ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62n21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 567 e-159
2gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 448 e-123
3gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 444 e-122
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 424 e-116
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 422 e-115
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 303 2e-79
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 176 3e-41
8dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
9dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 4e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 4e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 4e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 1e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 1e-18
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
26gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 2e-08
27gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 2e-08
28gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 2e-08
29gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 2e-08
30gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 50 0.004
31emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.27
32gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.1
33gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.1
34dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
35gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.1
36gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
37emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.1
38gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.1
39gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 4.3
40gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 4.3
41gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 40 4.3
42gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 4.3
43gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 4.3
44gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 4.3
45gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 4.3
46gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 4.3
47gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 4.3
48dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 4.3
49gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 4.3
50emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 4.3
51ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 4.3
52gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 4.3
53gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 4.3
54gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 4.3 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  567 bits (286), Expect = e-159
 Identities = 324/330 (98%), Gaps = 5/330 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 59
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 60   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 118
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                        
Query: 119  gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 177
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523

                                                                        
Query: 178  gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctccta 236
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463

                                                                        
Query: 237  tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 295
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403

                                          
Query: 296  tcatcgcatcctggttagcatcacccagag 325
            ||||||||||||||||||||||||||||||
Sbjct: 1402 tcatcgcatcctggttagcatcacccagag 1373
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  448 bits (226), Expect = e-123
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7752 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 7693

                                                                        
Query: 61   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7692 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 7633

                                                                        
Query: 121  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7632 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 7573

                                                              
Query: 181  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7572 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score =  198 bits (100), Expect = 8e-48
 Identities = 100/100 (100%)
 Strand = Plus / Minus

                                                                        
Query: 226  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                    
Query: 286  gaaccagtcttcatcgcatcctggttagcatcacccagag 325
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagag 7256
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  444 bits (224), Expect = e-122
 Identities = 227/228 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 61   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 121  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                            
Query: 181  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 228
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                              
Query: 276  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagag 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagag 1118
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  424 bits (214), Expect = e-116
 Identities = 301/327 (92%), Gaps = 11/327 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 64
           |||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709

                                                                       
Query: 65  gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatgcttaaaag 118
           ||||||| |||||||||     | |||||||||||||||||||  |||||||||||||||
Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650

                                                                       
Query: 119 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
           ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||
Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttggcagtctgg 590

                                                                       
Query: 179 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctcctcctatg 238
           |||||||| ||| |||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 tcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctttacctcctcctatg 530

                                                                       
Query: 239 cagcaagagatggtgggtgtgtatggagaattttctaaccgtagaaggaaccagtcttca 298
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 529 cagcaagagatggtgggtgtgtatggagaatgttctaaccgtagaaggtaccagtcttca 470

                                      
Query: 299 tcgcatcctggttagcatcacccagag 325
           |||||||||||||||||||||||||||
Sbjct: 469 tcgcatcctggttagcatcacccagag 443
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  422 bits (213), Expect = e-115
 Identities = 284/305 (93%), Gaps = 7/305 (2%)
 Strand = Plus / Minus

                                                                        
Query: 27   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 80
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 81   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 140
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 141  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 200
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 201  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 260
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 261  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 320
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                 
Query: 321  cagag 325
            |||||
Sbjct: 1297 cagag 1293
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  303 bits (153), Expect = 2e-79
 Identities = 260/292 (89%), Gaps = 9/292 (3%)
 Strand = Plus / Minus

                                                                        
Query: 41   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 94
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 95   -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 153
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 154  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 213
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 214  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 273
             ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356

                                                                
Query: 274  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagag 325
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagag 1304
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 3e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 100  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 159
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 160  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 219
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 220  tcctttacc 228
            |||||||||
Sbjct: 1369 tcctttacc 1361



 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                              
Query: 276  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagag 325
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagag 1314
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 275  aaccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||||
Sbjct: 1310 aaccgtagaaggaaccagtcttcat 1286
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 275  aaccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||||
Sbjct: 1348 aaccgtagaaggaaccagtcttcat 1324
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 275  aaccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||||
Sbjct: 1347 aaccgtagaaggaaccagtcttcat 1323
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 275  aaccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||||
Sbjct: 1131 aaccgtagaaggaaccagtcttcat 1107
to top
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  135 bits (68), Expect = 1e-28
 Identities = 71/72 (98%)
 Strand = Plus / Minus

