Clone Name
rbah62n20
Clone Library Name
barley_pub
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
chloroplast precursor (RuBisCO activase A) (RA A)
Length = 464
Score = 140 bits (353), Expect(2) = 7e-53
Identities = 69/69 (100%), Positives = 69/69 (100%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD
Sbjct: 359 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 418
Query: 331 AMKTGSFYG 305
AMKTGSFYG
Sbjct: 419 AMKTGSFYG 427
Score = 86.3 bits (212), Expect(2) = 7e-53
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = -3
Query: 257 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 144
GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
chloroplast precursor (RuBisCO activase 1) (RA 1)
(RubisCO activase alpha form)
Length = 476
Score = 112 bits (281), Expect(2) = 1e-38
Identities = 53/69 (76%), Positives = 63/69 (91%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IGK+LVNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN D
Sbjct: 369 IGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANND 428
Query: 331 AMKTGSFYG 305
A+K G+FYG
Sbjct: 429 AIKRGTFYG 437
Score = 66.6 bits (161), Expect(2) = 1e-38
Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
Frame = -3
Query: 260 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 144
GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 474
Score = 111 bits (278), Expect(2) = 1e-38
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IGKRLVNSR+GP FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN D
Sbjct: 369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANAD 428
Query: 331 AMKTGSFYG 305
A+ G+FYG
Sbjct: 429 AIGRGTFYG 437
Score = 67.8 bits (164), Expect(2) = 1e-38
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = -3
Query: 257 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 144
GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 472
Score = 110 bits (274), Expect(2) = 4e-37
Identities = 50/69 (72%), Positives = 63/69 (91%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
+GK+LVNS+DGP FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+D
Sbjct: 367 VGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKD 426
Query: 331 AMKTGSFYG 305
A+ G+F+G
Sbjct: 427 AIDRGTFFG 435
Score = 63.9 bits (154), Expect(2) = 4e-37
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = -3
Query: 257 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 150
GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
chloroplast precursor (RuBisCO activase B) (RA B)
Length = 425
Score = 120 bits (301), Expect = 2e-27
Identities = 56/69 (81%), Positives = 64/69 (92%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
I KRLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN D
Sbjct: 356 ISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDD 415
Query: 331 AMKTGSFYG 305
AMKTG+FYG
Sbjct: 416 AMKTGAFYG 424
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 437
Score = 120 bits (300), Expect = 3e-27
Identities = 56/69 (81%), Positives = 65/69 (94%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IGK+LVNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN D
Sbjct: 369 IGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSD 428
Query: 331 AMKTGSFYG 305
AM TG+FYG
Sbjct: 429 AMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 432
Score = 119 bits (299), Expect = 4e-27
Identities = 56/69 (81%), Positives = 65/69 (94%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IGKRLVNSR+GP FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN D
Sbjct: 359 IGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSD 418
Query: 331 AMKTGSFYG 305
AMKTGSFYG
Sbjct: 419 AMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 433
Score = 112 bits (281), Expect = 4e-25
Identities = 51/68 (75%), Positives = 64/68 (94%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
I ++LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+D
Sbjct: 365 IARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANED 424
Query: 331 AMKTGSFY 308
AMKTGSF+
Sbjct: 425 AMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
chloroplast precursor (RuBisCO activase 2) (RA 2)
(RubisCO activase beta form)
Length = 435
Score = 112 bits (281), Expect = 4e-25
Identities = 52/67 (77%), Positives = 64/67 (95%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IGK+LVNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQD
Sbjct: 369 IGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQD 428
Query: 331 AMKTGSF 311
A+K G+F
Sbjct: 429 AIKRGTF 435
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
chloroplast precursor (RuBisCO activase 2) (RA 2)
Length = 439
Score = 108 bits (271), Expect = 6e-24
Identities = 52/67 (77%), Positives = 61/67 (91%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IG +L+NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN D
Sbjct: 373 IGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANAD 432
Query: 331 AMKTGSF 311
A+ TG+F
Sbjct: 433 AINTGNF 439
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 459
Score = 108 bits (271), Expect = 6e-24
