ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63c16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1Y2253_MYCBO (P64956) Hypothetical protein Mb2253c 100 7e-21
2Y2228_MYCTU (P64955) Hypothetical protein Rv2228c/MT2287 100 7e-21
3EBSB_ENTFA (P36921) Cell wall enzyme ebsB 62 2e-09
4RNHL_BACSU (P54162) 14.7 kDa ribonuclease H-like protein 54 4e-07
5RNH_RALSO (Q8XZ91) Ribonuclease H (EC 3.1.26.4) (RNase H) 47 5e-05
6RNH_HELPY (P56120) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 44 3e-04
7RNH_SYNY3 (Q55801) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 44 6e-04
8RNH_HELPJ (Q9ZLH3) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 43 7e-04
9RNH_BRAJA (Q89UU3) Ribonuclease H (EC 3.1.26.4) (RNase H) 40 0.005
10RNH_WOLPM (Q73I74) Ribonuclease H (EC 3.1.26.4) (RNase H) 40 0.008
11YPEP_BACSU (P54164) Hypothetical protein ypeP 39 0.018
12RNH_SYNEL (Q8DM24) Ribonuclease H (EC 3.1.26.4) (RNase H) 38 0.024
13RNH_PSESM (Q87YT0) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 38 0.031
14RNH_IDILO (Q5QZL3) Ribonuclease H (EC 3.1.26.4) (RNase H) 38 0.031
15RNH_THETN (Q8RA67) Ribonuclease H (EC 3.1.26.4) (RNase H) 37 0.041
16RNH_BUCAP (Q08885) Ribonuclease H (EC 3.1.26.4) (RNase H) 37 0.053
17RNH_HAEDU (Q7VM15) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 37 0.053
18CSD_METTH (O27442) Probable cysteine desulfurase (EC 2.8.1.7) 37 0.070
19RNH1_BACHD (Q9KEI9) Ribonuclease H (EC 3.1.26.4) (RNase H) 37 0.070
20RNH_STRCO (Q9X7R6) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 36 0.091
21RNH_RICTY (Q68W20) Ribonuclease H (EC 3.1.26.4) (RNase H) 36 0.091
22RNH_HAEIN (P43807) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 35 0.20
23RNH_HAEI8 (Q4QP49) Ribonuclease H (EC 3.1.26.4) (RNase H) 35 0.20
24RNH_SILPO (Q5LNJ2) Ribonuclease H (EC 3.1.26.4) (RNase H) 34 0.35
25RNH_CAUCR (Q9A341) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 34 0.45
26RNH_XANOR (Q5H426) Ribonuclease H (EC 3.1.26.4) (RNase H) 34 0.45
27RNH_XANAC (Q8PNH8) Ribonuclease H (EC 3.1.26.4) (RNase H) 34 0.45
28RNH_PSEAE (Q9I2S9) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 34 0.45
29RNH_NEIG1 (Q5F7K9) Ribonuclease H (EC 3.1.26.4) (RNase H) 33 0.59
30RNH_NEIMB (Q9JYE5) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 33 1.0
31RNH_NEIMA (Q9JTD9) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 33 1.0
32RNH_PHOLU (Q8GF77) Ribonuclease H (EC 3.1.26.4) (RNase H) 33 1.0
33RNH_PHOLL (Q7N807) Ribonuclease H (EC 3.1.26.4) (RNase H) 33 1.0
34RNH_VIBPA (Q87MG2) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 33 1.0
35RNH_RICCN (Q92GL5) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 33 1.0
36RNH_VIBVY (Q7MII6) Ribonuclease H (EC 3.1.26.4) (RNase H) 32 1.3
37RNH_VIBVU (Q8DBD5) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 32 1.3
38RNH_PASMU (P57813) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 32 1.3
39RNH_PSEPK (Q88FF5) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 32 1.7
40RNH_WIGBR (Q8D3D3) Ribonuclease H (EC 3.1.26.4) (RNase H) 32 1.7
41RNH_RICPR (Q9ZCK3) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 32 1.7
42RNH_RICFE (Q4UN27) Ribonuclease H (EC 3.1.26.4) (RNase H) 32 1.7
43RNH_MYCSM (Q07705) Ribonuclease H (EC 3.1.26.4) (RNase H) 32 2.2
44RNH_XANCP (Q8PBX8) Ribonuclease H (EC 3.1.26.4) (RNase H) 31 2.9
45RNH_RHIME (Q92RG0) Ribonuclease H (EC 3.1.26.4) (RNase H) 31 2.9
46RNH_BRUSU (P66674) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 31 2.9
47RNH_BRUME (P66673) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 31 2.9
48RNH_BRUAB (Q57EP4) Ribonuclease H (EC 3.1.26.4) (RNase H) 31 2.9
49RNH_SALTY (P0A2B9) Ribonuclease HI (EC 3.1.26.4) (RNase HI) (Rib... 31 3.8
50RNH_SALTI (P0A2C0) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 31 3.8
51RNH_SALPA (Q5PFD8) Ribonuclease H (EC 3.1.26.4) (RNase H) 31 3.8
52HIS6_CAMJR (Q5HSI8) Imidazole glycerol phosphate synthase subuni... 31 3.8
53HIS61_CAMJE (Q9PM72) Imidazole glycerol phosphate synthase subun... 31 3.8
54RNH_AGRT5 (Q8UHA7) Ribonuclease H (EC 3.1.26.4) (RNase H) 31 3.8
55S15A2_RABIT (P46029) Oligopeptide transporter, kidney isoform (P... 30 5.0
56S15A2_HUMAN (Q16348) Oligopeptide transporter, kidney isoform (P... 30 5.0
57MSX2_CANFA (Q9GK08) Homeobox protein MSX-2 (Hox-8) 30 5.0
58RNH_ERWCT (Q6D1V7) Ribonuclease H (EC 3.1.26.4) (RNase H) 30 5.0
59RNH_THET8 (P29253) Ribonuclease H (EC 3.1.26.4) (RNase H) 30 6.5
60RNH_THET2 (Q72IE1) Ribonuclease H (EC 3.1.26.4) (RNase H) 30 6.5
61RNH_ZYMMO (O69014) Ribonuclease H (EC 3.1.26.4) (RNase H) 30 6.5
62RNH_VIBCH (Q9KPX8) Ribonuclease HI (EC 3.1.26.4) (RNase HI) 30 6.5
63S15A2_MOUSE (Q9ES07) Oligopeptide transporter, kidney isoform (P... 30 8.5
64A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1 30 8.5 
>Y2253_MYCBO (P64956) Hypothetical protein Mb2253c|
          Length = 364

