ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63c17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA... 813 0.0
2ref|XM_462664.1| Oryza sativa (japonica cultivar-group), predic... 170 4e-39
3gb|AY104294.1| Zea mays PCO116917 mRNA sequence 168 2e-38
4dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mR... 165 2e-37
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 7e-10
6emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 74 7e-10
7emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 48 0.038
8gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP... 46 0.15
9ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.15
10ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.15
11emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in... 46 0.15
12gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.15
13gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.15
14gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.15
15gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.15
16gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.15
17dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds 46 0.15
18gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, com... 44 0.59
19gb|AY273166.1| Homo sapiens polymerase (DNA directed), epsilon (... 44 0.59
20gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Can... 44 0.59
21gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.59
22gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.59
23dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.59
24emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chr... 44 0.59
25gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, comple... 44 0.59
26dbj|AK081831.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 2.3
27gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 42 2.3
28emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on ch... 42 2.3
29gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,... 42 2.3
30gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,... 42 2.3
31ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 2.3
32gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, comple... 42 2.3
33gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, comple... 42 2.3
34emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chr... 42 2.3
35gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 9.3
36gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 9.3
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.3
38gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete seq... 40 9.3
39gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 9.3
40emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chro... 40 9.3
41emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 9.3
42gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Can... 40 9.3
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
44gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, co... 40 9.3
45gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 9.3
46dbj|AP002840.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.3
47emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chr... 40 9.3 
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds
          Length = 1411

 Score =  813 bits (410), Expect = 0.0
 Identities = 616/676 (91%), Gaps = 11/676 (1%)
 Strand = Plus / Minus

                                                                        
Query: 7    tatgaacacgtgttaataggcacaacaatgtagtatg-tatgtactcctattacagtggc 65
            |||||||||||||||||||||||||||||||| | |  || ||||   ||||||||||||
Sbjct: 1367 tatgaacacgtgttaataggcacaacaatgtactgtactaggtacaa-tattacagtggc 1309

                                                                        
Query: 66   aacagctaaaa-ttgcctacccctattgtacaccctcagttctttc-catcgaactgcga 123
            ||||||||||| |||||||||| |||||||||||||| |||||||  | | ||||||| |
Sbjct: 1308 aacagctaaaaattgcctaccc-tattgtacaccctcggttctttttcgtagaactgcaa 1250

                                                                        
Query: 124  cgtagtaactctgtcagaagctattcaaaaccctgttctggcatatcttgatgagtacaa 183
            |||||||| |||||||||||||| |||||| |||| | ||| |||||| ||||||| |||
Sbjct: 1249 cgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatctggatgagtgcaa 1191

                                                                        
Query: 184  aaattacaattccttttcttggcggtgatgcagtgtcggctgnnnnnnnactgaagaatg 243
            || ||||||||| |||||||  |  |||||||||||||||||       |||||||||||
Sbjct: 1190 aagttacaattctttttctttcca-tgatgcagtgtcggctgttt----actgaagaatg 1136

                                                                        
Query: 244  ctgtacagtggctggtgacaaggggtggctgaagtccccactcatgctgcctgcagaact 303
            |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 1135 ctgtacagtggctggtgacaaggggtcgttgaagtccccactcatgctgcctgcagaact 1076

                                                                        
Query: 304  tctcccccgcctctcgccgagtcgtatgggagcgcgctgagcaccttcacccggaacatg 363
            |||||||| |||||||| |||||||| || |||| ||| |||||||||||||||||||||
Sbjct: 1075 tctccccctcctctcgcggagtcgtacggaagcgtgctcagcaccttcacccggaacatg 1016

                                                                        
Query: 364  gccttcttgtctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagttt 423
            |||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct: 1015 gccttcttgtctgagccaaattcgatggcatcggaagggtggaaacgaactgggaagttt 956

                                                                        
Query: 424  ggaggtaaccggtagcgcctaccttcgttgtcattaaaccatgtaccgtgctcgcttccg 483
            ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| 
Sbjct: 955  ggaggtaaccggtagcgtctgccttcgttgtcgttaaaccatgtaccgtgctcgcttccc 896

                                                                        
Query: 484  agatcggtcaaatagaaacccttgttcttgcatgtgatagtagcatggatctctgatact 543
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 895  agatcggtcaaatagaaacccttattcttgcatgtgatagtagcatggatctctgatact 836

                                                                        
Query: 544  tgtggcaagggcaacgacaacgaagaatcagaattgctcggatctggtttgcttccaata 603
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  tgtggcaaggggaacgacaacgaagaatcagaattgctcggatctggtttgcttccaata 776

