ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABA2_NICPL (Q40412) Zeaxanthin epoxidase, chloroplast precursor ... 120 3e-27
2ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor ... 112 8e-25
3ABA2_PRUAR (O81360) Zeaxanthin epoxidase, chloroplast precursor ... 111 2e-24
4ABA2_CAPAN (Q96375) Zeaxanthin epoxidase, chloroplast precursor ... 99 1e-20
5NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter ... 39 0.011
6FRAH_ANASP (P46017) Protein fraH 37 0.042
7DMA1_SCHPO (Q10322) Protein dma1 32 2.3
8PRPE_SALTY (P55912) Propionate--CoA ligase (EC 6.2.1.17) (Propio... 30 6.7
9RAD17_MOUSE (Q6NXW6) Cell cycle checkpoint protein RAD17 30 8.8

>ABA2_NICPL (Q40412) Zeaxanthin epoxidase, chloroplast precursor (EC|
           1.14.13.90)
          Length = 663

 Score =  120 bits (302), Expect = 3e-27
 Identities = 63/127 (49%), Positives = 78/127 (61%)
 Frame = -3

Query: 668 SSGDDSALQPIRLIRDEQRTLSIGXXXXXXXXXXXXXXXXPQVSEIHATITCKNKGFYLT 489
           +   ++AL+ + L RDE    +IG                PQVSE+HA I+ K   F++T
Sbjct: 537 AGNSNAALETLVLSRDENMPCNIGSVSHANIPGKSVVIPLPQVSEMHARISYKGGAFFVT 596

Query: 488 DLGSEHGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKKAMFRVKVLSALPYDSARGG 309
           DL SEHGTW  DNEGRRYR  PNFP RFHPSD IEFGSDKKA FRVKV+   P  +A+  
Sbjct: 597 DLRSEHGTWITDNEGRRYRASPNFPTRFHPSDIIEFGSDKKAAFRVKVMKFPPKTAAKEE 656

Query: 308 GEVLQAA 288
            + + AA
Sbjct: 657 RQAVGAA 663



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>ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor (EC|
           1.14.13.90)
          Length = 669

 Score =  112 bits (281), Expect = 8e-25
 Identities = 60/111 (54%), Positives = 70/111 (63%)
 Frame = -3

Query: 674 PMSSGDDSALQPIRLIRDEQRTLSIGXXXXXXXXXXXXXXXXPQVSEIHATITCKNKGFY 495
           P  +G  S L+ I L RDE    ++G                PQVSE+HA I+CK+  F+
Sbjct: 542 PAGNGS-SGLEAIVLSRDEDVPCTVGSISHTNIPGKSIVLPLPQVSEMHARISCKDGAFF 600

Query: 494 LTDLGSEHGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKKAMFRVKVL 342
           +TDL SEHGTW  DNEGRRYR  PNFP RFHPSD IEFGSD KA FRVK +
Sbjct: 601 VTDLRSEHGTWVTDNEGRRYRTSPNFPTRFHPSDVIEFGSD-KAAFRVKAM 650



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>ABA2_PRUAR (O81360) Zeaxanthin epoxidase, chloroplast precursor (EC|
           1.14.13.90) (PA-ZE)
          Length = 661

 Score =  111 bits (277), Expect = 2e-24
 Identities = 65/124 (52%), Positives = 76/124 (61%)
 Frame = -3

Query: 659 DDSALQPIRLIRDEQRTLSIGXXXXXXXXXXXXXXXXPQVSEIHATITCKNKGFYLTDLG 480
           D+ A Q I L RDE+    IG                PQVSE+HA I+ K+  FYLTDL 
Sbjct: 541 DNDASQLICLNRDEKNPCIIGSAPHGDVSGISIAIPKPQVSEMHARISYKDGAFYLTDLR 600

Query: 479 SEHGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKKAMFRVKVLSALPYDSARGGGEV 300
           SEHGTW  D EG+RYR+PPNFP RF PSDAIE GS K A FRVKV+ + P    + G  +
Sbjct: 601 SEHGTWIADIEGKRYRVPPNFPARFRPSDAIEIGSQKVA-FRVKVMKSSPGSVEKEG--I 657

