 392    caatatttcatttgctggaagcctcgatgcaaaccgtgtttcacgtttaacagaa 446
              |||||| || ||||| || ||||| |||||||| | |||||| || || ||||||
Sbjct: 102263 caatatctcgtttgcaggcagccttgatgcaaatcttgtttctcgcttcacagaa 102317



 Score =  101 bits (51), Expect = 3e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                          
Query: 452    ttgcttctcaaaaagggtgccaagattgaggccctgagaggtagagatcaactcgaatgc 511
              |||||| ||||| || |||||||||||||| |||||||| |||||||||||||| || ||
Sbjct: 102441 ttgcttttcaaagagtgtgccaagattgagaccctgagatgtagagatcaactcaaaagc 102500

                                                             
Query: 512    attcatcactgccggtctttcttcacgtctctcaacaacaagctgtg 558
              |||||||||||  || || ||||| || ||||| |||||||||||||
Sbjct: 102501 attcatcactgatggcctctcttctcgcctctcgacaacaagctgtg 102547



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Plus

                                                                          
Query: 273    acctctgttgcaatcgccagctgacctttccttccaggattctctccttgcaacttcagc 332
              |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 102055 acctctgttgcaattgcaagctgacctttccttcctggattctctccttgcaacttcagc 102114

               
Query: 333    t 333
              |
Sbjct: 102115 t 102115



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                          
Query: 204    tggaattcgagggtgtcgccattcgacttgcggagctccaccatgtatagtgagggtgtc 263
              |||||||| || |||||||| || || ||||||||||| |||||||| || ||||| || 
Sbjct: 101868 tggaattcaagagtgtcgccgttagatttgcggagctcaaccatgtacagcgagggcgtg 101927

                           
Query: 264    acttcaaaaacct 276
              |||||||||||||
Sbjct: 101928 acttcaaaaacct 101940



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 140    tatgctaccctctggcttccacatgacgtccttcaggccattcgagat 187
              |||||||| ||| ||||||||||| || || ||||||||||| |||||
Sbjct: 101708 tatgctactctccggcttccacatcacatctttcaggccattggagat 101755

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>ref|XM_705187.1| Candida albicans SC5314 Bem1-like protein (CaO19.177), mRNA
          Length = 1453

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 377 tgcttcaattttcgacaatatttcat 402
           |||||||||||| |||||||||||||
Sbjct: 663 tgcttcaattttagacaatatttcat 638

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>ref|XM_705171.1| Candida albicans SC5314 Bem1-like protein (CaO19.7810), mRNA
          Length = 1453

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 377 tgcttcaattttcgacaatatttcat 402
           |||||||||||| |||||||||||||
Sbjct: 663 tgcttcaattttagacaatatttcat 638

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>dbj|AK112043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B09, full
            insert sequence
          Length = 1515

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 198  aacttgtggaattcgagggtgtcgcc 223
            |||||||| |||||||||||||||||
Sbjct: 1146 aacttgtgaaattcgagggtgtcgcc 1121

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>ref|XM_602751.2| PREDICTED: Bos taurus similar to chromosome 20 open reading frame 42,
            transcript variant 1 (LOC524427), mRNA
          Length = 4362

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 402  tttgctggaagcctcgatgca 422
            |||||||||||||||||||||
Sbjct: 2743 tttgctggaagcctcgatgca 2723

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>ref|XM_866049.1| PREDICTED: Bos taurus similar to chromosome 20 open reading frame 42,
            transcript variant 2 (LOC524427), mRNA
          Length = 4471

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 402  tttgctggaagcctcgatgca 422
            |||||||||||||||||||||
Sbjct: 2852 tttgctggaagcctcgatgca 2832

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>gb|AC142114.3| Mus musculus BAC clone RP23-421C24 from chromosome 14, complete
             sequence
          Length = 196408

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 288   gccagctgacctttccttcca 308
             |||||||||||||||||||||
Sbjct: 89406 gccagctgacctttccttcca 89426

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>gb|AC096658.1| Homo sapiens BAC clone RP11-29C24 from 7, complete sequence
          Length = 77142

