ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62o02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 147 5e-32
2gb|AC084287.9| Mus Musculus S train C57BL6/J chromosome 1 BAC, ... 46 0.15
3gb|AC126050.3| Mus musculus BAC clone RP23-236L17 from 1, comple... 46 0.15
4ref|XM_481050.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
5gb|AY022685.1| Oryza sativa microsatellite MRG5010 containing (C... 42 2.3
6gb|AC119822.38| Mus musculus chromosome 13, clone RP23-202P22, c... 42 2.3
7gb|AC115291.7| Mus musculus BAC clone RP23-65P2 from 15, complet... 42 2.3
8emb|AL672238.1| Human DNA sequence from clone RP11-293G6 on chro... 42 2.3
9gb|AC109586.2| Homo sapiens chromosome 3 clone CTD-2008P21, comp... 42 2.3
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
11gb|AC093412.3| Homo sapiens chromosome 3 clone RP11-11L6, comple... 42 2.3
12dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
13gb|AE001439.1| Helicobacter pylori J99, complete genome 42 2.3
14gb|AC154880.17| Mus musculus chromosome 15, clone RP24-191N3, co... 42 2.3
15emb|CT010503.10| Mouse DNA sequence from clone RP23-461N23 on ch... 42 2.3
16ref|XM_637340.1| Dictyostelium discoideum hypothetical protein (... 40 9.0
17gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosom... 40 9.0
18gb|AC169504.1| Mus musculus BAC clone RP23-416K3 from chromosome... 40 9.0
19ref|NM_001003699.1| Homo sapiens ras responsive element binding ... 40 9.0
20ref|NM_001003698.1| Homo sapiens ras responsive element binding ... 40 9.0
21ref|NM_002955.4| Homo sapiens ras responsive element binding pro... 40 9.0
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.0
23gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosom... 40 9.0
24gb|AC122036.3| Mus musculus BAC clone RP24-420C18 from chromosom... 40 9.0
25gb|AC130548.3| Mus musculus BAC clone RP24-456F12 from chromosom... 40 9.0
26gb|AC023669.8| Homo sapiens BAC clone RP11-432O19 from 7, comple... 40 9.0
27gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete se... 40 9.0
28gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete se... 40 9.0
29emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chr... 40 9.0
30emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on ch... 40 9.0
31emb|AL161423.9| Human DNA sequence from clone RP11-168J5 on chro... 40 9.0
32emb|AL139095.15| Human DNA sequence from clone RP11-69L16 on chr... 40 9.0
33emb|AL021578.4|HS453C12 Human DNA sequence from clone RP3-453C12... 40 9.0
34gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, com... 40 9.0
35emb|AL663029.11| Mouse DNA sequence from clone RP23-355B12 on ch... 40 9.0
36gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Canc... 40 9.0
37gb|AC026130.15| Homo sapiens chromosome 17, clone RP11-801J18, c... 40 9.0
38gb|AC025518.8| Homo sapiens chromosome 17, clone RP11-713H12, co... 40 9.0
39emb|BX914206.10| Zebrafish DNA sequence from clone CH211-174J14 ... 40 9.0
40gb|AC008676.6| Homo sapiens chromosome 5 clone CTB-47B11, comple... 40 9.0
41gb|AC157214.2| Mus musculus BAC clone RP23-35J2 from chromosome ... 40 9.0
42gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR ... 40 9.0
43gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q... 40 9.0
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
46gb|AF314058.1|AF314058 Homo sapiens chromosome 20 clone GS1-430E... 40 9.0
47dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
48dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
49dbj|AB019352.1| Homo sapiens mRNA for Zinc-finger motif-Enhancer... 40 9.0
50dbj|AB019351.1| Homo sapiens mRNA for zinc-finger motif-enhancer... 40 9.0
51dbj|AB019254.1| Homo sapiens mRNA for zinc-finger motif-enhancer... 40 9.0
52gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, comple... 40 9.0
53emb|BX276085.8| Zebrafish DNA sequence from clone CH211-194B5 in... 40 9.0
54gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, com... 40 9.0
55gb|AY103930.1| Zea mays PCO070877 mRNA sequence 40 9.0
56gb|AF072825.1|AF072825 Homo sapiens Raf responsive zinc finger p... 40 9.0
57emb|CT009503.7| Pig DNA sequence from clone CH242-137E23 on chro... 40 9.0
58emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chro... 40 9.0
59gb|U26914.1|HSU26914 Human ras-responsive element binding protei... 40 9.0
60gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosom... 40 9.0
61emb|AL672293.14| Mouse DNA sequence from clone RP23-180D16 on ch... 40 9.0
62gb|AC091234.7| Oryza sativa chromosome 3 BAC OSJNBa0057E11 genom... 40 9.0 
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score =  147 bits (74), Expect = 5e-32
 Identities = 123/138 (89%), Gaps = 1/138 (0%)
 Strand = Plus / Plus

