ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63c16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196842.1| Oryza sativa (japonica cultivar-group) putative... 402 e-109
2dbj|AK101347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 394 e-106
3dbj|AK071427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 389 e-105
4gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 gen... 157 6e-35
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 157 6e-35
7ref|XM_480354.1| Oryza sativa (japonica cultivar-group), mRNA 54 6e-04
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
9dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
10dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
11ref|NM_111007.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 52 0.002
12gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC... 52 0.002
13gb|BT010430.1| Arabidopsis thaliana At3g01410 mRNA, complete cds 52 0.002
14dbj|AK176396.1| Arabidopsis thaliana mRNA for putative RNase H, ... 52 0.002
15gb|BT017897.1| Zea mays clone EL01N0515G04.c mRNA sequence 46 0.15
16gb|AY104723.1| Zea mays PCO115255 mRNA sequence 46 0.15
17ref|XM_462905.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
18gb|AC149223.2| Mus musculus BAC clone RP23-203K1 from chromosome... 42 2.3
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.3
20gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosom... 42 2.3
21gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete se... 42 2.3
22emb|AL121904.13|HSDJ410C9 Human DNA sequence from clone RP3-410C... 42 2.3
23emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 o... 42 2.3
24gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosom... 42 2.3
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
27gb|AC107425.6| Homo sapiens 3 BAC RP11-497L23 (Roswell Park Canc... 42 2.3
28gb|AC005230.1|AC005230 Homo sapiens PAC clone RP5-1163L11 from 1... 42 2.3
29gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genom... 42 2.3
30dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
31dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
32emb|AL445903.3|CNS07EEU Human chromosome 14 DNA sequence BAC R-1... 42 2.3
33gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, compl... 42 2.3
34gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, co... 42 2.3
35gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer... 40 9.1
36gb|AC147243.2| Mus musculus BAC clone RP23-444P22 from chromosom... 40 9.1
37gb|AC125175.4| Mus musculus BAC clone RP24-572I8 from chromosome... 40 9.1
38emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in l... 40 9.1
39gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete... 40 9.1
40ref|XM_541477.2| PREDICTED: Canis familiaris similar to leucine ... 40 9.1
41ref|XM_662079.1| Cryptosporidium hominis TU502 cytoskeletal prot... 40 9.1
42emb|AL356312.12| Human DNA sequence from clone RP11-172A19 on ch... 40 9.1
43emb|AL645587.9| Mouse DNA sequence from clone RP23-171O15 on chr... 40 9.1
44gb|AC148527.20| Medicago truncatula clone mth2-49g13, complete s... 40 9.1
45gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, comp... 40 9.1
46emb|BX677663.6| Zebrafish DNA sequence from clone DKEY-76N12 in ... 40 9.1
47ref|XM_626490.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 9.1
48emb|AL928869.11| Mouse DNA sequence from clone RP23-393F9 on chr... 40 9.1
49gb|AC110999.4| Homo sapiens BAC clone RP13-588I20 from 4, comple... 40 9.1
50gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Can... 40 9.1
51gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome... 40 9.1
52gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 40 9.1
53emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in ... 40 9.1
54gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B ... 40 9.1
55gb|AY609577.1| Sus scrofa clone Clu_194599.scr.msk.p1.Contig2, m... 40 9.1
56gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complet... 40 9.1
57emb|AL672274.7| Mouse DNA sequence from clone RP23-351G20 on chr... 40 9.1
58emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chro... 40 9.1 
>ref|NM_196842.1| Oryza sativa (japonica cultivar-group) putative RNase
           (OSJNBb0011A08.1), mRNA
          Length = 1411

 Score =  402 bits (203), Expect = e-109
 Identities = 395/459 (86%)
 Strand = Plus / Minus

                                                                       
Query: 159 agccatcgccacgctcctcagaaaccgcgccgcttgcgagagtgatggctatgtttgcct 218
           |||||||||||||||||||||| ||| | || || |  ||||| || ||||||||||| |
Sbjct: 868 agccatcgccacgctcctcagagaccacaccactggaaagagtaatagctatgtttgctt 809

                                                                       
Query: 219 ggcgatcagcctcagagttccattcccgtcgcacatggtggacctcaaaagagatgaagt 278
           ||||||| ||||| |  |||||||||||||| |  |||| || |||||| |||| |||||
Sbjct: 808 ggcgatctgcctcggcattccattcccgtcgaatgtggttgatctcaaatgagacgaagt 749

                                                                       
Query: 279 tctcttgaagttttctcacttctttgcacagttccatcatgttctctttctttgcttgcc 338
           | ||||  || ||||||||||| ||||||||||||||||||||||  ||||| | |||||
Sbjct: 748 tttctttgagctttctcacttccttgcacagttccatcatgttctggttcttcgtttgcc 689

