ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah63c21 |
|---|---|
| Clone Library Name | barley_pub |
>SNIP_HUMAN (Q9C0H9) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1055 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -2 Query: 490 GHHPAXDGQDPEAGGHGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPP 320 G P D + P+A H + P +E RRG DE+ PR R+ +P ++PP Sbjct: 829 GPAPTPDHKPPKA----PHGQKAAPRTEPSGRRGSDEL----TVPRYRTEKPSKSPP 877
>SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1250 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -2 Query: 490 GHHPAXDGQDPEAGGHGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPP 320 G P D + P+A H + P +E RRG DE+ PR R+ +P ++PP Sbjct: 1024 GPAPTPDHKPPKA----PHGQKAAPRTEPSGRRGSDEL----TVPRYRTEKPSKSPP 1072
>SNIP_RAT (Q9QXY2) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1197 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -2 Query: 490 GHHPAXDGQDPEAGGHGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPP 320 G P D + P+A H + P +E RRG DE+ PR R+ +P ++PP Sbjct: 991 GPTPTPDHKPPKA----PHGQKAAPRTEPSGRRGSDEL----TVPRYRTEKPSKSPP 1039
>VASA_DROME (P09052) ATP-dependent RNA helicase vasa (EC 3.6.1.-) (Antigen| Mab46F11) Length = 661 Score = 30.8 bits (68), Expect = 2.5 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = -2 Query: 520 FQSVQGQV*DGHHPAXDGQDPEAGGHGDHQGRCGPASEDKERRGRDEME*PDRGPRRR 347 F+ QG G + GQ GG G +GR + ERRGR + E +RG RR Sbjct: 100 FRGGQGGSRGGQGGSRGGQGGFRGGEGGFRGRLYENEDGDERRGRLDRE--ERGGERR 155
>P5I11_HUMAN (O14683) Tumor protein p53-inducible protein 11 (p53-induced| protein 11) Length = 177 Score = 30.8 bits (68), Expect = 2.5 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 13/73 (17%) Frame = -2 Query: 442 GDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPG-------------EAPPCCEDIL 302 G+H G G +RGR E E G R+ PG E PPCC ++ Sbjct: 84 GNHHGYSGCPETLLGKRGRAEWE---AGTLRKGPSPGICLLLPKPVPLPKELPPCCRALV 140 Query: 301 DTWGRETIATPRN 263 W R T A+ R+ Sbjct: 141 --WPRATTASHRH 151
>ADEC_DEHE1 (Q3Z8C6) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)| Length = 571 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = -2 Query: 517 QSVQGQV*DGHHPAXDGQD----PEAGGHGDHQGRCGPASEDKERRGR 386 ++ G+V DGH P G+D AG H DH+ C E KE+ R Sbjct: 188 EAASGKVLDGHAPGLSGKDLNAYISAGIHSDHE--CIQLDEAKEKLAR 233
>YCF2_LOTJA (Q9B1K6) Protein ycf2| Length = 2298 Score = 30.0 bits (66), Expect = 4.3 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +1 Query: 229 SICQFSQFLMLYFGASLLFLVPKCPVCLHNKEELLPDERTVFVVHDLAIPSHPVRDALY 405 S+C F +L+F LLFL P + +P R+ +++L P+HP+ + L+ Sbjct: 868 SLCFFLYKFLLFFSKFLLFLSKSLPFFFVSFGS-IPIHRSEIHIYELKSPNHPLCNQLF 925
>AROA_LISIN (Q92A85) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 428 Score = 30.0 bits (66), Expect = 4.3 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = -3 Query: 450 EGTVIIRDDVDLLVK----IKSVADGM-RWNSQIVDHEDGPLVREKLLLVVKTYWTLGDE 286 EGT II+D +L VK I +VA+ + + + I EDG ++R K L + GD Sbjct: 327 EGTTIIKDAAELKVKETNRIDAVANELNKMGADITPTEDGLIIRGKTPLHAANVTSYGDH 386 Query: 285 K 283 + Sbjct: 387 R 387
>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein| 15) Length = 735 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Frame = -2 Query: 505 GQV*DGHHPAXDGQD-PEAGG----HGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSA 341 G+V D P +G PE G G+ G C P G + P +A Sbjct: 86 GRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAA 145 Query: 340 RPGEAPPCCEDI 305 RP + PP E + Sbjct: 146 RPEQEPPVAEPV 157
>ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog| Length = 3251 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +1 Query: 274 SLLFLVPKCPVCLHNKEELLPDERTVF 354 SL+FL PK P+ L + LPD +T+F Sbjct: 2246 SLVFLGPKSPLDLQVAQSSLPDSKTIF 2272
>PTGIS_BOVIN (Q29626) Prostacyclin synthase (EC 5.3.99.4) (Prostaglandin I2| synthase) Length = 500 Score = 29.3 bits (64), Expect = 7.4 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -3 Query: 390 DGMRWN--SQIVDHEDGPLVREKLLLVVKTYWTLGDEKQ*RRPEIKHEKLRKLTD 232 D + W S++ H + E++ V ++ GDEK +P + H++L+ LTD Sbjct: 84 DAVVWEPRSRLDFHAYAVFLMERIFDVQLPHYNPGDEKSKMKPTLLHKELQALTD 138
>AROA_LISMF (Q71Y92) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 428 Score = 29.3 bits (64), Expect = 7.4 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = -3 Query: 450 EGTVIIRDDVDLLVKIKSVADGM-----RWNSQIVDHEDGPLVREKLLLVVKTYWTLGDE 286 EGT II+D +L VK + D + + + I EDG ++R K L + GD Sbjct: 327 EGTTIIKDAAELKVKETNRIDAVATELNKMGADITPTEDGLIIRGKTPLHAANVTSYGDH 386 Query: 285 K 283 + Sbjct: 387 R 387
>ADEC_DEHSC (Q3ZXH1) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)| Length = 571 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Frame = -2 Query: 505 GQV*DGHHPAXDGQD----PEAGGHGDHQGRCGPASEDKERRGR 386 G+V DGH P G+D AG H DH+ C +E KE+ R Sbjct: 192 GKVLDGHAPGLSGKDLNAYISAGIHSDHE--CIHLAEAKEKLAR 233
>SYV_RHIME (Q92Q37) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 947 Score = 28.9 bits (63), Expect = 9.6 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = -2 Query: 340 RPGEAPPCCEDILDTWGR------ETIATPRNKA*ETEKIDRYWAD--VTTGLPLTVFAL 185 +PGE ED+LDTW T+ P+ ET ++D+Y+ + TG + F Sbjct: 498 KPGEILTRDEDVLDTWFSSALWPFSTLGWPK----ETPELDKYYQTDVLVTGFDIIFF-- 551 Query: 184 WF*SFILLGHSF 149 W +++G F Sbjct: 552 WVARMMMMGLHF 563
>PDR15_YEAST (Q04182) ATP-dependent permease PDR15| Length = 1529 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -3 Query: 243 KLTDTGQMSQPAFLSLCSPCGFEVLSCWVILFGENS*T*WRHAQVY 106 KL TG +S P+ +CS C + ++ F + WR+ ++ Sbjct: 1451 KLAGTGYLSDPSATDICSFCAVSTTNAFLATFSSHYYRRWRNYGIF 1496
>POLN_LORDV (P54634) Non-structural polyprotein [Contains: p48; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymerase (EC 2.7.7.48)] Length = 1699 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = +2 Query: 149 KRMTQQDKTSKPQGEHSERKAGCDICP 229 KRM QD SKPQ E +E A D CP Sbjct: 831 KRMNIQDLWSKPQVEDTEDTANKDGCP 857
>S45A1_RAT (Q8K4S3) Proton-associated sugar transporter A (PAST-A) (Solute| carrier family 45 member 1) Length = 751 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +2 Query: 50 NLCLPHLAGWLSFPCQNLSYT 112 NLC+ H GWLSF L YT Sbjct: 528 NLCVNHFLGWLSFEGMLLFYT 548
>S45A1_MOUSE (Q8BIV7) Proton-associated sugar transporter A (PAST-A) (Solute| carrier family 45 member 1) (Deleted in neuroblastoma 5 protein homolog) (DNb-5 homolog) Length = 751 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +2 Query: 50 NLCLPHLAGWLSFPCQNLSYT 112 NLC+ H GWLSF L YT Sbjct: 528 NLCVNHFLGWLSFEGMLLFYT 548
>ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)| Length = 348 Score = 28.9 bits (63), Expect = 9.6 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Frame = -2 Query: 481 PAXDGQDPEAGGHGDHQ----GRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPPCC 314 P DG+ GG GD GR GP G E P +GP R A PG++ P Sbjct: 240 PGSDGKPGSPGGKGDDGERPLGRPGPRGPP----GEAGPEGP-QGPTGRDAYPGQSGPQG 294 Query: 313 EDILDTWG 290 E L +G Sbjct: 295 EPGLQGYG 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,671,700 Number of Sequences: 219361 Number of extensions: 1869116 Number of successful extensions: 5404 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5393 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
