>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  140 bits (353), Expect(2) = 7e-53
 Identities = 69/69 (100%), Positives = 69/69 (100%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD
Sbjct: 359 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 418

Query: 331 AMKTGSFYG 305
           AMKTGSFYG
Sbjct: 419 AMKTGSFYG 427



 Score = 86.3 bits (212), Expect(2) = 7e-53
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -3

Query: 257 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 144
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  112 bits (281), Expect(2) = 1e-38
 Identities = 53/69 (76%), Positives = 63/69 (91%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IGK+LVNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN D
Sbjct: 369 IGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANND 428

Query: 331 AMKTGSFYG 305
           A+K G+FYG
Sbjct: 429 AIKRGTFYG 437



 Score = 66.6 bits (161), Expect(2) = 1e-38
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -3

Query: 260 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 144
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  111 bits (278), Expect(2) = 1e-38
 Identities = 53/69 (76%), Positives = 62/69 (89%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IGKRLVNSR+GP  FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN D
Sbjct: 369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANAD 428

Query: 331 AMKTGSFYG 305
           A+  G+FYG
Sbjct: 429 AIGRGTFYG 437



 Score = 67.8 bits (164), Expect(2) = 1e-38
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 257 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 144
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  110 bits (274), Expect(2) = 4e-37
 Identities = 50/69 (72%), Positives = 63/69 (91%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           +GK+LVNS+DGP  FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+D
Sbjct: 367 VGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKD 426

Query: 331 AMKTGSFYG 305
           A+  G+F+G
Sbjct: 427 AIDRGTFFG 435



 Score = 63.9 bits (154), Expect(2) = 4e-37
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -3

Query: 257 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 150
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  120 bits (301), Expect = 2e-27
 Identities = 56/69 (81%), Positives = 64/69 (92%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           I KRLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN D
Sbjct: 356 ISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDD 415

Query: 331 AMKTGSFYG 305
           AMKTG+FYG
Sbjct: 416 AMKTGAFYG 424

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  120 bits (300), Expect = 3e-27
 Identities = 56/69 (81%), Positives = 65/69 (94%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IGK+LVNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN D
Sbjct: 369 IGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSD 428

Query: 331 AMKTGSFYG 305
           AM TG+FYG
Sbjct: 429 AMNTGTFYG 437

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  119 bits (299), Expect = 4e-27
 Identities = 56/69 (81%), Positives = 65/69 (94%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IGKRLVNSR+GP  FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN D
Sbjct: 359 IGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSD 418

Query: 331 AMKTGSFYG 305
           AMKTGSFYG
Sbjct: 419 AMKTGSFYG 427

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  112 bits (281), Expect = 4e-25
 Identities = 51/68 (75%), Positives = 64/68 (94%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           I ++LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+D
Sbjct: 365 IARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANED 424

Query: 331 AMKTGSFY 308
           AMKTGSF+
Sbjct: 425 AMKTGSFF 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  112 bits (281), Expect = 4e-25
 Identities = 52/67 (77%), Positives = 64/67 (95%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IGK+LVNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQD
Sbjct: 369 IGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQD 428

Query: 331 AMKTGSF 311
           A+K G+F
Sbjct: 429 AIKRGTF 435

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  108 bits (271), Expect = 6e-24
 Identities = 52/67 (77%), Positives = 61/67 (91%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IG +L+NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN D
Sbjct: 373 IGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANAD 432

Query: 331 AMKTGSF 311
           A+ TG+F
Sbjct: 433 AINTGNF 439

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  108 bits (271), Expect = 6e-24
 Identities = 51/65 (78%), Positives = 61/65 (93%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IG++L+NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN D
Sbjct: 368 IGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANAD 427

Query: 331 AMKTG 317
           A+ TG
Sbjct: 428 AINTG 432

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  108 bits (269), Expect = 1e-23
 Identities = 51/68 (75%), Positives = 60/68 (88%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           IG +L+NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN D
Sbjct: 373 IGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANAD 432

Query: 331 AMKTGSFY 308
           A+  GSF+
Sbjct: 433 AINNGSFF 440

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  106 bits (265), Expect = 3e-23
 Identities = 47/67 (70%), Positives = 65/67 (97%)
 Frame = -1

Query: 508 GKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDA 329
           GK+LVNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA
Sbjct: 372 GKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDA 431

Query: 328 MKTGSFY 308
           +K+GSF+
Sbjct: 432 IKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  104 bits (259), Expect = 2e-22
 Identities = 47/68 (69%), Positives = 63/68 (92%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 332
           +GK+LVNS++GP TF+QPKMT++KLL Y  MLVQEQ+NVKRVQLAD Y+++AALG+AN+D
Sbjct: 373 VGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANED 432

Query: 331 AMKTGSFY 308
           A+K+GSF+
Sbjct: 433 AIKSGSFF 440

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 32/44 (72%), Positives = 40/44 (90%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 380
           IG+ LVNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 366 IGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 28/54 (51%), Positives = 37/54 (68%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 350
           IG++LVN+R   V   +  M +  L++YG  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 342 IGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = -1

Query: 511 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 368
           +  R+VNS +GP  F++P  T+  L+E  + +V EQ  ++  QL D Y
Sbjct: 242 VSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = -1

Query: 475 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 320
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 319 GSFYG*KILHTHPPSLAA 266
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 487 RDGPVTFEQPKMTVEK 440
           R+GP TFEQP MT+EK
Sbjct: 17  REGPPTFEQPAMTIEK 32

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 372 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 476
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -1

Query: 475 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 320
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 319 GSFYG*KILHTHPPSLAA 266
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = -1

Query: 475 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 320
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 319 GSFYG*KILHTHPPSLAA 266
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355

>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
           (EF-1AO1)
          Length = 461

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -1

Query: 475 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 320
           VTF    +T E K +E  H  + E         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 319 GSFYG*KILHTHPPSLAA 266
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -3

Query: 317 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 159
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,331,301
Number of Sequences: 219361
Number of extensions: 1487967
Number of successful extensions: 3982
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3981
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)