                                                                        
Query: 604  gagagtgtcctctgctcatccctgatcaaacgaatgggctgcaaggcggagtcatctcca 663
            |||||||||||||| |||||||||||||||||||||||||||||||| |||||  |||||
Sbjct: 775  gagagtgtcctctgttcatccctgatcaaacgaatgggctgcaaggcagagtcgcctcca 716

                            
Query: 664  gagctcatagggaaga 679
            ||||||||||||||||
Sbjct: 715  gagctcatagggaaga 700
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>ref|XM_462664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1959

 Score =  170 bits (86), Expect = 4e-39
 Identities = 194/230 (84%)
 Strand = Plus / Minus

                                                                        
Query: 328  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 387
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 1916 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 1857

                                                                        
Query: 388  atggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgcctacct 447
            ||||||||||| || || ||||| || |||||||| |||||||  || ||||| ||||||
Sbjct: 1856 atggcatccgagggatggaaacggacagggaagttcggaggtacgcgatagcgtctacct 1797

                                                                        
Query: 448  tcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaacccttg 507
            ||||||||  ||| ||||||||| || || |||||   ||| |||| ||| ||  |||| 
Sbjct: 1796 tcgttgtcggtaatccatgtaccatgttcacttccattatcagtcacataaaaggcctta 1737

                                                              
Query: 508  ttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 557
            |||||||||||||||||||||||| | |||||||  ||||||||||||||
Sbjct: 1736 ttcttgcatgtgatagtagcatggttttctgatatctgtggcaagggcaa 1687
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>gb|AY104294.1| Zea mays PCO116917 mRNA sequence
          Length = 1342

 Score =  168 bits (85), Expect = 2e-38
 Identities = 196/233 (84%)
 Strand = Plus / Minus

                                                                       
Query: 325 tcgtatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaac 384
           ||||||||||||| | | |||||||||||||||||||| |||||||| || |||||||||
Sbjct: 914 tcgtatgggagcgtgttcagcaccttcacccggaacatagccttcttatcggaaccaaac 855

                                                                       
Query: 385 tcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgccta 444
           || ||| |||| ||||| || |||||||||||||||||||| || |  ||||| || |||
Sbjct: 854 tcaatgacatcggaaggatggaaacgaaccgggaagtttggtggcacgcggtaacgtcta 795

                                                                       
Query: 445 ccttcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaaccc 504
           ||||| |||||  ||| ||| ||||| || || || |||||||| |||| ||||||| ||
Sbjct: 794 ccttcattgtcggtaatccaggtaccatgttcactcccgagatcagtcagatagaaagcc 735

                                                                
Query: 505 ttgttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 557
           || |||||||| ||||||||||||||  | |||||||  ||||| ||||||||
Sbjct: 734 ttattcttgcacgtgatagtagcatgcctttctgatatctgtggaaagggcaa 682



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 598 ccaatagagagtgtcctctgctcatccctgatcaaacgaatgggctgc 645
           |||| |||||||| ||||||||||||||| || |||||||||||||||
Sbjct: 641 ccaacagagagtgacctctgctcatccctaattaaacgaatgggctgc 594
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>dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin
            epoxidase, complete cds
          Length = 2345

 Score =  165 bits (83), Expect = 2e-37
 Identities = 195/231 (84%), Gaps = 1/231 (0%)
 Strand = Plus / Minus

                                                                        
Query: 328  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 387
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 2109 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 2050

                                                                        
Query: 388  atggcatccgaagggtgaaaacgaaccgggaagtttggaggta-accggtagcgcctacc 446
            ||||||||||| || || ||||| || |||||||| |||||||  ||| ||||| |||||
Sbjct: 2049 atggcatccgagggatggaaacggacagggaagttcggaggtacgccgatagcgtctacc 1990

                                                                        
Query: 447  ttcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaaccctt 506
            |||||||||  ||| ||||||||| || || |||||   ||| |||| ||| ||  ||||
Sbjct: 1989 ttcgttgtcggtaatccatgtaccatgttcacttccattatcagtcacataaaaggcctt 1930

                                                               
Query: 507  gttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 557
             |||||||||||||||||||||||| | |||||||  ||||||||||||||
Sbjct: 1929 attcttgcatgtgatagtagcatggttttctgatatctgtggcaagggcaa 1879
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 373      tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 432
                |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 22350882 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 22350823

