Clone Name | rbah63d06 |
---|---|
Clone Library Name | barley_pub |
>emb|AL158193.13| Human DNA sequence from clone RP11-400N12 on chromosome 13 Contains the 3' end of the UBL3 gene for ubiquitin-like 3 and a CpG island, complete sequence Length = 172896 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 509 ctccctgccctgctctgcaagga 531 ||||||||||||||||||||||| Sbjct: 134234 ctccctgccctgctctgcaagga 134256
>gb|AC115064.9| Mus musculus chromosome 1, clone RP24-401B18, complete sequence Length = 184893 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ggatcaattaaatccaaatca 416 ||||||||||||||||||||| Sbjct: 30869 ggatcaattaaatccaaatca 30889
>gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-284P20, complete sequence Length = 203967 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 aagctccctgccctgctctgc 526 ||||||||||||||||||||| Sbjct: 81779 aagctccctgccctgctctgc 81759
>emb|AL805961.22| Human DNA sequence from clone RP11-718D19 on chromosome 1, complete sequence Length = 166258 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 509 ctccctgccctgctctgcaaggaac 533 ||||||||||||||||| ||||||| Sbjct: 116091 ctccctgccctgctctggaaggaac 116115
>gb|AC012352.7| Homo sapiens BAC clone RP11-12M21 from 2, complete sequence Length = 168142 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 tgataaactacaacagatcat 217 ||||||||||||||||||||| Sbjct: 134418 tgataaactacaacagatcat 134438
>gb|AC009227.3|AC009227 Homo sapiens BAC clone RP11-187G20 from 2, complete sequence Length = 174149 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 attcatattcactgccatataatgttcta 122 |||||| ||||||| |||||||||||||| Sbjct: 5310 attcattttcactggcatataatgttcta 5338
>gb|AC110033.9| Mus musculus chromosome 1, clone RP23-117O18, complete sequence Length = 260404 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ggatcaattaaatccaaatca 416 ||||||||||||||||||||| Sbjct: 57941 ggatcaattaaatccaaatca 57921
>gb|AC108796.10| Mus musculus chromosome 1, clone RP23-349L18, complete sequence Length = 188713 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ggatcaattaaatccaaatca 416 ||||||||||||||||||||| Sbjct: 72460 ggatcaattaaatccaaatca 72440
>dbj|AB011667.1| Ipomoea purpurea genes for dihydroflavonol 4-reductase, complete cds Length = 16845 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 tcccatgcatgcatgcaaata 147 ||||||||||||||||||||| Sbjct: 2140 tcccatgcatgcatgcaaata 2160
>emb|AL671871.4| Mouse DNA sequence from clone RP23-157M14 on chromosome 4, complete sequence Length = 199593 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 359 aatggaccaaagctggcttca 379 ||||||||||||||||||||| Sbjct: 19356 aatggaccaaagctggcttca 19376
>ref|NM_106003.2| Arabidopsis thaliana calcium ion binding AT1G73440 mRNA, complete cds Length = 988 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 tacataagtcatcttcttag 289 |||||||||||||||||||| Sbjct: 912 tacataagtcatcttcttag 931
>gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OABb-433A1, complete sequence Length = 161653 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 cttctccagctgaagctccc 513 |||||||||||||||||||| Sbjct: 45290 cttctccagctgaagctccc 45309
>ref|XM_630965.1| Dictyostelium discoideum hypothetical protein (DDB0188520), partial mRNA Length = 2694 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 gatcaattaaatccaaatca 416 |||||||||||||||||||| Sbjct: 2302 gatcaattaaatccaaatca 2283
>gb|AC101948.10| Mus musculus chromosome 15, clone RP24-139K14, complete sequence Length = 182534 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 646 ccaatgctattgtctttata 665 |||||||||||||||||||| Sbjct: 147055 ccaatgctattgtctttata 147036
>gb|AC115719.10| Mus musculus chromosome 18, clone RP24-356J16, complete sequence Length = 177037 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 672 tcaaaacttctgatgaaatt 691 |||||||||||||||||||| Sbjct: 176344 tcaaaacttctgatgaaatt 176325