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 299  tttccttccaggattctctccttgc 323
            ||||||||||||||| |||||||||
Sbjct: 7784 tttccttccaggattttctccttgc 7808

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>gb|AC142307.1| Pan troglodytes BAC clone RP43-131H12 from 7, complete sequence
          Length = 158646

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 299   tttccttccaggattctctccttgc 323
             ||||||||||||||| |||||||||
Sbjct: 43322 tttccttccaggattttctccttgc 43298

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>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor, exon
              cluster
          Length = 249555

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 347    ctgtacattgaagcccatggg 367
              |||||||||||||||||||||
Sbjct: 178446 ctgtacattgaagcccatggg 178466

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>emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chromosome 2, complete
             sequence
          Length = 181014

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 140   tatgctaccctctggcttccacatg 164
             |||||| ||||||||||||||||||
Sbjct: 63668 tatgctgccctctggcttccacatg 63692

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>gb|AC152076.4| Mus musculus BAC clone RP23-326O10 from chromosome 18, complete
             sequence
          Length = 215816

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   taccctctggcttccacatg 164
             ||||||||||||||||||||
Sbjct: 85547 taccctctggcttccacatg 85528

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>ref|XM_581880.2| PREDICTED: Bos taurus similar to cartilage intermediate layer
            protein, nucleotide pyrophosphohydrolase (LOC505573),
            mRNA
          Length = 5526

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  ctctggcttccacatgacgt 168
            ||||||||||||||||||||
Sbjct: 4837 ctctggcttccacatgacgt 4818

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>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019B24,
              complete sequence
          Length = 162385

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 200    cttgtggaattcgagggtgtcgcc 223
              |||||| |||||||||||||||||
Sbjct: 124402 cttgtgaaattcgagggtgtcgcc 124379

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>gb|AC113495.15| Mus musculus chromosome 9, clone RP23-361O11, complete sequence
          Length = 195356

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    accctctggcttccacatga 165
              ||||||||||||||||||||
Sbjct: 112273 accctctggcttccacatga 112292

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>gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 map 3, complete sequence
          Length = 191014

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    atgctaccctctggcttccacatg 164
              |||||| |||||||||||||||||
Sbjct: 125165 atgctatcctctggcttccacatg 125188

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>gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosome 3, complete sequence
          Length = 210014

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    atgctaccctctggcttccacatg 164
              |||||| |||||||||||||||||
Sbjct: 153532 atgctatcctctggcttccacatg 153555

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>gb|AC144503.17| Medicago truncatula clone mth2-13f22, complete sequence
          Length = 116810

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   ctgctgctgcttcaattttc 389
             ||||||||||||||||||||
Sbjct: 74212 ctgctgctgcttcaattttc 74193

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>gb|AC090329.6| Homo sapiens chromosome 18, clone RP11-793M6, complete sequence
          Length = 141741

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   atttcatttgctggaagcct 415
             ||||||||||||||||||||
Sbjct: 19488 atttcatttgctggaagcct 19507

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>gb|AC090163.10| Homo sapiens chromosome 11, clone RP11-706A13, complete sequence
          Length = 194642

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 545    aacaacaagctgtgctgggt 564
              ||||||||||||||||||||
Sbjct: 155855 aacaacaagctgtgctgggt 155836

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>emb|AL645643.7| Mouse DNA sequence from clone RP23-253F13 on chromosome 13 Contains part
              of the Gmds gene for GDP-mannose 4, 6-dehydratase, complete
              sequence
          Length = 185384

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 152    tggcttccacatgacgtccttcag 175
              ||||||||| ||||||||||||||
Sbjct: 154813 tggcttccagatgacgtccttcag 154790

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>gb|AC110012.5| Homo sapiens chromosome 8, clone CTD-2024L13, complete sequence
          Length = 163126

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   tgctaccctctggcttccacatga 165
             |||||||||||||| |||||||||
Sbjct: 29768 tgctaccctctggcctccacatga 29791

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>gb|AC103854.2| Homo sapiens chromosome 11, clone RP11-104M24, complete sequence
          Length = 152529