                                                                       
Query: 339 atgtacctttcacctgataacagactagttgagagtcaccatatactttgattctcttga 398
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 688 atgtacctttcacctgataacagactagttgagagtcgccatatactatgattttcttga 629

                                                                       
Query: 399 atccaagcctgatggcatatttcaggcctaagataaggccccgatactcagcaacattat 458
           | ||| |||| || |||||| |||  |||||||| |||||||| || |||||||||||||
Sbjct: 628 aaccatgcctaatagcatatctcaatcctaagatcaggccccggtattcagcaacattat 569

                                                                       
Query: 459 tggtagcaacaccaagaccctcacggagtcgagatatcactcttccgtcttcagtcatca 518
           ||||| ||| |||||||||||| || ||||||||||||||||| || ||||||||||| |
Sbjct: 568 tggtaacaataccaagaccctcgcgaagtcgagatatcactctcccatcttcagtcataa 509

                                                                       
Query: 519 gtacagctccagcacctgattttcctgggtttccttttgaagcaccatcaaagtgaacaa 578
           | ||||| |||||||| | ||||||||| |||||||| || |||||||| |||||||  |
Sbjct: 508 gcacagccccagcacccgcttttcctggatttcctttcgatgcaccatcgaagtgaagta 449

                                                  
Query: 579 cacataccatatattgttttgagacaggttgtgcatcaa 617
             ||||||||||||||||| |||| ||||||||||||||
Sbjct: 448 agcataccatatattgtttcgagagaggttgtgcatcaa 410
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>dbj|AK101347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034L02, full
            insert sequence
          Length = 1705

 Score =  394 bits (199), Expect = e-106
 Identities = 394/459 (85%)
 Strand = Plus / Minus

                                                                        
Query: 159  agccatcgccacgctcctcagaaaccgcgccgcttgcgagagtgatggctatgtttgcct 218
            |||||||||||||||||||||| ||| | || || |  ||||| || ||||||||||| |
Sbjct: 1185 agccatcgccacgctcctcagagaccacaccactggaaagagtaatagctatgtttgctt 1126

                                                                        
Query: 219  ggcgatcagcctcagagttccattcccgtcgcacatggtggacctcaaaagagatgaagt 278
            ||||||| ||||| |  |||||||||||||| |  |||| || |||||| |||| |||||
Sbjct: 1125 ggcgatctgcctcggcattccattcccgtcgaatgtggttgatctcaaatgagacgaagt 1066

                                                                        
Query: 279  tctcttgaagttttctcacttctttgcacagttccatcatgttctctttctttgcttgcc 338
            | ||||  || ||||||||||| |||||||||||||||||||||   ||||| | |||||
Sbjct: 1065 tttctttgagctttctcacttccttgcacagttccatcatgttccggttcttcgtttgcc 1006

                                                                        
Query: 339  atgtacctttcacctgataacagactagttgagagtcaccatatactttgattctcttga 398
            ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 1005 atgtacctttcacctgataacagactagttgagagtcgccatatactatgattttcttga 946

                                                                        
Query: 399  atccaagcctgatggcatatttcaggcctaagataaggccccgatactcagcaacattat 458
            | ||| |||| || |||||| |||  |||||||| |||||||| || |||||||||||||
Sbjct: 945  aaccatgcctaatagcatatctcaatcctaagatcaggccccggtattcagcaacattat 886

                                                                        
Query: 459  tggtagcaacaccaagaccctcacggagtcgagatatcactcttccgtcttcagtcatca 518
            ||||| ||| |||||||||||| || ||||||||||||||||| || ||||||||||| |
Sbjct: 885  tggtaacaataccaagaccctcgcgaagtcgagatatcactctcccatcttcagtcataa 826

                                                                        
Query: 519  gtacagctccagcacctgattttcctgggtttccttttgaagcaccatcaaagtgaacaa 578
            | ||||| |||||||| | ||||||||| |||||||| || |||||||| |||||||  |
Sbjct: 825  gcacagccccagcacccgcttttcctggatttcctttcgatgcaccatcgaagtgaagta 766

                                                   
Query: 579  cacataccatatattgttttgagacaggttgtgcatcaa 617
              ||||||||||||||||| |||| ||||||||||||||
Sbjct: 765  agcataccatatattgtttcgagagaggttgtgcatcaa 727
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>dbj|AK071427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098H16, full
            insert sequence
          Length = 1556

 Score =  389 bits (196), Expect = e-105
 Identities = 394/459 (85%), Gaps = 2/459 (0%)
 Strand = Plus / Minus