 Score = 99.8 bits (247), Expect = 7e-21
 Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
 Frame = -1

Query: 588 MVCVVHFDGASKGNPGKSGAGAVLMTED-GRVISRLREGLGVATNNVAEYRGLILGLKYA 412
           M  V+  DG S+GNPG +G GAV+ T D   V++  ++ +G ATNNVAEYRGLI GL  A
Sbjct: 1   MKVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDA 60

Query: 411 IRLGFKRIKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVHHVRREWNS 232
           ++LG     V  DS+LV  Q+ G W+ K  ++++L  + + L   F       V R  N+
Sbjct: 61  VKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNT 120

Query: 231 EADRQANIAITLASGAVSEE 172
            ADR AN A+  A+ + + +
Sbjct: 121 YADRLANDAMDAAAQSAAAD 140
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>Y2228_MYCTU (P64955) Hypothetical protein Rv2228c/MT2287|
          Length = 364

 Score = 99.8 bits (247), Expect = 7e-21
 Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
 Frame = -1

Query: 588 MVCVVHFDGASKGNPGKSGAGAVLMTED-GRVISRLREGLGVATNNVAEYRGLILGLKYA 412
           M  V+  DG S+GNPG +G GAV+ T D   V++  ++ +G ATNNVAEYRGLI GL  A
Sbjct: 1   MKVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDA 60

Query: 411 IRLGFKRIKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVHHVRREWNS 232
           ++LG     V  DS+LV  Q+ G W+ K  ++++L  + + L   F       V R  N+
Sbjct: 61  VKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNT 120

Query: 231 EADRQANIAITLASGAVSEE 172
            ADR AN A+  A+ + + +
Sbjct: 121 YADRLANDAMDAAAQSAAAD 140
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>EBSB_ENTFA (P36921) Cell wall enzyme ebsB|
          Length = 135

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAI--RL 403
           ++ D A+KGNPG+SG G V +T+  R   +L   LG+ +N+ AE++ LI  LK AI    
Sbjct: 4   IYVDAATKGNPGESGGGIVYLTDQSR--QQLHVPLGIVSNHEAEFKVLIEALKKAIANED 61

Query: 402 GFKRIKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVHHVRREWNSEAD 223
             + + ++ DS++V   ++  + AK E       E ++L++NF    +  +    N  AD
Sbjct: 62  NQQTVLLHSDSKIVVQTIEKNY-AKNEKYQPYLAEYQQLEKNFPLLLIEWLPESQNKAAD 120

Query: 222 RQANIAI 202
             A  A+
Sbjct: 121 MLARQAL 127
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>RNHL_BACSU (P54162) 14.7 kDa ribonuclease H-like protein|
          Length = 132

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 39/127 (30%), Positives = 61/127 (48%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGF 397
           ++ DGAS GNPG SG G + +  +G+  S     +GV TN  AE+  LI G+K     G+
Sbjct: 5   IYVDGASAGNPGPSGIG-IFIKHEGKAES-FSIPIGVHTNQEAEFLALIEGMKLCATRGY 62

Query: 396 KRIKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVHHVRREWNSEADRQ 217
           + +    DS +V  +       K        +E+ +L+  F  F +  +  + N +AD  
Sbjct: 63  QSVSFRTDSDIV-ERATELEMVKNITFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLL 121

Query: 216 ANIAITL 196
           A  AI L
Sbjct: 122 AKEAIRL 128
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>RNH_RALSO (Q8XZ91) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 151

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 46/147 (31%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGF 397
           V+ DGA KGNPG  G G VL++  G     L  G  V TNN  E   +I   +   R   
Sbjct: 6   VYSDGACKGNPGLGGWGTVLVS--GGHEKELFGGEAVTTNNRMELMAVIEAFRALKRP-- 61

Query: 396 KRIKVYGDSQ---------LVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVH---- 256
            R+KVY DSQ         L  ++ +G W+   +  ++     R L E  ++ EV     
Sbjct: 62  CRVKVYTDSQYVQKGISEWLAGWKARG-WKTADKKPVKNDDLWRTLDELVVTHEVSWHWV 120