Identities = 51/65 (78%), Positives = 61/65 (93%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IG++L+NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN D
Sbjct: 368 IGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANAD 427
Query: 331 AMKTG 317
A+ TG
Sbjct: 428 AINTG 432
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
chloroplast precursor (RuBisCO activase 1) (RA 1)
Length = 442
Score = 108 bits (269), Expect = 1e-23
Identities = 51/68 (75%), Positives = 60/68 (88%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
IG +L+NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN D
Sbjct: 373 IGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANAD 432
Query: 331 AMKTGSFY 308
A+ GSF+
Sbjct: 433 AINNGSFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 439
Score = 106 bits (265), Expect = 3e-23
Identities = 47/67 (70%), Positives = 65/67 (97%)
Frame = -1
Query: 508 GKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDA 329
GK+LVNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA
Sbjct: 372 GKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDA 431
Query: 328 MKTGSFY 308
+K+GSF+
Sbjct: 432 IKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 441
Score = 104 bits (259), Expect = 2e-22
Identities = 47/68 (69%), Positives = 63/68 (92%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
+GK+LVNS++GP TF+QPKMT++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+D
Sbjct: 373 VGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANED 432
Query: 331 AMKTGSFY 308
A+K+GSF+
Sbjct: 433 AIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 413
Score = 71.2 bits (173), Expect = 1e-12
Identities = 32/44 (72%), Positives = 40/44 (90%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 380
IG+ LVNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 366 IGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast precursor (RuBisCO activase) (RA)
Length = 408
Score = 52.0 bits (123), Expect = 9e-07
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 350
IG++LVN+R V + M + L++YG LV EQ+NVKRVQLAD Y+S A L
Sbjct: 342 IGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
(RuBisCO activase) (RA)
Length = 415
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = -1
Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 368
+ R+VNS +GP F++P T+ L+E + +V EQ ++ QL D Y
Sbjct: 242 VSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
(EF-1AO) (42S p48)
Length = 461
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Frame = -1
Query: 475 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 320
VTF +T E K +E H +QE NVK + + D A N M+
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337
Query: 319 GSFYG*KILHTHPPSLAA 266
GSF I+ HP ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
chloroplast (RuBisCO activase) (RA) (Fragments)
Length = 32
Score = 30.8 bits (68), Expect = 2.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -1
Query: 487 RDGPVTFEQPKMTVEK 440
R+GP TFEQP MT+EK
Sbjct: 17 REGPPTFEQPAMTIEK 32
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
Length = 1346
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 372 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 476
+ +SC+R TL T CP SS +TVI+ C ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
Length = 464
Score = 30.0 bits (66), Expect = 3.8
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Frame = -1
Query: 475 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 320
VTF +T E K +E H +QE NVK + + D A N A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337
Query: 319 GSFYG*KILHTHPPSLAA 266
F I+ HP ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355
>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
Length = 462
Score = 29.3 bits (64), Expect = 6.5
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Frame = -1
Query: 475 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 320
VTF +T E K +E H + E NVK V + D A N M+
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337
Query: 319 GSFYG*KILHTHPPSLAA 266
GSF I+ HP + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355
>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
(EF-1AO1)
Length = 461
Score = 28.9 bits (63), Expect = 8.5
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Frame = -1
Query: 475 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 320
VTF +T E K +E H + E NVK + + D A N M+
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337
Query: 319 GSFYG*KILHTHPPSLAA 266
GSF I+ HP ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
XE12/XE47)
Length = 658
Score = 28.9 bits (63), Expect = 8.5
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -3
Query: 317 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 159
F L + N PT S GGG G ++ T P G D N +D DG+
Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,331,301
Number of Sequences: 219361
Number of extensions: 1487967
Number of successful extensions: 3982
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3981
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)