                                     
Query: 433      cggtagcgcctaccttcgttg 453
                || ||||| ||||||||||||
Sbjct: 22350822 cgatagcgtctaccttcgttg 22350802



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 503      ccttgttcttgcatgtgatagtagcatggatctctgata 541
                |||| |||||||||||||||||||||||| | |||||||
Sbjct: 22350662 ccttattcttgcatgtgatagtagcatggttttctgata 22350624



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 328      tatgggagcgcgctgagcaccttcacccggaacatggcct 367
                |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 22351048 tatgggagcgtgctcagcaccttcacacggaacacggcct 22351009



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 63       ggcaacagctaaaattgcctacccctattg 92
                ||||||||||||||||||||  ||||||||
Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 373    tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 432
              |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 101786 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 101727

                                   
Query: 433    cggtagcgcctaccttcgttg 453
              || ||||| ||||||||||||
Sbjct: 101726 cgatagcgtctaccttcgttg 101706



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 503    ccttgttcttgcatgtgatagtagcatggatctctgata 541
              |||| |||||||||||||||||||||||| | |||||||
Sbjct: 101566 ccttattcttgcatgtgatagtagcatggttttctgata 101528



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 328    tatgggagcgcgctgagcaccttcacccggaacatggcct 367
              |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 101952 tatgggagcgtgctcagcaccttcacacggaacacggcct 101913



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 63     ggcaacagctaaaattgcctacccctattg 92
              ||||||||||||||||||||  ||||||||
Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 168    atcttgatgagtacaaaaattacaattc 195
              |||||||||||||||||||| |||||||
Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714
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>gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2162

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 1982 gccttcttatctgaaccaaactcgatg 1956
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>ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.1 mRNA,
            complete cds
          Length = 2373

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
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>ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.2 mRNA,
            complete cds
          Length = 2377

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2066 gccttcttatctgaaccaaactcgatg 2040
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>emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in linkage group 5,
             complete sequence
          Length = 122916

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 605   agagtgtcctctgctcatccctg 627
             |||||||||||||||||||||||
Sbjct: 77003 agagtgtcctctgctcatccctg 76981
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>gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2297

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 1996 gccttcttatctgaaccaaactcgatg 1970
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>gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2520

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2209 gccttcttatctgaaccaaactcgatg 2183
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>gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2314

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2002 gccttcttatctgaaccaaactcgatg 1976
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>gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2178

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2121 gccttcttatctgaaccaaactcgatg 2095
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>gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase mRNA, complete cds
          Length = 2323

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2057 gccttcttatctgaaccaaactcgatg 2031
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>dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds
          Length = 2345

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
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>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence
          Length = 162962

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 182    aaaaattacaattccttttctt 203
              ||||||||||||||||||||||
Sbjct: 132787 aaaaattacaattccttttctt 132766
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>gb|AY273166.1| Homo sapiens polymerase (DNA directed), epsilon (POLE1) gene, partial
             cds
          Length = 58992

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 240   aatgctgtacagtggctggtga 261
             ||||||||||||||||||||||
Sbjct: 19805 aatgctgtacagtggctggtga 19784
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>gb|AC131212.6| Homo sapiens 12 BAC RP13-554M15 (Rowsell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160039

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 240    aatgctgtacagtggctggtga 261
              ||||||||||||||||||||||
Sbjct: 146300 aatgctgtacagtggctggtga 146321
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>gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) gene, complete cds
          Length = 3605

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 365  ccttcttgtctgaaccaaactcgatg 390
            ||||||| ||||||||||||||||||
Sbjct: 3238 ccttcttatctgaaccaaactcgatg 3213
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>gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase gene, complete cds
          Length = 4807

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 365  ccttcttgtctgaaccaaactcgatg 390
            ||||||| ||||||||||||||||||
Sbjct: 3745 ccttcttatctgaaccaaactcgatg 3720
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>dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10
          Length = 31132

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 365   ccttcttgtctgaaccaaactcgatg 390
             ||||||| ||||||||||||||||||
Sbjct: 26568 ccttcttatctgaaccaaactcgatg 26593
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>emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chromosome 14, complete
              sequence
          Length = 178159

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 182    aaaaattacaattccttttctt 203
              ||||||||||||||||||||||
Sbjct: 128657 aaaaattacaattccttttctt 128636
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>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence
          Length = 166104

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 28    acaacaatgtagtatgtatgta 49
             ||||||||||||||||||||||
Sbjct: 33467 acaacaatgtagtatgtatgta 33488
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>dbj|AK081831.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130080K17 product:hypothetical protein,
           full insert sequence
          Length = 1228