                                                                        
Query: 159  agccatcgccacgctcctcagaaaccgcgccgcttgcgagagtgatggctatgtttgcct 218
            |||||||||||||||||||||| ||| | || || |  ||||| || ||||||||||| |
Sbjct: 1209 agccatcgccacgctcctcagagaccacaccactggaaagagtaatagctatgtttgctt 1150

                                                                        
Query: 219  ggcgatcagcctcagagttccattcccgtcgcacatggtggacctcaaaagagatgaagt 278
            ||||||| ||||| |  |||||||||||||| |  |||| || |||||| |||| |||||
Sbjct: 1149 ggcgatctgcctcggcattccattcccgtcgaatgtggttgatctcaaatgagacgaagt 1090

                                                                        
Query: 279  tctcttgaagttttctcacttctttgcacagttccatcatgttctctttctttgcttgcc 338
            | ||||  || ||||||||||| ||||||||||||||||||||||  ||||| | |||||
Sbjct: 1089 tttctttgagctttctcacttccttgcacagttccatcatgttctggttcttcgtttgcc 1030

                                                                        
Query: 339  atgtacctttcacctgataacagactagttgagagtcaccatatactttgattctcttga 398
            ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 1029 atgtacctttcacctgataacagactagttgagagtcgccatatactatgattttcttga 970

                                                                        
Query: 399  atccaagcctgatggcatatttcaggcctaagataaggccccgatactcagcaacattat 458
            | ||| |||| || |||||| |||  |||||||| |||||||| || |||||||||||||
Sbjct: 969  aaccatgcctaatagcatatctcaatcctaagatcaggccccggtattcagcaacattat 910

                                                                        
Query: 459  tggtagcaacaccaagaccctcacggagtcgagatatcactcttccgtcttcagtcatca 518
            ||||| ||| |||||||||||| || ||||||||||||||||  || ||||||||||| |
Sbjct: 909  tggtaacaataccaagaccctcgcgaagtcgagatatcactc--ccatcttcagtcataa 852

                                                                        
Query: 519  gtacagctccagcacctgattttcctgggtttccttttgaagcaccatcaaagtgaacaa 578
            | ||||| |||||||| | ||||||||| |||||||| || |||||||| |||||||  |
Sbjct: 851  gcacagccccagcacccgcttttcctggatttcctttcgatgcaccatcgaagtgaagta 792

                                                   
Query: 579  cacataccatatattgttttgagacaggttgtgcatcaa 617
              ||||||||||||||||| |||| ||||||||||||||
Sbjct: 791  agcataccatatattgtttcgagagaggttgtgcatcaa 753
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>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete
             sequence
          Length = 117157

 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Plus

                                                                         
Query: 350   acctgataacagactagttgagagtcaccatatactttgattctcttgaatccaagcctg 409
             |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| |||| 
Sbjct: 27938 acctgataacagactagttgagagtcgccatatactatgattttcttgaaaccatgccta 27997

                                                                         
Query: 410   atggcatatttcaggcctaagataaggccccgatactcagcaacattattggtagcaaca 469
             || |||||| |||  |||||||| |||||||| || |||||||||||||||||| ||| |
Sbjct: 27998 atagcatatctcaatcctaagatcaggccccggtattcagcaacattattggtaacaata 28057

                                        
Query: 470   ccaagaccctcacggagtcgagatatc 496
             ||||||||||| || ||||||||||||
Sbjct: 28058 ccaagaccctcgcgaagtcgagatatc 28084



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                         
Query: 262   ctcaaaagagatgaagttctcttgaagttttctcacttctttgcacagttccatcatgtt 321
             |||||| |||| |||||| ||||  || ||||||||||| ||||||||||||||||||||
Sbjct: 27445 ctcaaatgagacgaagttttctttgagctttctcacttccttgcacagttccatcatgtt 27504

                                             
Query: 322   ctctttctttgcttgccatgtacctttcacct 353
             ||  ||||| | ||||||||||||||||||||
Sbjct: 27505 ctggttcttcgtttgccatgtacctttcacct 27536



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                         
Query: 496   cactcttccgtcttcagtcatcagtacagctccagcacctgattttcctgggtttccttt 555
             |||||| || ||||||||||| || ||||| |||||||| | ||||||||| ||||||||
Sbjct: 28164 cactctcccatcttcagtcataagcacagccccagcacccgcttttcctggatttccttt 28223

                                 
Query: 556   tgaagcaccatcaaagtgaa 575
              || |||||||| |||||||
Sbjct: 28224 cgatgcaccatcgaagtgaa 28243



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 159   agccatcgccacgctcctcaga 180
             ||||||||||||||||||||||
Sbjct: 26999 agccatcgccacgctcctcaga 27020



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 589   atattgttttgagacaggttgtgcatcaa 617
             ||||||||| |||| ||||||||||||||
Sbjct: 29272 atattgtttcgagagaggttgtgcatcaa 29300