>gb|AC147708.7| Canis Familiaris, clone XX-25G10, complete sequence Length = 185084 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tctccagctgaagctccctg 515 |||||||||||||||||||| Sbjct: 57108 tctccagctgaagctccctg 57089
>gb|AY812459.1| Schistosoma japonicum SJCHGC04555 protein mRNA, partial cds Length = 914 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 attcagtacgaagaatgtga 609 |||||||||||||||||||| Sbjct: 703 attcagtacgaagaatgtga 684
>gb|AC153530.9| Mus musculus 10 BAC RP23-202A18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 192392 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 atttcccatgcatgcatgca 143 |||||||||||||||||||| Sbjct: 110727 atttcccatgcatgcatgca 110746
>ref|XM_001002894.1| PREDICTED: Mus musculus similar to 60S ribosomal protein L29 (LOC672948), mRNA Length = 691 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 ctgagcacctttggaagcct 492 |||||||||||||||||||| Sbjct: 516 ctgagcacctttggaagcct 497
>ref|XM_911987.2| PREDICTED: Mus musculus similar to 60S ribosomal protein L29 (LOC240110), mRNA Length = 592 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 ctgagcacctttggaagcct 492 |||||||||||||||||||| Sbjct: 417 ctgagcacctttggaagcct 398
>ref|XM_140042.8| PREDICTED: Mus musculus similar to 60S ribosomal protein L29 (LOC240110), mRNA Length = 592 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 ctgagcacctttggaagcct 492 |||||||||||||||||||| Sbjct: 417 ctgagcacctttggaagcct 398
>gb|AC141478.3| Mus musculus BAC clone RP24-82N16 from chromosome 18, complete sequence Length = 184122 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 672 tcaaaacttctgatgaaatt 691 |||||||||||||||||||| Sbjct: 61117 tcaaaacttctgatgaaatt 61098
>gb|AC132310.3| Mus musculus BAC clone RP24-295G16 from chromosome 16, complete sequence Length = 136671 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 gaatgtgacaaagtcaactt 621 |||||||||||||||||||| Sbjct: 15745 gaatgtgacaaagtcaactt 15726
>ref|XM_801027.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507873.60) partial mRNA Length = 849 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ttcaagtttatatcatagta 50 |||||||||||||||||||| Sbjct: 422 ttcaagtttatatcatagta 403
>ref|XM_803165.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510691.10) partial mRNA Length = 849 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ttcaagtttatatcatagta 50 |||||||||||||||||||| Sbjct: 422 ttcaagtttatatcatagta 403
>gb|AC123053.4| Mus musculus BAC clone RP24-374O20 from chromosome 7, complete sequence Length = 184618 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 551 ggactgaatgtgaaatgtcatcaa 574 ||||||||||||||||||| |||| Sbjct: 167104 ggactgaatgtgaaatgtcctcaa 167081
>gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete sequence Length = 125467 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ttcccatgcatgcatgcaaa 145 |||||||||||||||||||| Sbjct: 60973 ttcccatgcatgcatgcaaa 60992
>emb|AL445591.10| Human DNA sequence from clone RP11-314N2 on chromosome 1 Contains a novel processed pseudogene, the GJA8 gene for gap junction protein alpha 8, 50kDa (connexin 50) protein, the 5' end of the gene for putative G-protein coupled receptor (SH120) and a CpG island, complete sequence Length = 140092 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 665 agggatatcaaaacttctga 684 |||||||||||||||||||| Sbjct: 119497 agggatatcaaaacttctga 119478
>emb|AL360232.24| Human DNA sequence from clone RP11-374I18 on chromosome 6, complete sequence Length = 157784 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 aaacacctcttctcttcaagttta 40 |||||||||||||||||| ||||| Sbjct: 138455 aaacacctcttctcttcacgttta 138432
>gb|AC091536.2| Rattus norvegicus strain Brown Norway clone RP31-547A5, complete sequence Length = 175512 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 agctccctgccctgctctgc 526 |||||||||||||||||||| Sbjct: 95991 agctccctgccctgctctgc 95972