Query: 255 --HVRREWNSEADRQANIAITLASGAV 181
             H     N  AD  AN  + +A  A+
Sbjct: 121 KGHAGHPGNERADALANKGVEIARQAI 147
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>RNH_HELPY (P56120) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 143

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DG+S GNPG  G  A+L  +D      +  G    TNN  E R L   LK   R    RI
Sbjct: 9   DGSSLGNPGPGGYAAILRYKDKE--KTISGGEEFTTNNRMELRALNEALKILKRP--CRI 64

Query: 387 KVYGDSQLVCYQVK---GTWQAK---KENMMELCKE 298
            +Y DSQ VC  +      WQ K   K   ++L KE
Sbjct: 65  TLYSDSQYVCQAINVWLANWQKKNFSKVKNVDLWKE 100
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>RNH_SYNY3 (Q55801) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 160

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGF 397
           ++ DGA   NPG  G GAV++  DGR    L  G  + TNN  E  G I  L +      
Sbjct: 10  LYTDGACSMNPGPGGYGAVILYGDGR-REELSAGYKMTTNNRMEIMGAIAALSHLQEP-- 66

Query: 396 KRIKVYGDSQLVCYQVKGTWQAK------KENMMELCKEVRKLQENFISFEVHHVRREW- 238
            ++ +Y DS+ +   +   W  K      + N  E  K     +      E H V  +W 
Sbjct: 67  SQVLLYTDSRYMVDAMSKGWAKKWKANGWQRNAKEKAKNPDLWETMLTLCEKHQVTFQWV 126

Query: 237 -----NSEADRQANIAI 202
                N E +R   +A+
Sbjct: 127 KAHAGNKENERCDRLAV 143
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>RNH_HELPJ (Q9ZLH3) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 143

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DG+S GNPG  G  A+L  +D      +  G    TNN  E R L   LK   R     I
Sbjct: 9   DGSSLGNPGPGGYAAILRYKDKE--KTISGGENFTTNNRMELRALNEALKILKRP--CHI 64

Query: 387 KVYGDSQLVCYQVK---GTWQAK---KENMMELCKEVRKLQE 280
            +Y DSQ VC  +      WQ K   K   ++L KE  K+ +
Sbjct: 65  TLYSDSQYVCQAINVWLVNWQKKNFAKVKNVDLWKEFVKVSK 106
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>RNH_BRAJA (Q89UU3) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 154

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 43/145 (29%), Positives = 55/145 (37%), Gaps = 14/145 (9%)
 Frame = -1

Query: 585 VCVVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIR 406
           V  ++ DGA  GNPG  G GA+L   D      L  G    TNN  E    I  L+ A++
Sbjct: 6   VVTIYTDGACSGNPGPGGWGAILKFGDKE--KELNGGERHTTNNQMELMAAISALE-ALK 62

Query: 405 LGFKRIKVYGDSQLVCYQVKGTWQAKKENMMELC-----KEVRKLQENFISFEVHHVRRE 241
                + +Y DSQ V   + G     K N          K V   Q    + + H VR  
Sbjct: 63  KPC-TVDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAALKAHQVRWH 121

Query: 240 W---------NSEADRQANIAITLA 193
           W         N  AD+ A   I  A
Sbjct: 122 WVKGHAGHPENERADQLARDGIVKA 146
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>RNH_WOLPM (Q73I74) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 145

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
 Frame = -1

Query: 579 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLG 400
           +++ DGA  GNPG  G  A+++ +D R     RE     TNN  E   +I GLK    L 
Sbjct: 7   IIYTDGACSGNPGAGGWAAIILFQDYRKDIYGRE--ENTTNNKMELTAVINGLKV---LK 61

Query: 399 FK-RIKVYGDSQLVCYQVK-----------GTWQAKKENMMELCKE---VRKLQENFISF 265
           F   I +Y DS  V + +             T   K    MEL KE   V    E    +
Sbjct: 62  FSCNINLYTDSLYVKHGITEWINKWKMNGWKTSNKKSVKNMELWKELDNVASQHEIDWKW 121

Query: 264 EVHHVRREWNSEADRQANIAI 202
              H   ++N EAD  A  AI
Sbjct: 122 VKAHSGDKYNEEADSLARKAI 142
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>YPEP_BACSU (P54164) Hypothetical protein ypeP|
          Length = 120

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = -1

Query: 489 RLREGLGVATNNVAEYRGLILGLKYAIRLGFKR--IKVYGDSQLVCYQVKGTWQAKKENM 316
           R  +   + TNN AEY  L   ++    LG  R  I + GDS +V  Q+ G+W     + 
Sbjct: 2   RKNKSFRLKTNNEAEYAALYEAIREVRELGASRNSITIKGDSLVVLNQLDGSWPCYDPSH 61

Query: 315 MELCKEVRKLQENF-ISFEVHHVRREWNSEAD 223
            E   ++  L E+  ++     ++R+ N EAD
Sbjct: 62  NEWLDKIEALLESLKLTPTYETIQRKDNQEAD 93
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>RNH_SYNEL (Q8DM24) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 159

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLG- 400
           ++ DGA +GNPG  G G V+   DG V   L       TNN  E +  I  LK   +L  
Sbjct: 7   IYTDGACEGNPGPGGWGVVIYFTDGSV-HELGGHHPATTNNRMELQAAIEALKAWRQLAP 65