                                                                       
Query: 254 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 313
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                       
Query: 314 catcacccagag 325
           ||||||||||||
Sbjct: 248 catcacccagag 237
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 275  aaccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||||
Sbjct: 1352 aaccgtagaaggaaccagtcttcat 1328
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 109    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 169    ggcattttggtcggtgcaaccttccggcacgggca 203
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 272    tctaaccgtagaaggaaccagtcttcat 299
              ||||||||||||||||||||||||||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcat 108333



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 127    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 186
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 187    accttccggcacggg 201
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 109   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 169   ggcattttggtcggtgcaaccttccggcacgggca 203
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 272   tctaaccgtagaaggaaccagtcttcat 299
             ||||||||||||||||||||||||||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcat 30210



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 127   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 186
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 187   accttccggcacggg 201
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 169  ggcattttggtcggtgcaaccttccggcacgggca 203
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 275  aaccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||||
Sbjct: 1316 aaccgtagaaggaaccagtcttcat 1292
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 169  ggcattttggtcggtgcaaccttccggcacgggca 203
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 277  ccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||
Sbjct: 1309 ccgtagaaggaaccagtcttcat 1287
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 109      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 169      ggcattttggtcggtgcaaccttccggcacgggca 203
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                            
Query: 272      tctaaccgtagaaggaaccagtcttcat 299
                ||||||||||||||||||||||||||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcat 28303472



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 127      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 186
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 187      accttccggcacggg 201
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 109      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 169      ggcattttggtcggtgcaaccttccggcacgggca 203
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                            
Query: 272      tctaaccgtagaaggaaccagtcttcat 299
                ||||||||||||||||||||||||||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcat 28285921



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 127      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 186
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 187      accttccggcacggg 201
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 169  ggcattttggtcggtgcaaccttccggcacgggca 203
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 277  ccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||
Sbjct: 1344 ccgtagaaggaaccagtcttcat 1322
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 1e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 115 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 174
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 175 ttggtcggtgcaaccttccggcacgggca 203
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 6e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 169  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 225
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 226  acctcctcct 235
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 275  aaccgtagaaggaaccagtcttcat 299
            |||||||||||||||||||||||||
Sbjct: 1359 aaccgtagaaggaaccagtcttcat 1335
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 1e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 109 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 169 ggcattttggtcggtgcaaccttccggcacgggca 203
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 109     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 169     ggcattttggtcggtgcaaccttccggcacgggca 203
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 109   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 168
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 169   ggcattttggtcggtgcaaccttccggcacgggca 203
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 179  tcggtgcaaccttc 192
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 179  tcggtgcaaccttc 192
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 179  tcggtgcaaccttc 192
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 119  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 178
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 179  tcggtgcaaccttc 192
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
to top
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 275 aaccgtagaaggaaccagtcttcat 299
           |||||||||||||||||||||||||
Sbjct: 565 aaccgtagaaggaaccagtcttcat 541
to top
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 14    aatatatttagagatatattaa 35
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
to top
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    tatatttagagatatattaac 36
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
to top
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tatatttagagatatattaac 36
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      aaacatcagatattaaaagtg 105
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
to top
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   atgcagcaagagatggtgggt 256
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      aaacatcagatattaaaagtg 105
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 85     aaacatcagatattaaaagtg 105
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 16   tatatttagagatatattaac 36
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
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>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  cctttacctcctcctatgca 240
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
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>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 301  gcatcctggttagcatcacc 320
            ||||||||||||||||||||
Sbjct: 1355 gcatcctggttagcatcacc 1336
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tcagatattaaaagtggcat 109
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tcagatattaaaagtggcat 109
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    tcagatattaaaagtggcat 109
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    aatatatttagagatatatt 33
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 118  ggtgtaaaggcagctgccgtcgtcgctc 145
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    aaacatgcccagcaatcgcttgga 61
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tggcatgcttaaaaggtgta 123
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 210 cttgctgtgctcctttacctcctc 233
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    aatatatttagagatatatt 33
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     atcagatattaaaagtggcatgct 112
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,667,232
Number of Sequences: 3902068
Number of extensions: 2667232
Number of successful extensions: 55388
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55168
Number of HSP's gapped (non-prelim): 188
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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