Query: 299 LQAA 288
           LQAA
Sbjct: 658 LQAA 661



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>ABA2_CAPAN (Q96375) Zeaxanthin epoxidase, chloroplast precursor (EC|
           1.14.13.90) (Xanthophyll epoxidase) (Beta-cyclohexenyl
           epoxidase)
          Length = 660

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 53/127 (41%), Positives = 71/127 (55%)
 Frame = -3

Query: 668 SSGDDSALQPIRLIRDEQRTLSIGXXXXXXXXXXXXXXXXPQVSEIHATITCKNKGFYLT 489
           +   ++AL+ + L RDE    +IG                 QVS++HA I+     F  T
Sbjct: 535 AGNSNAALETLVLSRDENMPCTIGSVSHANIPGKSVVIPLSQVSDMHARISYNGGAFLGT 594

Query: 488 DLGSEHGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKKAMFRVKVLSALPYDSARGG 309
              S+HGTWF DNEGRRYR+ PNFP+RFH SD I FGSD KA FR+K +   P  +A+  
Sbjct: 595 AFRSDHGTWFIDNEGRRYRVSPNFPMRFHSSDVIVFGSD-KAAFRIKAMKFAPKTAAKED 653

Query: 308 GEVLQAA 288
            + + AA
Sbjct: 654 RQAVGAA 660



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>NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter protein)|
           (Solute carrier family 4 anion exchanger member 1
           adapter protein) (Lung cancer oncogene 3 protein)
          Length = 796

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -3

Query: 503 GFYLTDLGSEHGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKK 366
           GFYL DLGS HGT+ N     + R+PP    R H    + FG   +
Sbjct: 230 GFYLYDLGSTHGTFLN-----KTRIPPRTYCRVHVGHVVRFGGSTR 270



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>FRAH_ANASP (P46017) Protein fraH|
          Length = 289

 Score = 37.4 bits (85), Expect = 0.042
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -3

Query: 542 VSEIHATITCKNKGFYLTDLGSEHGTWFND---NEGRRYRLPPNFPVRFHPSDAIEF 381
           VS +HA I  +    Y+ D+GS +GT+ N+     G R+RL P   +     D + F
Sbjct: 228 VSRVHADIRLEGDAHYIEDVGSSNGTYINNLPLLPGNRHRLRPGDRISLGKGDLVTF 284



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>DMA1_SCHPO (Q10322) Protein dma1|
          Length = 267

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -3

Query: 542 VSEIHATITCKNKGFYLTDLGSEHGTWFNDNEGRRYRLPP----NFPVRFHPSDAIEFGS 375
           VS  HA I  +N  +Y+ D+GS  GT+ N       RL P    + P     +D ++ G+
Sbjct: 84  VSRRHAQIFYENNTWYIQDMGSSSGTFLN-----HVRLSPPSKTSKPYPISNNDILQLGA 138

Query: 374 D 372
           D
Sbjct: 139 D 139



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>PRPE_SALTY (P55912) Propionate--CoA ligase (EC 6.2.1.17) (Propionyl-CoA|
           synthetase)
          Length = 628

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 260 DKGWLKSPLMLPAELLPRLSPSRMGAR*APSPGTWPSCLNQTRWHPKGENEPGSLEVTG 436
           + GW   P+M  A  L    PSR+G+   P  G     LN+    P G NE G L + G
Sbjct: 390 ESGW---PIMALARALDD-RPSRLGSPGVPMYGYNVQLLNEVTGEPCGINEKGMLVIEG 444



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>RAD17_MOUSE (Q6NXW6) Cell cycle checkpoint protein RAD17|
          Length = 688

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 281 GTSATPCHQPLYSILQ*KNSRHCITAKKRNCNFC 180
           G+S  P H+P + ++Q K   +C+ AK    +FC
Sbjct: 516 GSSFRPLHKPQWFLIQKKYRENCLAAKALFVDFC 549


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,431,862
Number of Sequences: 219361
Number of extensions: 2113261
Number of successful extensions: 5028
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5027
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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