Query: 399 FKRIKVYGDSQLVC---------YQVKGTWQAKKENMM--ELCKEVRKLQENFISFEVHH 253
              I +Y DS+ V          ++ +G   A K+ ++  +L +E+  L +  + +  HH
Sbjct: 66  GSAIALYTDSEYVLRGITEWIHHWKRRGWKTAAKKPVLNQDLWQELDALNDPLVQW--HH 123

Query: 252 VR 247
           VR
Sbjct: 124 VR 125
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>RNH_PSESM (Q87YT0) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 150

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 46/144 (31%), Positives = 60/144 (41%), Gaps = 17/144 (11%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DGA KGNPG  G GA+L+ +   V   L  G    TNN  E  G I GL+   R     +
Sbjct: 10  DGACKGNPGPGGWGALLVCKG--VEKELWGGEANTTNNRMELTGAIRGLEELKRP--CEV 65

Query: 387 KVYGDSQLVCYQVKG--TWQA--KKENMMELCKEVRKLQE--NFISFEV--HHVRREW-- 238
            +  DSQ   Y +KG   W    KK       KE  K  +    +  +V  H V+ +W  
Sbjct: 66  TLVTDSQ---YVMKGITEWMVNWKKRGWKTAAKEPVKNADLWQLLDEQVSRHTVKWQWVR 122

Query: 237 -------NSEADRQANIAITLASG 187
                  N  AD+ AN  +    G
Sbjct: 123 GHIGHPGNERADQLANRGVDEVRG 146
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>RNH_IDILO (Q5QZL3) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 157

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 22/53 (41%), Positives = 29/53 (54%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           ++ DG+  GNPG  G GAVL  E G+    L +G  + TNN  E    I GL+
Sbjct: 9   LYTDGSCLGNPGPGGYGAVL--EYGKHHKELSQGYRLTTNNRMEMLATIAGLR 59
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>RNH_THETN (Q8RA67) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 153

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTED-GRVISRLREGLGVATNNVAEYRGLILGLKYAIRLG 400
           ++ DGA  GNPG  G  AVL+ +   + IS   E     TNN  E +  I GLK A++  
Sbjct: 10  IYTDGACSGNPGPGGWAAVLIYKGIKKEISGFEEN---TTNNRMELKAAIEGLK-ALKRP 65

Query: 399 FKRIKVYGDSQLVCYQVKGTWQAK--KENMM----------ELCKEVRKL----QENFIS 268
            K + +Y DS  +       W  K  K N +          +L KE+ ++    Q N+I 
Sbjct: 66  CK-VNLYSDSSYLINAFNEGWIEKWQKNNWLKSDKTPVENQDLWKELLEVSKPHQINWIK 124

Query: 267 FEVHHVRREWNSEADRQA 214
            +  H   E+N+  DR A
Sbjct: 125 VK-GHSDNEYNNLCDRLA 141
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>RNH_BUCAP (Q08885) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 161

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DG+  GNPG  G G +L  +    I  L  G  + TNN  E  G+I GL+         I
Sbjct: 10  DGSCLGNPGSGGYGTILRYKLHEKI--LTSGFFLTTNNRMELMGVICGLESLKESCIVEI 67

Query: 387 KVYGDSQLVCYQVK---GTWQAKK 325
            +  DSQ V   +     TW+ KK
Sbjct: 68  TI--DSQYVKQGITNWIATWEKKK 89
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>RNH_HAEDU (Q7VM15) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 153

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DG+  GNPG  G G VL     +   ++ +G    TNN  E R +I GL  ++      +
Sbjct: 9   DGSCLGNPGPGGIGVVLRYNQHQ--KKVSQGYFQTTNNRMELRAVIEGL--SMLKEACNV 64

Query: 387 KVYGDSQLVCYQV-KGTWQAKKENMMELCKEVRKLQENFI----SFEVHHVRREW 238
            +Y DSQ +   + K  ++ KK N      +  K ++ ++      ++H++  +W
Sbjct: 65  TLYSDSQYMKNGITKWIFKWKKSNWKTANGKAVKNKDLWLLLDEKIQIHYIEWKW 119
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>CSD_METTH (O27442) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 400

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -1

Query: 606 PVSKQYMVCVVHFDGASKGNPGKSGAGAVL-MTEDGRVISRLREGLGVATNNVAEYRGLI 430
           PV   ++ C     G  +  P   G G VL ++EDG V+          T N+A + GL 
Sbjct: 221 PVGTGFLYCSTDVQGELE--PLMLGGGTVLDVSEDGYVLEDFPAKFEAGTLNIAGFIGLG 278

Query: 429 LGLKYAIRLGFKRIKVYG 376
             + Y  R+G +RI+ +G
Sbjct: 279 ASIDYMNRIGIRRIQKHG 296
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>RNH1_BACHD (Q9KEI9) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 196

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 26/74 (35%), Positives = 39/74 (52%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           D  S+GNPG      V  T+ G V+   RE + + TNN+ E+  ++ GL+Y ++    R 
Sbjct: 71  DVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRY-LKERNSRK 127

Query: 387 KVYGDSQLVCYQVK 346
            +Y DSQ     VK
Sbjct: 128 PIYSDSQTAIKWVK 141
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>RNH_STRCO (Q9X7R6) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 231