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   aacaacaagctgtgctgggt 564
             ||||||||||||||||||||
Sbjct: 77184 aacaacaagctgtgctgggt 77165

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>gb|AC091044.9| Homo sapiens chromosome 18, clone RP11-694H12, complete sequence
          Length = 172179

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   tgaggccctgagaggtagag 497
             ||||||||||||||||||||
Sbjct: 62629 tgaggccctgagaggtagag 62648

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>gb|AC093328.3| Homo sapiens chromosome 8, clone RP11-30J20, complete sequence
          Length = 163640

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    atagaacatgaaaaaacatccata 42
             |||||||||||||||||| |||||
Sbjct: 99066 atagaacatgaaaaaacaaccata 99089

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>gb|AC161113.2| Mus musculus BAC clone RP24-362N9 from chromosome 9, complete sequence
          Length = 171642

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   accctctggcttccacatga 165
             ||||||||||||||||||||
Sbjct: 47063 accctctggcttccacatga 47082

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>gb|AC008822.7| Homo sapiens chromosome 5 clone CTD-2129H18, complete sequence
          Length = 68754

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 570   ggattcgttgaaaatagagttgat 593
             ||||| ||||||||||||||||||
Sbjct: 13604 ggatttgttgaaaatagagttgat 13581

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>gb|AC024587.5| Homo sapiens chromosome 5 clone RP11-252I13, complete sequence
          Length = 178492

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 570    ggattcgttgaaaatagagttgat 593
              ||||| ||||||||||||||||||
Sbjct: 114472 ggatttgttgaaaatagagttgat 114495

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 200     cttgtggaattcgagggtgtcgcc 223
               |||||| |||||||||||||||||
Sbjct: 1609866 cttgtgaaattcgagggtgtcgcc 1609843

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 68       ttttatcttctacctcctaacatt 91
                |||| |||||||||||||||||||
Sbjct: 18881681 ttttttcttctacctcctaacatt 18881658

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 566      cccgggattcgttgaaaata 585
                ||||||||||||||||||||
Sbjct: 12337227 cccgggattcgttgaaaata 12337208

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>gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, complete sequence
          Length = 196848

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    tcagtttgcttctcaaaaag 466
              ||||||||||||||||||||
Sbjct: 133682 tcagtttgcttctcaaaaag 133701

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>gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complete sequence
          Length = 166660

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     aggactttcctgaggttcct 61
              ||||||||||||||||||||
Sbjct: 100499 aggactttcctgaggttcct 100518

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>gb|AF445393.1|F445385S08 Homo sapiens MAP4K3 (MAP4K3) gene, exons 9 through 12
          Length = 1434

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 447  tcagtttgcttctcaaaaag 466
            ||||||||||||||||||||
Sbjct: 1326 tcagtttgcttctcaaaaag 1345

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>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0705A04
          Length = 182468

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   cccgggattcgttgaaaata 585
             ||||||||||||||||||||
Sbjct: 17364 cccgggattcgttgaaaata 17345

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 200     cttgtggaattcgagggtgtcgcc 223
               |||||| |||||||||||||||||
Sbjct: 1607587 cttgtgaaattcgagggtgtcgcc 1607564

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>emb|AL772137.8| Mouse DNA sequence from clone RP23-229A22 on chromosome 4, complete
            sequence
          Length = 165975

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 141  atgctaccctctggcttccacatg 164
            ||||||||||||||| ||||||||
Sbjct: 7045 atgctaccctctggcctccacatg 7068

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>emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chromosome 17, complete
              sequence
          Length = 199300

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 326    cttcagcttgtagttgcgcttctg 349
              ||||||||| ||||||||||||||
Sbjct: 167072 cttcagcttctagttgcgcttctg 167095


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,399,449
Number of Sequences: 3902068
Number of extensions: 5399449
Number of successful extensions: 96860
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96642
Number of HSP's gapped (non-prelim): 215
length of query: 599
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 576
effective length of database: 17,143,297,704
effective search space: 9874539477504
effective search space used: 9874539477504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result