ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63c18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYF1_CRYNE (Q5KH46) Pre-mRNA-splicing factor SYF1 28 8.9

>SYF1_CRYNE (Q5KH46) Pre-mRNA-splicing factor SYF1|
          Length = 1031

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 42  LKLPTPIVHPQFFPSNCDVVTLSEAIQNP 128
           L +PTPI HP   PS  D+    + + NP
Sbjct: 18  LPIPTPITHPHLIPS-ADLPVEEDLLHNP 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,164,066
Number of Sequences: 219361
Number of extensions: 307465
Number of successful extensions: 773
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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