                                                                         
Query: 411   gatgtggagtagatgtgtgtgtgagaagcattccacctttgcatgcaa-gctatgcacct 469
             ||||||||||||||||||||| ||| |||| |||||||||||| | || ||| |||||||
Sbjct: 22579 gatgtggagtagatgtgtgtgagaggagcagtccacctttgcaagaaaagctttgcacct 22638

                                                                         
Query: 470   tcacatgacaatatgtgagagggcatggtgttttgtttgtgtggatagcttggtagaggt 529
             ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||  ||
Sbjct: 22639 tcacatgaccatatgtgagagggcatggtatgttgtttgtgtggatagcttggtagtagt 22698

                               
Query: 530   gcttgtgatgttgatgtg 547
             | || ||| |||||||||
Sbjct: 22699 ggttatgaagttgatgtg 22716



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 582   ttgtttgtgtggatagcttggtagaagtgcttgtgatgttgatgtg 627
             |||||||||||||||||||||||| |||| || ||| |||||||||
Sbjct: 22671 ttgtttgtgtggatagcttggtagtagtggttatgaagttgatgtg 22716
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>gb|AC084287.9| Mus Musculus S train C57BL6/J chromosome 1 BAC,  RP23-145H3 Complete
              Sequence, complete sequence
          Length = 201429

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 329    gtgtgagcttgttctagtgatta 351
              |||||||||||||||||||||||
Sbjct: 153152 gtgtgagcttgttctagtgatta 153174
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>gb|AC126050.3| Mus musculus BAC clone RP23-236L17 from 1, complete sequence
          Length = 143097

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 329   gtgtgagcttgttctagtgatta 351
             |||||||||||||||||||||||
Sbjct: 11702 gtgtgagcttgttctagtgatta 11680
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>ref|XM_481050.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 756

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 525 gaggtgcttgtgatgttgatg 545
           |||||||||||||||||||||
Sbjct: 664 gaggtgcttgtgatgttgatg 684
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>gb|AY022685.1| Oryza sativa microsatellite MRG5010 containing (CCG)X8, genomic
           sequence
          Length = 224

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 525 gaggtgcttgtgatgttgatg 545
           |||||||||||||||||||||
Sbjct: 66  gaggtgcttgtgatgttgatg 46
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>gb|AC119822.38| Mus musculus chromosome 13, clone RP23-202P22, complete sequence
          Length = 213736

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 620   ttgatgtgttatgacacacat 640
             |||||||||||||||||||||
Sbjct: 69048 ttgatgtgttatgacacacat 69068



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 540   ttgatgtgttatgacacacat 560
             |||||||||||||||||||||
Sbjct: 69048 ttgatgtgttatgacacacat 69068
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>gb|AC115291.7| Mus musculus BAC clone RP23-65P2 from 15, complete sequence
          Length = 237119

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    gcatcttcttttatttctttc 69
             |||||||||||||||||||||
Sbjct: 12706 gcatcttcttttatttctttc 12686
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>emb|AL672238.1| Human DNA sequence from clone RP11-293G6 on chromosome 1 Contains a
            NADH dehydrogenase 6 (MTND6) processed pseudogene, a NADH
            dehydrogenase 5 (MTND5) processed pseudogene, a NADH
            dehydrogenase 4 (MTND4) processed pseudogene, a NADH
            dehydrogenase 4L (MTND4L) processed pseudogene, a NADH
            dehydrogenase 3 (MTND3) processed pseudogene, a
            cytochrome c oxidase III (MTCO3) processed pseudogene and
            the 3' end of the GNG4 gene for guanine nucleotide
            binding protein (G protein), gamma 4, complete sequence
          Length = 39673