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGL 433
           DGASKGNPG +G   V+       +      LG ATNN+AE   L
Sbjct: 10  DGASKGNPGPAGWAWVVADASENPVRWEAGPLGKATNNIAELTAL 54
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>RNH_RICTY (Q68W20) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 152

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
 Frame = -1

Query: 579 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLG 400
           V++ DGA  GNPG  G GA+L   D     ++     V TNN  E    +  L+   +  
Sbjct: 6   VIYTDGACSGNPGPGGWGALLKFNDAS--KKIFGYELVTTNNRMEMTAALEALRVLKKSS 63

Query: 399 FKRIKVYGDSQLVCYQV--------KGTWQAKKENMMELCKEVRKLQENFISFEVHHVRR 244
              +++Y DS+ + + +        K  W    +N  E  K V   Q+ +     H +  
Sbjct: 64  I--VEIYTDSKYLQHGITVWIHNWMKNNW---CKNNNEPVKNVDLWQKLYSELSKHTIMW 118

Query: 243 EW-NSEADRQANIA 205
            W    A    NIA
Sbjct: 119 RWVKGHASNSGNIA 132
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>RNH_HAEIN (P43807) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 154

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DG+  GNPG  G GAVL  +       L +G    TNN  E R +I  L          I
Sbjct: 10  DGSCLGNPGAGGIGAVLRYKQHE--KTLSKGYFQTTNNRMELRAVIEALNTLKEPCL--I 65

Query: 387 KVYGDSQLVCYQV-KGTWQAKKENMMELCKEVRKLQENFI----SFEVHHVRREW 238
            +Y DSQ +   + K  +  KK N      +  K Q+ +I    S + H +  +W
Sbjct: 66  TLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQW 120
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>RNH_HAEI8 (Q4QP49) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 154

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DG+  GNPG  G GAVL  +       L +G    TNN  E R +I  L          I
Sbjct: 10  DGSCLGNPGAGGIGAVLRYKQHE--KMLSKGYFKTTNNRMELRAVIEALNTLKEPCL--I 65

Query: 387 KVYGDSQLVCYQV-KGTWQAKKENMMELCKEVRKLQENFI----SFEVHHVRREW 238
            +Y DSQ +   + K  +  KK N      +  K Q+ +I    S + H +  +W
Sbjct: 66  TLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKNQDLWIALDESIQRHKINWQW 120
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>RNH_SILPO (Q5LNJ2) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 155

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLRE---GLGVATNNVAEYRGLILGLKYAIRLGF 397
           DGA  GNPG  G G +L   +G  + + RE   G    TNN  E    I  L+   R   
Sbjct: 9   DGACSGNPGPGGWGVLLRAIEGETVLKERELCGGEAETTNNRMELLAAINALETLERP-- 66

Query: 396 KRIKVYGDSQLVCYQVKG 343
            +I V  DS  V   V G
Sbjct: 67  SKITVVTDSAYVKNGVTG 84
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>RNH_CAUCR (Q9A341) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 149

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 25/72 (34%), Positives = 35/72 (48%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGF 397
           ++ DGA KGNPG  G GA+L   D +    +  G    TNN  E    I  L+   R   
Sbjct: 7   IYTDGACKGNPGPGGWGAILFYGDKK--KEICGGEPGTTNNRMELMAAIQALELLNRPCV 64

Query: 396 KRIKVYGDSQLV 361
             ++++ DSQ V
Sbjct: 65  --VELHTDSQYV 74
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>RNH_XANOR (Q5H426) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 150

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           VH DG+  GNPG  G  A L+  +GR    L  G  V+TNN  E    I+ L+
Sbjct: 6   VHTDGSCLGNPG-PGGWAALLRYNGRE-KELAGGEAVSTNNRMELMAAIMALE 56
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>RNH_XANAC (Q8PNH8) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 150

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           VH DG+  GNPG  G  A L+  +GR    L  G  V+TNN  E    I+ L+
Sbjct: 6   VHTDGSCLGNPG-PGGWAALLRYNGRE-KELAGGEAVSTNNRMELMAAIMALE 56
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>RNH_PSEAE (Q9I2S9) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 148

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -1

Query: 579 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGL 421
           V++ DGA KGNPG+ G GA+L+ +       L  G    TNN  E    I  L
Sbjct: 8   VIYTDGACKGNPGRGGWGALLLYKGAE--RELWGGEPDTTNNRMELMAAIQAL 58
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>RNH_NEIG1 (Q5F7K9) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 145

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 24/53 (45%), Positives = 27/53 (50%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           ++ DGA KGNPG  G G VLM    R    L  G    TNN  E   +I GLK
Sbjct: 7   LYTDGACKGNPGAGGWG-VLMRYGSRE-KELFGGEAQTTNNRMELTAVIEGLK 57
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>RNH_NEIMB (Q9JYE5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 145

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           ++ DGA KGNPG  G G ++    G     L  G    TNN  E   +I GLK
Sbjct: 7   LYTDGACKGNPGAGGWGVLM--RYGSHEKELFGGEAQTTNNRMELTAVIEGLK 57
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>RNH_NEIMA (Q9JTD9) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 145

