ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63c18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA... 119 3e-24
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.14
3emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 44 0.14
4emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 42 0.54
5gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete seq... 40 2.1
6gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Can... 40 2.1
7gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, comple... 40 2.1
8gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.4
9gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome... 38 8.4
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.4
11gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, co... 38 8.4
12emb|AJ303349.1|CRU303349 Capsella rubella ORF1, ORF2, ORF3, ORF4... 38 8.4
13gb|DQ307161.1| Glossina morsitans morsitans clone TC2556 peptido... 38 8.4
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.4

>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds
          Length = 1411

 Score =  119 bits (60), Expect = 3e-24
 Identities = 131/150 (87%), Gaps = 4/150 (2%)
 Strand = Plus / Minus

                                                                        
Query: 25   tattacagtggcaacagctaaaa-ttgcctacccctattgtacaccctcagttctttc-c 82
            ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||  |
Sbjct: 1320 tattacagtggcaacagctaaaaattgcctaccc-tattgtacaccctcggttctttttc 1262

                                                                        
Query: 83   atcgaactgcgacgtagtaactctgtcagaagctattcaaaaccctgtnctggcatatct 142
             | ||||||| ||||||||| |||||||||||||| |||||| ||||   ||| ||||||
Sbjct: 1261 gtagaactgcaacgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatct 1203

                                          
Query: 143  tgatgagtacaaaanttacaattccttttc 172
             ||||||| ||||| ||||||||| |||||
Sbjct: 1202 ggatgagtgcaaaagttacaattctttttc 1173



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 34       ggcaacagctaaaattgcctacccctattg 63
                ||||||||||||||||||||  ||||||||
Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302



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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 34     ggcaacagctaaaattgcctacccctattg 63
              ||||||||||||||||||||  ||||||||
Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206



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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 139    atcttgatgagtacaaaanttacaattc 166
              |||||||||||||||||| | |||||||
Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714



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>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence
          Length = 129327

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   tacccctattgtacaccctc 72
            ||||||||||||||||||||
Sbjct: 8056 tacccctattgtacaccctc 8075



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>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155235

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tgtacaccctcagttctttc 81
             ||||||||||||||||||||
Sbjct: 96594 tgtacaccctcagttctttc 96613



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>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence
          Length = 166104

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aacaatgtagtatgtatgta 20
             ||||||||||||||||||||
Sbjct: 33469 aacaatgtagtatgtatgta 33488



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>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0077O14,
              complete sequence
          Length = 124915

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     gtatgtatgtactcctatt 28
              |||||||||||||||||||
Sbjct: 102503 gtatgtatgtactcctatt 102521



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>gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome 5, complete sequence
          Length = 176338

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     aacagctaaaattgcctac 55
              |||||||||||||||||||
Sbjct: 103154 aacagctaaaattgcctac 103136



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 10       gtatgtatgtactcctatt 28
                |||||||||||||||||||
Sbjct: 10613329 gtatgtatgtactcctatt 10613311



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>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence
          Length = 166669

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 108   tcagaagctattcaaaaccctgt 130
             ||||||||||||||||| |||||
Sbjct: 99157 tcagaagctattcaaaagcctgt 99179



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>emb|AJ303349.1|CRU303349 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial)
          Length = 27056

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 4    aatgtagtatgtatgtact 22
            |||||||||||||||||||
Sbjct: 5818 aatgtagtatgtatgtact 5800



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>gb|DQ307161.1| Glossina morsitans morsitans clone TC2556 peptidoglycan recognition
           protein LC mRNA, complete cds
          Length = 1400

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 32  gtggcaacagctaaaattg 50
           |||||||||||||||||||
Sbjct: 451 gtggcaacagctaaaattg 469



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 10       gtatgtatgtactcctatt 28
                |||||||||||||||||||
Sbjct: 10684873 gtatgtatgtactcctatt 10684855


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,356,008
Number of Sequences: 3902068
Number of extensions: 1356008
Number of successful extensions: 73948
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73813
Number of HSP's gapped (non-prelim): 132
length of query: 172
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 150
effective length of database: 17,147,199,772
effective search space: 2572079965800
effective search space used: 2572079965800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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