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 613  tgtgatgttgatgtgttatga 633
            |||||||||||||||||||||
Sbjct: 6550 tgtgatgttgatgtgttatga 6570



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 533  tgtgatgttgatgtgttatga 553
            |||||||||||||||||||||
Sbjct: 6550 tgtgatgttgatgtgttatga 6570
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>gb|AC109586.2| Homo sapiens chromosome 3 clone CTD-2008P21, complete sequence
          Length = 190170

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 488   gagggcatggtgttttgtttg 508
             |||||||||||||||||||||
Sbjct: 11457 gagggcatggtgttttgtttg 11437
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 525     gaggtgcttgtgatgttgatg 545
               |||||||||||||||||||||
Sbjct: 9478681 gaggtgcttgtgatgttgatg 9478701
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>gb|AC093412.3| Homo sapiens chromosome 3 clone RP11-11L6, complete sequence
          Length = 178447

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 488   gagggcatggtgttttgtttg 508
             |||||||||||||||||||||
Sbjct: 66636 gagggcatggtgttttgtttg 66656
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>dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0005L24
          Length = 155365

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 525  gaggtgcttgtgatgttgatg 545
            |||||||||||||||||||||
Sbjct: 8711 gaggtgcttgtgatgttgatg 8731
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 487     agagggcatggtgttttgttt 507
               |||||||||||||||||||||
Sbjct: 1348488 agagggcatggtgttttgttt 1348468
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>gb|AC154880.17| Mus musculus chromosome 15, clone RP24-191N3, complete sequence
          Length = 184220

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     gcatcttcttttatttctttc 69
              |||||||||||||||||||||
Sbjct: 174314 gcatcttcttttatttctttc 174294
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>emb|CT010503.10| Mouse DNA sequence from clone RP23-461N23 on chromosome 13, complete
             sequence
          Length = 195702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 540   ttgatgtgttatgacacacat 560
             |||||||||||||||||||||
Sbjct: 13897 ttgatgtgttatgacacacat 13877



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 620   ttgatgtgttatgacacacat 640
             |||||||||||||||||||||
Sbjct: 13897 ttgatgtgttatgacacacat 13877
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>ref|XM_637340.1| Dictyostelium discoideum hypothetical protein (DDB0205524), partial
            mRNA
          Length = 3642

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  atgtgttttgatcaagagca 394
            ||||||||||||||||||||
Sbjct: 3556 atgtgttttgatcaagagca 3575
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>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete
             sequence
          Length = 210846

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tcttcttttatttctttcct 71
             ||||||||||||||||||||
Sbjct: 44824 tcttcttttatttctttcct 44843
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>gb|AC169504.1| Mus musculus BAC clone RP23-416K3 from chromosome 17, complete sequence
          Length = 215554

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    acatgagggtgtgcatcttc 56
             ||||||||||||||||||||
Sbjct: 50957 acatgagggtgtgcatcttc 50976
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>ref|NM_001003699.1| Homo sapiens ras responsive element binding protein 1 (RREB1),
            transcript variant 1, mRNA
          Length = 7535

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  gtgtgtgtgagcttgttctagtga 348
            ||||||||||||||||||| ||||
Sbjct: 5899 gtgtgtgtgagcttgttcttgtga 5922
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>ref|NM_001003698.1| Homo sapiens ras responsive element binding protein 1 (RREB1),
            transcript variant 3, mRNA
          Length = 7370

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  gtgtgtgtgagcttgttctagtga 348
            ||||||||||||||||||| ||||
Sbjct: 5734 gtgtgtgtgagcttgttcttgtga 5757
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>ref|NM_002955.4| Homo sapiens ras responsive element binding protein 1 (RREB1),
            transcript variant 2, mRNA
          Length = 7555