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           ++ DGA KGNPG  G G ++    G     L  G    TNN  E   +I GLK
Sbjct: 7   LYTDGACKGNPGAGGWGVLM--RYGSHEKELFGGEAQTTNNRMELTAVIEGLK 57
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>RNH_PHOLU (Q8GF77) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 156

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIR 406
           DG+  GNPG  G G +L  +       L EG    TNN  E    I+GL+   R
Sbjct: 10  DGSCLGNPGPGGYGVLLRYQQHE--KTLSEGFYRTTNNRMELMAAIIGLETLTR 61
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>RNH_PHOLL (Q7N807) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 156

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIR 406
           DG+  GNPG  G G +L  +       L EG    TNN  E    I+GL+   R
Sbjct: 10  DGSCLGNPGPGGYGVLLRYQQHE--KTLSEGFYHTTNNRMELMAAIIGLETLTR 61
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>RNH_VIBPA (Q87MG2) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 154

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DG+  GNPG  G G VL  +D  V   L +G  + TNN  E    ++ L+
Sbjct: 10  DGSCLGNPGPGGYGIVLRYKD--VEKTLSKGYTLTTNNRMEMLAAVVALQ 57
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>RNH_RICCN (Q92GL5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 152

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
 Frame = -1

Query: 579 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGV---ATNNVAEYRGLILGLKYAI 409
           V++ DGA  GNPG  G GA+L   D       +E  G     TNN  E    +  L+  I
Sbjct: 6   VIYTDGACAGNPGPGGWGALLQFND-----TSKEVFGYELDTTNNRMEITAALEALR--I 58

Query: 408 RLGFKRIKVYGDSQL--------VCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVHH 253
                 I++Y DS+         +   +K  W  K  N  E  K     Q+ +     H 
Sbjct: 59  LKKSCNIEIYTDSKYLQQGITAWIHNWIKNNW-CKSNN--EPVKNADLWQKLYAELSKHT 115

Query: 252 VRREW-NSEADRQANIA 205
           +  +W    A+   NIA
Sbjct: 116 IIWKWVKGHANNSGNIA 132
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>RNH_VIBVY (Q7MII6) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 155

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DG+  GNPG  G G VL  +  +V   L +G  + TNN  E    I+ L+
Sbjct: 10  DGSCLGNPGPGGYGVVLRYK--QVEKTLAQGYRLTTNNRMEMMATIVALQ 57
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>RNH_VIBVU (Q8DBD5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 155

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DG+  GNPG  G G VL  +  +V   L +G  + TNN  E    I+ L+
Sbjct: 10  DGSCLGNPGPGGYGVVLRYK--QVEKTLAQGYRLTTNNRMEMMATIVALQ 57
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>RNH_PASMU (P57813) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 154

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DG+  GNPG  G G +L  +      ++  G  + TNN  E R +I  L          +
Sbjct: 10  DGSCLGNPGPGGIGVLLRYKQHE--KQISAGYFLTTNNRMELRAVIEALNTLKEP--CSV 65

Query: 387 KVYGDSQLVCYQV-KGTWQAKKENMMELCKEVRKLQENFI----SFEVHHVRREW 238
            ++ DSQ +   + K  +  KK N      +  K Q+ +I    + + HH+  +W
Sbjct: 66  TLHSDSQYMKNGITKWIFNWKKNNWKASTGKPVKNQDLWIQLDQAIQRHHINWQW 120
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>RNH_PSEPK (Q88FF5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 148

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 41/136 (30%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKR- 391
           DGA KGNPG  G G VLM   G V   L  G    TNN  E    I GL     +  KR 
Sbjct: 10  DGACKGNPGPGGWG-VLMIYKG-VEKELWGGERETTNNRMELMAAIQGL-----MSLKRE 62

Query: 390 --IKVYGDSQLVCYQV--------KGTWQAKKENMMELCKEVRKLQENFISFEV------ 259
             + +  DSQ V   +        K  W+   +  ++     ++L E     +V      
Sbjct: 63  CEVVLTTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKNADLWQQLDEQVNRHKVTWKWVR 122

Query: 258 HHVRREWNSEADRQAN 211
            H+    N  AD+ AN
Sbjct: 123 GHIGHPGNERADQLAN 138
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>RNH_WIGBR (Q8D3D3) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 157

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           +  DGA  GNPG  G G ++  +  ++   +  G  + TNN  E    I+ L+
Sbjct: 7   IFIDGACLGNPGPGGYGVIICGK--KLYKEISNGYYLTTNNRMEIMAAIIALE 57
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>RNH_RICPR (Q9ZCK3) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 152

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 9/134 (6%)
 Frame = -1

Query: 579 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLG 400
           V++ DGA  GNPG  G GA+L   D     ++     V TNN  E    +  L+   +  
Sbjct: 6   VIYTDGACSGNPGPGGWGALLHFND--TSKKIFGYELVTTNNRMEMTAALEALRILKKSS 63

Query: 399 FKRIKVYGDSQLVCY--------QVKGTWQAKKENMMELCKEVRKLQENFISFEVHHVRR 244
              +++Y DS+ + +         +K  W  K  N     K     Q+ +     H +  
Sbjct: 64  V--VEIYTDSKYLQHGITVWIHNWIKNNW-CKSNNAP--VKNADLWQKLYSELSKHTIMW 118

Query: 243 EW-NSEADRQANIA 205
           +W    A    NIA
Sbjct: 119 KWVKGHASNSGNIA 132
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>RNH_RICFE (Q4UN27) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 152