>emb|AL137009.8| Human DNA sequence from clone RP3-370O5 on chromosome 6 Contains the 5' end of a novel gene containing FLJ13942 and a CpG island, complete sequence Length = 113254 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 aaactacaacagatcatatt 220 |||||||||||||||||||| Sbjct: 81366 aaactacaacagatcatatt 81347
>emb|AL121978.5|HSJ520B18 Human DNA sequence from clone RP3-520B18 on chromosome 6p24.1-25.3 Contains the 5' end of the gene for phenylalanine-tRNA synthetase (FARS1), a microtubule-associated protein 1A/1B light chain 3 pseudogene and a CpG island, complete sequence Length = 148385 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 aaatgaccatgataaactac 207 |||||||||||||||||||| Sbjct: 90328 aaatgaccatgataaactac 90347
>gb|AC158567.3| Mus musculus chromosome 15, clone RP24-93F2, complete sequence Length = 188718 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 646 ccaatgctattgtctttata 665 |||||||||||||||||||| Sbjct: 124215 ccaatgctattgtctttata 124196
>gb|AC159819.2| Mus musculus BAC clone RP23-180C14 from chromosome 9, complete sequence Length = 211119 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 ccctgccctgctctgcaagg 530 |||||||||||||||||||| Sbjct: 178712 ccctgccctgctctgcaagg 178693
>gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete sequence Length = 139728 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ttcccatgcatgcatgcaaa 145 |||||||||||||||||||| Sbjct: 78684 ttcccatgcatgcatgcaaa 78665
>gb|AC026385.19|AC026385 Mus musculus 17 BAC RP23-413K14 complete sequence Length = 222610 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 ctgagcacctttggaagcct 492 |||||||||||||||||||| Sbjct: 118560 ctgagcacctttggaagcct 118541
>gb|AC152945.1| Mus musculus 10 BAC RP23-257F18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175982 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ctccctgccctgctctgcaa 528 |||||||||||||||||||| Sbjct: 103977 ctccctgccctgctctgcaa 103996
>gb|AC159473.7| Mus musculus 10 BAC RP23-215E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190387 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 ctccctgccctgctctgcaa 528 |||||||||||||||||||| Sbjct: 174597 ctccctgccctgctctgcaa 174578
>gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L24 genomic sequence, complete sequence Length = 90459 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 tacataagtcatcttcttag 289 |||||||||||||||||||| Sbjct: 40677 tacataagtcatcttcttag 40658
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 659 ctttatagggatatcaaaac 678 |||||||||||||||||||| Sbjct: 1179782 ctttatagggatatcaaaac 1179763
>emb|CT025760.12| Mouse DNA sequence from clone RP23-351E9 on chromosome 17, complete sequence Length = 128479 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 ctgagcacctttggaagcct 492 |||||||||||||||||||| Sbjct: 80144 ctgagcacctttggaagcct 80125
>gb|AC149062.3| Mus musculus BAC clone RP23-183E20 from 7, complete sequence Length = 229956 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 551 ggactgaatgtgaaatgtcatcaa 574 ||||||||||||||||||| |||| Sbjct: 80992 ggactgaatgtgaaatgtcctcaa 80969
>gb|AC170807.2| Mus musculus BAC clone RP23-374I2 from chromosome 17, complete sequence Length = 208318 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 ctgagcacctttggaagcct 492 |||||||||||||||||||| Sbjct: 52329 ctgagcacctttggaagcct 52310 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,258,443 Number of Sequences: 3902068 Number of extensions: 6258443 Number of successful extensions: 139422 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139293 Number of HSP's gapped (non-prelim): 129 length of query: 700 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 677 effective length of database: 17,143,297,704 effective search space: 11606012545608 effective search space used: 11606012545608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)