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 actgaagaatgctgtacagtg 253
           |||||||||||||||||||||
Sbjct: 378 actgaagaatgctgtacagtg 398
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>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 489    ggtcaaatagaaacccttgtt 509
              |||||||||||||||||||||
Sbjct: 125779 ggtcaaatagaaacccttgtt 125799
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>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete
              sequence
          Length = 180092

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    actgaagaatgctgtacagtg 253
              |||||||||||||||||||||
Sbjct: 173729 actgaagaatgctgtacagtg 173709
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>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence
          Length = 173242

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 604    gagagtgtcctctgctcatcc 624
              |||||||||||||||||||||
Sbjct: 142378 gagagtgtcctctgctcatcc 142398
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>gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y, complete sequence
          Length = 149230

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 604   gagagtgtcctctgctcatcc 624
             |||||||||||||||||||||
Sbjct: 22639 gagagtgtcctctgctcatcc 22619
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 604     gagagtgtcctctgctcatcc 624
               |||||||||||||||||||||
Sbjct: 4401156 gagagtgtcctctgctcatcc 4401176



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 604     gagagtgtcctctgctcatcc 624
               |||||||||||||||||||||
Sbjct: 1647684 gagagtgtcctctgctcatcc 1647664
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>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence
          Length = 182101

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 246   gtacagtggctggtgacaagg 266
             |||||||||||||||||||||
Sbjct: 63652 gtacagtggctggtgacaagg 63632
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>gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, complete sequence
          Length = 176044

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 510    cttgcatgtgatagtagcatg 530
              |||||||||||||||||||||
Sbjct: 158657 cttgcatgtgatagtagcatg 158637
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>emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chromosome 2, complete
             sequence
          Length = 219340

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 493   aaatagaaacccttgttcttg 513
             |||||||||||||||||||||
Sbjct: 31326 aaatagaaacccttgttcttg 31346
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 168    atcttgatgagtacaaaaattacaattc 195
              ||||||||||||| |||||| |||||||
Sbjct: 984508 atcttgatgagtataaaaataacaattc 984535
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     tcttgatgagtacaaaaatt 188
               ||||||||||||||||||||
Sbjct: 1314619 tcttgatgagtacaaaaatt 1314638
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 184      aaattacaattccttttctt 203
                ||||||||||||||||||||
Sbjct: 34148352 aaattacaattccttttctt 34148371
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>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence
          Length = 129327

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   tacccctattgtacaccctc 101
            ||||||||||||||||||||
Sbjct: 8056 tacccctattgtacaccctc 8075
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 195     ccttttcttggcggtgatgc 214
               ||||||||||||||||||||
Sbjct: 3710763 ccttttcttggcggtgatgc 3710744
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>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete
             sequence
          Length = 147810

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   ggaacatggccttcttgtct 375
             ||||||||||||||||||||
Sbjct: 17183 ggaacatggccttcttgtct 17164
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     tcttgatgagtacaaaaatt 188
               ||||||||||||||||||||
Sbjct: 1327540 tcttgatgagtacaaaaatt 1327559
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>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155235

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tgtacaccctcagttctttc 110
             ||||||||||||||||||||
Sbjct: 96594 tgtacaccctcagttctttc 96613
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 184      aaattacaattccttttctt 203
                ||||||||||||||||||||
Sbjct: 34238824 aaattacaattccttttctt 34238843
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>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence
          Length = 166669

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 137   tcagaagctattcaaaaccctgtt 160
             ||||||||||||||||| ||||||
Sbjct: 99157 tcagaagctattcaaaagcctgtt 99180
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    aaattacaattccttttctt 203
              ||||||||||||||||||||
Sbjct: 112164 aaattacaattccttttctt 112183
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>dbj|AP002840.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-159N11, complete
             sequence
          Length = 177031

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 609   tgtcctctgctcatccctga 628
             ||||||||||||||||||||
Sbjct: 99900 tgtcctctgctcatccctga 99881
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>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete
             sequence
          Length = 208695

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 175   tgagtacaaaaattacaattcctt 198
             |||||||||||||| |||||||||
Sbjct: 69405 tgagtacaaaaattccaattcctt 69382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,664,353
Number of Sequences: 3902068
Number of extensions: 5664353
Number of successful extensions: 92274
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92001
Number of HSP's gapped (non-prelim): 266
length of query: 679
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 656
effective length of database: 17,143,297,704
effective search space: 11246003293824
effective search space used: 11246003293824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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