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
 Frame = -1

Query: 579 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGV---ATNNVAEYRGLILGLKYAI 409
           V++ DGA  GNPG  G GA+L   D       +E  G     TNN  E    +  L+  I
Sbjct: 6   VIYTDGACAGNPGPGGWGALLQFND-----TSKEIFGYELDTTNNRMEITAALEALR--I 58

Query: 408 RLGFKRIKVYGDSQL--------VCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVHH 253
                 +++Y DS+         +   +K  W  K  N  E  K     Q+ +     H 
Sbjct: 59  LKKSCNVEIYTDSKYLQQGITAWIHNWIKNNW-CKSNN--EPVKNADLWQKLYAELSKHT 115

Query: 252 VRREW-NSEADRQANIA 205
           +  +W    A+   NIA
Sbjct: 116 IIWKWVKGHANNSGNIA 132
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>RNH_MYCSM (Q07705) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 159

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -1

Query: 579 VVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLG----VATNNVAEYRGLILGLKYA 412
           ++H DG  + NPG  G GAVL     R    +RE  G    V +NN  E    I+ L+  
Sbjct: 7   IIHTDGGCRPNPGPGGWGAVL-----RHREHVREMFGGEAAVTSNNRMELTAPIMALEAL 61

Query: 411 IRLGFKRIKVYGDSQLV 361
            R     + +Y DS  V
Sbjct: 62  TRP--VTVHLYTDSTYV 76
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>RNH_XANCP (Q8PBX8) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 150

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -1

Query: 576 VHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           VH DG+  GNPG  G  A L+  +GR    L  G   +TNN  E    I+ L+
Sbjct: 6   VHTDGSCLGNPG-PGGWAALLRYNGRE-KELAGGEANSTNNRMELMAAIMALE 56
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>RNH_RHIME (Q92RG0) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 153

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGL 421
           DGA  GNPG  G GAVL    G V   +  G    TNN  E    I  L
Sbjct: 9   DGACSGNPGPGGWGAVL--RYGDVEKEMSGGEAETTNNRMELLAAISAL 55
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>RNH_BRUSU (P66674) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 154

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/83 (32%), Positives = 36/83 (43%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DGA  GNPG  G GA+L          L+ G    TNN  E    I  L  A++   + +
Sbjct: 9   DGACSGNPGPGGWGALLRWNGNE--KELKGGEAETTNNRMELMAAISALS-ALKEPCE-V 64

Query: 387 KVYGDSQLVCYQVKGTWQAKKEN 319
            +Y DS  V   + G  +  K N
Sbjct: 65  DLYTDSVYVRDGISGWIEGWKRN 87
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>RNH_BRUME (P66673) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 154

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/83 (32%), Positives = 36/83 (43%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DGA  GNPG  G GA+L          L+ G    TNN  E    I  L  A++   + +
Sbjct: 9   DGACSGNPGPGGWGALLRWNGNE--KELKGGEAETTNNRMELMAAISALS-ALKEPCE-V 64

Query: 387 KVYGDSQLVCYQVKGTWQAKKEN 319
            +Y DS  V   + G  +  K N
Sbjct: 65  DLYTDSVYVRDGISGWIEGWKRN 87
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>RNH_BRUAB (Q57EP4) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 154

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/83 (32%), Positives = 36/83 (43%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 388
           DGA  GNPG  G GA+L          L+ G    TNN  E    I  L  A++   + +
Sbjct: 9   DGACSGNPGPGGWGALLRWNGNE--KELKGGEAETTNNRMELMAAISALS-ALKEPCE-V 64

Query: 387 KVYGDSQLVCYQVKGTWQAKKEN 319
            +Y DS  V   + G  +  K N
Sbjct: 65  DLYTDSVYVRDGISGWIEGWKRN 87
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>RNH_SALTY (P0A2B9) Ribonuclease HI (EC 3.1.26.4) (RNase HI) (Ribonuclease H)|
           (RNase H)
          Length = 155

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DG+  GNPG  G GA+L            EG  + TNN  E    I+ L+
Sbjct: 10  DGSCLGNPGPGGYGAILRYRGHE--KTFSEGYTLTTNNRMELMAAIVALE 57
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>RNH_SALTI (P0A2C0) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 155

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DG+  GNPG  G GA+L            EG  + TNN  E    I+ L+
Sbjct: 10  DGSCLGNPGPGGYGAILRYRGHE--KTFSEGYTLTTNNRMELMAAIVALE 57
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>RNH_SALPA (Q5PFD8) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 155

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DG+  GNPG  G GA+L            EG  + TNN  E    I+ L+
Sbjct: 10  DGSCLGNPGPGGYGAILRYRGHE--KTFSEGYTLTTNNRMELMAAIVALE 57
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>HIS6_CAMJR (Q5HSI8) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 255

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
 Frame = -1

Query: 351 VKGTWQAKKENMMELCKEVRKLQENFI----------SFEVHHVRREWNSEADRQANIAI 202
           VKGT     ++M ++ +  R   +N I          S     + REW SE  +  NI+ 
Sbjct: 18  VKGTQFKNHKDMGDIIELARYYSQNGIDELVFYDIAASARKERISREWVSEVAKNINISF 77