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  gtgtgtgtgagcttgttctagtga 348
            ||||||||||||||||||| ||||
Sbjct: 5919 gtgtgtgtgagcttgttcttgtga 5942
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 52       tcttcttttatttctttcct 71
                ||||||||||||||||||||
Sbjct: 19573034 tcttcttttatttctttcct 19573053
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>gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosome 19, complete
             sequence
          Length = 227154

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    catcttcttttatttctttc 69
             ||||||||||||||||||||
Sbjct: 56176 catcttcttttatttctttc 56195
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>gb|AC122036.3| Mus musculus BAC clone RP24-420C18 from chromosome 8, complete sequence
          Length = 209062

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 404    tgtgggtgatgtggagtagatgtgtgtgtgag 435
              |||| |||||||| |||| |||||||||||||
Sbjct: 164983 tgtgtgtgatgtgtagtaaatgtgtgtgtgag 164952
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>gb|AC130548.3| Mus musculus BAC clone RP24-456F12 from chromosome 5, complete sequence
          Length = 170929

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   gggcatggtgttttgtttgt 509
             ||||||||||||||||||||
Sbjct: 49210 gggcatggtgttttgtttgt 49229
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>gb|AC023669.8| Homo sapiens BAC clone RP11-432O19 from 7, complete sequence
          Length = 207806

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 54     ttcttttatttctttcctgtctaacact 81
              ||||||||||||||| |||||| |||||
Sbjct: 111700 ttcttttatttcttttctgtcttacact 111673
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>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence
          Length = 111412

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   attacttgtgtagtgatctt 263
             ||||||||||||||||||||
Sbjct: 46952 attacttgtgtagtgatctt 46971
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>gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete sequence
          Length = 102831

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   attacttgtgtagtgatctt 263
             ||||||||||||||||||||
Sbjct: 10389 attacttgtgtagtgatctt 10408
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>emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chromosome 1 Contains a
             heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
             pseudogene, part of the RGS7 gene for regulator of
             G-protein signalling 7 and a ribosomal protein large P1
             (RPLP1) pseudogene, complete sequence
          Length = 155156

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    catcttcttttatttctttc 69
             ||||||||||||||||||||
Sbjct: 77191 catcttcttttatttctttc 77210
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>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the 5'
              end of the NTRK2 gene for Neurotrophic tyrosine kinase,
              receptor, type 2 (TRKB) and a CpG island, complete sequence
          Length = 182914

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 531    cttgtgatgttgatgtgtta 550
              ||||||||||||||||||||
Sbjct: 131682 cttgtgatgttgatgtgtta 131701



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 611    cttgtgatgttgatgtgtta 630
              ||||||||||||||||||||
Sbjct: 131682 cttgtgatgttgatgtgtta 131701
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>emb|AL161423.9| Human DNA sequence from clone RP11-168J5 on chromosome 13 Contains a
             CpG island, complete sequence
          Length = 164786

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tcttcttttatttctttcct 71
             ||||||||||||||||||||
Sbjct: 32134 tcttcttttatttctttcct 32153
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>emb|AL139095.15| Human DNA sequence from clone RP11-69L16 on chromosome 6 Contains the
             3' end of the RREB1 gene for ras responsive element
             binding protein 1, part of a novel gene, the SSR1 gene for
             signal sequence receptor alpha (translocon-associated
             protein alpha), the ATP5GP1 pseudogene (ATPsynthase, H+
             transporting, mitochondrial F0 complex, subunit c (subunit
             9)), a ribosomal protein S3 pseudogene, the CAGE1 gene for
             cancer antigen 1, the 5' end of the RIOK1 gene for RIO
             kinase 1 (yeast) and three CpG islands, complete sequence
          Length = 167206

