Clone Name | rbah63c18 |
---|---|
Clone Library Name | barley_pub |
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds Length = 1411 Score = 119 bits (60), Expect = 3e-24 Identities = 131/150 (87%), Gaps = 4/150 (2%) Strand = Plus / Minus Query: 25 tattacagtggcaacagctaaaa-ttgcctacccctattgtacaccctcagttctttc-c 82 ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| | Sbjct: 1320 tattacagtggcaacagctaaaaattgcctaccc-tattgtacaccctcggttctttttc 1262 Query: 83 atcgaactgcgacgtagtaactctgtcagaagctattcaaaaccctgtnctggcatatct 142 | ||||||| ||||||||| |||||||||||||| |||||| |||| ||| |||||| Sbjct: 1261 gtagaactgcaacgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatct 1203 Query: 143 tgatgagtacaaaanttacaattccttttc 172 ||||||| ||||| ||||||||| ||||| Sbjct: 1202 ggatgagtgcaaaagttacaattctttttc 1173
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.14 Identities = 28/30 (93%) Strand = Plus / Minus Query: 34 ggcaacagctaaaattgcctacccctattg 63 |||||||||||||||||||| |||||||| Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 44.1 bits (22), Expect = 0.14 Identities = 28/30 (93%) Strand = Plus / Minus Query: 34 ggcaacagctaaaattgcctacccctattg 63 |||||||||||||||||||| |||||||| Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 3/6 Length = 317511 Score = 42.1 bits (21), Expect = 0.54 Identities = 26/28 (92%) Strand = Plus / Plus Query: 139 atcttgatgagtacaaaanttacaattc 166 |||||||||||||||||| | ||||||| Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714
>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence Length = 129327 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tacccctattgtacaccctc 72 |||||||||||||||||||| Sbjct: 8056 tacccctattgtacaccctc 8075
>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155235 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tgtacaccctcagttctttc 81 |||||||||||||||||||| Sbjct: 96594 tgtacaccctcagttctttc 96613
>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence Length = 166104 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aacaatgtagtatgtatgta 20 |||||||||||||||||||| Sbjct: 33469 aacaatgtagtatgtatgta 33488
>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0077O14, complete sequence Length = 124915 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gtatgtatgtactcctatt 28 ||||||||||||||||||| Sbjct: 102503 gtatgtatgtactcctatt 102521
>gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome 5, complete sequence Length = 176338 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 aacagctaaaattgcctac 55 ||||||||||||||||||| Sbjct: 103154 aacagctaaaattgcctac 103136
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gtatgtatgtactcctatt 28 ||||||||||||||||||| Sbjct: 10613329 gtatgtatgtactcctatt 10613311
>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence Length = 166669 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 108 tcagaagctattcaaaaccctgt 130 ||||||||||||||||| ||||| Sbjct: 99157 tcagaagctattcaaaagcctgt 99179
>emb|AJ303349.1|CRU303349 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial) Length = 27056 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 aatgtagtatgtatgtact 22 ||||||||||||||||||| Sbjct: 5818 aatgtagtatgtatgtact 5800
>gb|DQ307161.1| Glossina morsitans morsitans clone TC2556 peptidoglycan recognition protein LC mRNA, complete cds Length = 1400 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 gtggcaacagctaaaattg 50 ||||||||||||||||||| Sbjct: 451 gtggcaacagctaaaattg 469
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gtatgtatgtactcctatt 28 ||||||||||||||||||| Sbjct: 10684873 gtatgtatgtactcctatt 10684855 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,356,008 Number of Sequences: 3902068 Number of extensions: 1356008 Number of successful extensions: 73948 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73813 Number of HSP's gapped (non-prelim): 132 length of query: 172 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 150 effective length of database: 17,147,199,772 effective search space: 2572079965800 effective search space used: 2572079965800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)