Query: 201 TLASGAVSEE 172
            +A G  SEE
Sbjct: 78  CVAGGIKSEE 87
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>HIS61_CAMJE (Q9PM72) Imidazole glycerol phosphate synthase subunit hisF1 (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF1) (ImGP synthase subunit hisF1) (IGPS
           subunit hisF1)
          Length = 255

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
 Frame = -1

Query: 351 VKGTWQAKKENMMELCKEVRKLQENFI----------SFEVHHVRREWNSEADRQANIAI 202
           VKGT     ++M ++ +  R   +N I          S     + REW SE  +  NI+ 
Sbjct: 18  VKGTQFKNHKDMGDIIELARYYSQNGIDELVFYDIAASARKERISREWVSEVAKNINISF 77

Query: 201 TLASGAVSEE 172
            +A G  SEE
Sbjct: 78  CVAGGIKSEE 87
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>RNH_AGRT5 (Q8UHA7) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 146

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/49 (42%), Positives = 21/49 (42%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGL 421
           DGA  GNPG  G GAVL    G     L  G    TNN  E    I  L
Sbjct: 9   DGACSGNPGPGGWGAVL--RYGETEKELSGGEADTTNNRMELLAAISAL 55
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>S15A2_RABIT (P46029) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = -2

Query: 203 SLSQAARFLRSVAMASELLTVTLSDYN*SMYLVNSILP*KEVNGSLCWSGYLCPFSCI*L 24
           S SQA   ++SV  A+ LLTV + +          +L   + +G + W+ ++  FSC+ L
Sbjct: 633 SYSQAPSSMKSVLQAAWLLTVAIGNI--------IVLVVAQFSGLVQWAEFVL-FSCLLL 683

Query: 23  VLCL 12
           V+CL
Sbjct: 684 VVCL 687
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>S15A2_HUMAN (Q16348) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = -2

Query: 203 SLSQAARFLRSVAMASELLTVTLSDYN*SMYLVNSILP*KEVNGSLCWSGYLCPFSCI*L 24
           S SQA   ++SV  A+ LLT+ + +          +L   + +G + W+ ++  FSC+ L
Sbjct: 633 SYSQAPSSMKSVLQAAWLLTIAVGNI--------IVLVVAQFSGLVQWAEFIL-FSCLLL 683

Query: 23  VLCL 12
           V+CL
Sbjct: 684 VICL 687
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>MSX2_CANFA (Q9GK08) Homeobox protein MSX-2 (Hox-8)|
          Length = 267

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +2

Query: 464 ATPRPSRS-------RDITLPSSVISTAPAPDFPGFPFEAPS 568
           A+PRP+ S       R + LP      AP+P  PG PFEA S
Sbjct: 62  ASPRPADSASAGAALRPLLLPGHGAREAPSPGPPGKPFEAAS 103
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>RNH_ERWCT (Q6D1V7) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 154

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DG+  GNPG  G GAVL  +       L  G  + TNN  E    I  L+
Sbjct: 10  DGSCLGNPGPGGYGAVLRYKQHE--KALSAGYRLTTNNRMELMAAIAALE 57
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>RNH_THET8 (P29253) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 166

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DGA  GNPG  G  A+L       +  L  G    TNN  E +  I GLK
Sbjct: 14  DGACLGNPGPGGWAALLRFHAHEKL--LSGGEACTTNNRMELKAAIEGLK 61
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>RNH_THET2 (Q72IE1) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 166

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DGA  GNPG  G  A+L       +  L  G    TNN  E +  I GLK
Sbjct: 14  DGACLGNPGPGGWAALLRFNAHEKL--LSGGEACTTNNRMELKAAIEGLK 61
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>RNH_ZYMMO (O69014) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 156

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 600 SKQYMVCVVHFDGASKGNPGKSGAGAVL 517
           S Q  + ++  DGA KGNPG  G GA+L
Sbjct: 5   STQDKIVMIATDGACKGNPGFGGWGALL 32
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>RNH_VIBCH (Q9KPX8) Ribonuclease HI (EC 3.1.26.4) (RNase HI)|
          Length = 156

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 567 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLK 418
           DG+  GNPG  G G V+  +  +V   L  G  + TNN  E    ++ L+
Sbjct: 10  DGSCLGNPGPGGYGIVMRYK--QVEKTLARGYRLTTNNRMEMLAAVMALQ 57
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>S15A2_MOUSE (Q9ES07) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = -2

Query: 203 SLSQAARFLRSVAMASELLTVTLSDYN*SMYLVNSILP*KEVNGSLCWSGYLCPFSCI*L 24
           S SQA   ++SV  A+ LLTV + +          +L   + +G + W+ ++  FSC+ L
Sbjct: 633 SYSQAPSSMKSVLQAAWLLTVAVGNI--------IVLIVAQFSGLVQWAEFVL-FSCLLL 683

Query: 23  VLCL 12
           V+CL
Sbjct: 684 VVCL 687
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>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1|
          Length = 397

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 395 LNPSLMAYFRPKIRPRYSATLLVATPRPSRSRDITLPSSVISTAPAPDFP 544
           LNP + A + P+    Y+ T+L+       S   + PSS++ T+  P FP
Sbjct: 211 LNPVVGAVYSPEF---YAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFP 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,357,545
Number of Sequences: 219361
Number of extensions: 1840257
Number of successful extensions: 5164
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 4966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5152
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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