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 325   gtgtgtgtgagcttgttctagtga 348
             ||||||||||||||||||| ||||
Sbjct: 9991  gtgtgtgtgagcttgttcttgtga 10014
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>emb|AL021578.4|HS453C12 Human DNA sequence from clone RP3-453C12 on chromosome 20q12-13.12
             Contains the MATN4 gene for matrilin 4, the RBPSUHL gene
             for recombining binding protein suppressor of hairless
             (Drosophila)-like, the SDC4 (syndecan 4 (amphiglycan,
             ryudocan)) gene, the C20orf169 gene for a novel protein
             similar to Drosophila CG11753, the C20orf10 gene for p53
             response element (clg01), the C20orf35 gene for
             uncharacterized hypothalamus protein, the C20orf10 gene,
             the PIGT gene for phosphatidyl inositol glycan class T, an
             NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
             (NDUFB4) pseudogene and CpG islands, complete sequence
          Length = 147620

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    cattttgttgagggcaacat 101
             ||||||||||||||||||||
Sbjct: 75624 cattttgttgagggcaacat 75605
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>gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, complete sequence
          Length = 188661

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   ccccctcactacatatacct 323
             ||||||||||||||||||||
Sbjct: 51115 ccccctcactacatatacct 51134
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>emb|AL663029.11| Mouse DNA sequence from clone RP23-355B12 on chromosome 11 Contains a
              novel gene, complete sequence
          Length = 170968

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 359    cataacatgtgtaggtatgtgttt 382
              ||||||||||| ||||||||||||
Sbjct: 131660 cataacatgtgcaggtatgtgttt 131683
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>gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 51070

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 46   tgtgcatcttcttttatttctttc 69
            |||||||||||||| |||||||||
Sbjct: 7686 tgtgcatcttctttaatttctttc 7663
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>gb|AC026130.15| Homo sapiens chromosome 17, clone RP11-801J18, complete sequence
          Length = 182909

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   tgtgtgtgtgagaagcattc 443
             ||||||||||||||||||||
Sbjct: 20561 tgtgtgtgtgagaagcattc 20542
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>gb|AC025518.8| Homo sapiens chromosome 17, clone RP11-713H12, complete sequence
          Length = 176355

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   tgtgtgtgtgagaagcattc 443
             ||||||||||||||||||||
Sbjct: 84325 tgtgtgtgtgagaagcattc 84306
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>emb|BX914206.10| Zebrafish DNA sequence from clone CH211-174J14 in linkage group 18,
             complete sequence
          Length = 139321

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   tgcatgcaagctatgcacct 469
             ||||||||||||||||||||
Sbjct: 98702 tgcatgcaagctatgcacct 98721
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>gb|AC008676.6| Homo sapiens chromosome 5 clone CTB-47B11, complete sequence
          Length = 208065

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 358    tcataacatgtgtaggtatgtgttttga 385
              |||||||||||||||  |||||||||||
Sbjct: 166107 tcataacatgtgtagtaatgtgttttga 166080
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>gb|AC157214.2| Mus musculus BAC clone RP23-35J2 from chromosome 19, complete sequence
          Length = 207625

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     catcttcttttatttctttc 69
              ||||||||||||||||||||
Sbjct: 152808 catcttcttttatttctttc 152827
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>gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete
              sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     catcttcttttatttctttc 69
              ||||||||||||||||||||
Sbjct: 106221 catcttcttttatttctttc 106240
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>gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence
          Length = 182617

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     catcttcttttatttctttc 69
              ||||||||||||||||||||
Sbjct: 111275 catcttcttttatttctttc 111294
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 471     cacatgacaatatgtgagag 490
               ||||||||||||||||||||
Sbjct: 1426031 cacatgacaatatgtgagag 1426012
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 52       tcttcttttatttctttcct 71
                ||||||||||||||||||||
Sbjct: 19566061 tcttcttttatttctttcct 19566080
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>gb|AF314058.1|AF314058 Homo sapiens chromosome 20 clone GS1-430E01 map 20q12-q13.12, complete
              sequence
          Length = 189656

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     cattttgttgagggcaacat 101
              ||||||||||||||||||||
Sbjct: 110226 cattttgttgagggcaacat 110245
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   cacatgacaatatgtgagag 490
             ||||||||||||||||||||
Sbjct: 33317 cacatgacaatatgtgagag 33298
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 471    cacatgacaatatgtgagag 490
              ||||||||||||||||||||
Sbjct: 134570 cacatgacaatatgtgagag 134551
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>dbj|AB019352.1| Homo sapiens mRNA for Zinc-finger motif-Enhancer binding-Protein-1
            gamma, complete cds
          Length = 5795

