ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62o06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY376457.1| Meriones unguiculatus follicle stimulating hormon... 40 2.2
2gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC... 40 2.2
3gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nippon... 40 2.2
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.2
6gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, comp... 38 8.5
7emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 m... 38 8.5
8emb|AL954248.1| Pan troglodytes chromosome 22 clone PTB-061A04 m... 38 8.5
9emb|BX324205.5| Zebrafish DNA sequence from clone CH211-10K1 in ... 38 8.5
10dbj|AP006273.1| Papio hamadryas genomic DNA, BAC clone: RPCI41-3... 38 8.5
11dbj|AP006271.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-1... 38 8.5
12dbj|AP001754.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 8.5
13emb|AL672101.22| Mouse DNA sequence from clone RP23-170E12 on ch... 38 8.5
14gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, comp... 38 8.5
15dbj|AP001067.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 38 8.5

>gb|AY376457.1| Meriones unguiculatus follicle stimulating hormone beta subunit
            (FSH-beta) mRNA, complete cds
          Length = 1640

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  atggacagacaaaagagaag 173
            ||||||||||||||||||||
Sbjct: 1472 atggacagacaaaagagaag 1453



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>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence,
             complete sequence
          Length = 90142

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 150   aaaaatggacagacaaaagagaag 173
             ||||||||||||||| ||||||||
Sbjct: 61121 aaaaatggacagacagaagagaag 61098



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>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045C13, from Chromosome 10, complete sequence
          Length = 161250

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 37     tgcccatacatacattgntacat 59
              ||||||||||||||||| |||||
Sbjct: 106400 tgcccatacatacattgctacat 106422



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 37      tgcccatacatacattgntacat 59
               ||||||||||||||||| |||||
Sbjct: 9873921 tgcccatacatacattgctacat 9873943



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 37      tgcccatacatacattgntacat 59
               ||||||||||||||||| |||||
Sbjct: 9879960 tgcccatacatacattgctacat 9879982



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>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 146    aaacaaaaatggacagaca 164
              |||||||||||||||||||
Sbjct: 147310 aaacaaaaatggacagaca 147328



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>emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 map 22q22.3, complete
             sequence
          Length = 182974

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 146   aaacaaaaatggacagaca 164
             |||||||||||||||||||
Sbjct: 12703 aaacaaaaatggacagaca 12721



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>emb|AL954248.1| Pan troglodytes chromosome 22 clone PTB-061A04 map 22q22.3, complete
              sequence
          Length = 162730

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 146    aaacaaaaatggacagaca 164
              |||||||||||||||||||
Sbjct: 157817 aaacaaaaatggacagaca 157835



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>emb|BX324205.5| Zebrafish DNA sequence from clone CH211-10K1 in linkage group 14,
              complete sequence
          Length = 168546

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 153    aatggacagacaaaagaga 171
              |||||||||||||||||||
Sbjct: 105060 aatggacagacaaaagaga 105078



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>dbj|AP006273.1| Papio hamadryas genomic DNA, BAC clone: RPCI41-30J10, chromosome 3,
             complete sequence
          Length = 183435

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 146   aaacaaaaatggacagaca 164
             |||||||||||||||||||
Sbjct: 39194 aaacaaaaatggacagaca 39212



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>dbj|AP006271.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-155P15, chromosome 22,
             complete sequence
          Length = 129950

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 146   aaacaaaaatggacagaca 164
             |||||||||||||||||||
Sbjct: 58052 aaacaaaaatggacagaca 58070



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>dbj|AP001754.1| Homo sapiens genomic DNA, chromosome 21q, section 98/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 146    aaacaaaaatggacagaca 164
              |||||||||||||||||||
Sbjct: 260558 aaacaaaaatggacagaca 260576



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>emb|AL672101.22| Mouse DNA sequence from clone RP23-170E12 on chromosome X, complete
              sequence
          Length = 159735

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 146    aaacaaaaatggacagaca 164
              |||||||||||||||||||
Sbjct: 139914 aaacaaaaatggacagaca 139896



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>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence
          Length = 103709

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 146   aaacaaaaatggacagaca 164
             |||||||||||||||||||
Sbjct: 33422 aaacaaaaatggacagaca 33404



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>dbj|AP001067.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1399C7, MX1-D21S171
             region, complete sequence
          Length = 148845

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 146   aaacaaaaatggacagaca 164
             |||||||||||||||||||
Sbjct: 30390 aaacaaaaatggacagaca 30408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,214,983
Number of Sequences: 3902068
Number of extensions: 1214983
Number of successful extensions: 57061
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57018
Number of HSP's gapped (non-prelim): 43
length of query: 174
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 152
effective length of database: 17,147,199,772
effective search space: 2606374365344
effective search space used: 2606374365344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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