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  gtgtgtgtgagcttgttctagtga 348
            ||||||||||||||||||| ||||
Sbjct: 5103 gtgtgtgtgagcttgttcttgtga 5126
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>dbj|AB019351.1| Homo sapiens mRNA for zinc-finger motif-enhancer binding-protein-1
            beta, complete cds
          Length = 6428

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  gtgtgtgtgagcttgttctagtga 348
            ||||||||||||||||||| ||||
Sbjct: 5736 gtgtgtgtgagcttgttcttgtga 5759
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>dbj|AB019254.1| Homo sapiens mRNA for zinc-finger motif-enhancer binding-protein-1,
            complete cds
          Length = 6593

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  gtgtgtgtgagcttgttctagtga 348
            ||||||||||||||||||| ||||
Sbjct: 5901 gtgtgtgtgagcttgttcttgtga 5924
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>gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, complete sequence
          Length = 193466

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 490    gggcatggtgttttgtttgt 509
              ||||||||||||||||||||
Sbjct: 102959 gggcatggtgttttgtttgt 102940
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>emb|BX276085.8| Zebrafish DNA sequence from clone CH211-194B5 in linkage group 19,
             complete sequence
          Length = 202683

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    atcttcttttatttctttcc 70
             ||||||||||||||||||||
Sbjct: 58940 atcttcttttatttctttcc 58921
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>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence
          Length = 209151

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  ccccctcactacatatacct 323
            ||||||||||||||||||||
Sbjct: 9797 ccccctcactacatatacct 9816
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>gb|AY103930.1| Zea mays PCO070877 mRNA sequence
          Length = 829

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 gctttgagtagagttgtgtg 188
           ||||||||||||||||||||
Sbjct: 728 gctttgagtagagttgtgtg 747
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>gb|AF072825.1|AF072825 Homo sapiens Raf responsive zinc finger protein (RREB1) mRNA, partial
            cds
          Length = 3637

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  gtgtgtgtgagcttgttctagtga 348
            ||||||||||||||||||| ||||
Sbjct: 1931 gtgtgtgtgagcttgttcttgtga 1954
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>emb|CT009503.7| Pig DNA sequence from clone CH242-137E23 on chromosome 7, complete
              sequence
          Length = 222099

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 328    tgtgtgagcttgttctagtgatta 351
              |||||||| |||||||||||||||
Sbjct: 142411 tgtgtgagtttgttctagtgatta 142388
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>emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chromosome 2, complete
             sequence
          Length = 204020

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   tgggttgttttatgttagta 206
             ||||||||||||||||||||
Sbjct: 76019 tgggttgttttatgttagta 76000
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>gb|U26914.1|HSU26914 Human ras-responsive element binding protein (RREB-1) mRNA, complete
            cds
          Length = 3576

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  gtgtgtgtgagcttgttctagtga 348
            ||||||||||||||||||| ||||
Sbjct: 2884 gtgtgtgtgagcttgttcttgtga 2907
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>gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosome 10, complete
             sequence
          Length = 200663

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    tcttcttttatttctttcct 71
             ||||||||||||||||||||
Sbjct: 18914 tcttcttttatttctttcct 18895
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>emb|AL672293.14| Mouse DNA sequence from clone RP23-180D16 on chromosome X, complete
              sequence
          Length = 177087

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    gtggagtagatgtgtgtgtg 433
              ||||||||||||||||||||
Sbjct: 129576 gtggagtagatgtgtgtgtg 129595
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>gb|AC091234.7| Oryza sativa chromosome 3 BAC OSJNBa0057E11 genomic sequence, complete
              sequence
          Length = 138716

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tcttcttttatttctttcct 71
              ||||||||||||||||||||
Sbjct: 102725 tcttcttttatttctttcct 102706


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,255,638
Number of Sequences: 3902068
Number of extensions: 7255638
Number of successful extensions: 154538
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154205
Number of HSP's gapped (non-prelim): 332
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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