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 197   agagtgatggctatgtttgcctggcgatcagcctcagagttccattcc 244
             ||||| || ||||||||||| |||||||| ||||| |  |||||||||
Sbjct: 27116 agagtaatagctatgtttgcttggcgatctgcctcggcattccattcc 27163
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                            
Query: 350      acctgataacagactagttgagagtcaccatatactttgattctcttgaatccaagcctg 409
                |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| |||| 
Sbjct: 16330145 acctgataacagactagttgagagtcgccatatactatgattttcttgaaaccatgccta 16330086

                                                                            
Query: 410      atggcatatttcaggcctaagataaggccccgatactcagcaacattattggtagcaaca 469
                || |||||| |||  |||||||| |||||||| || |||||||||||||||||| ||| |
Sbjct: 16330085 atagcatatctcaatcctaagatcaggccccggtattcagcaacattattggtaacaata 16330026

                                           
Query: 470      ccaagaccctcacggagtcgagatatc 496
                ||||||||||| || ||||||||||||
Sbjct: 16330025 ccaagaccctcgcgaagtcgagatatc 16329999



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                            
Query: 262      ctcaaaagagatgaagttctcttgaagttttctcacttctttgcacagttccatcatgtt 321
                |||||| |||| |||||| ||||  || ||||||||||| ||||||||||||||||||||
Sbjct: 16330638 ctcaaatgagacgaagttttctttgagctttctcacttccttgcacagttccatcatgtt 16330579

                                                
Query: 322      ctctttctttgcttgccatgtacctttcacct 353
                ||  ||||| | ||||||||||||||||||||
Sbjct: 16330578 ctggttcttcgtttgccatgtacctttcacct 16330547



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                            
Query: 496      cactcttccgtcttcagtcatcagtacagctccagcacctgattttcctgggtttccttt 555
                |||||| || ||||||||||| || ||||| |||||||| | ||||||||| ||||||||
Sbjct: 16329919 cactctcccatcttcagtcataagcacagccccagcacccgcttttcctggatttccttt 16329860

                                    
Query: 556      tgaagcaccatcaaagtgaa 575
                 || |||||||| |||||||
Sbjct: 16329859 cgatgcaccatcgaagtgaa 16329840



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 159      agccatcgccacgctcctcaga 180
                ||||||||||||||||||||||
Sbjct: 16331084 agccatcgccacgctcctcaga 16331063



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 589      atattgttttgagacaggttgtgcatcaa 617
                ||||||||| |||| ||||||||||||||
Sbjct: 16328811 atattgtttcgagagaggttgtgcatcaa 16328783



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                                
Query: 197      agagtgatggctatgtttgcctggcgatcagcctcagagttccattcc 244
                ||||| || ||||||||||| |||||||| ||||| |  |||||||||
Sbjct: 16330967 agagtaatagctatgtttgcttggcgatctgcctcggcattccattcc 16330920
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                            
Query: 350      acctgataacagactagttgagagtcaccatatactttgattctcttgaatccaagcctg 409
                |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| |||| 
Sbjct: 16338386 acctgataacagactagttgagagtcgccatatactatgattttcttgaaaccatgccta 16338327

                                                                            
Query: 410      atggcatatttcaggcctaagataaggccccgatactcagcaacattattggtagcaaca 469
                || |||||| |||  |||||||| |||||||| || |||||||||||||||||| ||| |
Sbjct: 16338326 atagcatatctcaatcctaagatcaggccccggtattcagcaacattattggtaacaata 16338267

                                           
Query: 470      ccaagaccctcacggagtcgagatatc 496
                ||||||||||| || ||||||||||||
Sbjct: 16338266 ccaagaccctcgcgaagtcgagatatc 16338240



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                            
Query: 262      ctcaaaagagatgaagttctcttgaagttttctcacttctttgcacagttccatcatgtt 321
                |||||| |||| |||||| ||||  || ||||||||||| ||||||||||||||||||||
Sbjct: 16338879 ctcaaatgagacgaagttttctttgagctttctcacttccttgcacagttccatcatgtt 16338820

                                                
Query: 322      ctctttctttgcttgccatgtacctttcacct 353
                ||  ||||| | ||||||||||||||||||||
Sbjct: 16338819 ctggttcttcgtttgccatgtacctttcacct 16338788



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                            
Query: 496      cactcttccgtcttcagtcatcagtacagctccagcacctgattttcctgggtttccttt 555
                |||||| || ||||||||||| || ||||| |||||||| | ||||||||| ||||||||
Sbjct: 16338160 cactctcccatcttcagtcataagcacagccccagcacccgcttttcctggatttccttt 16338101

                                    
Query: 556      tgaagcaccatcaaagtgaa 575
                 || |||||||| |||||||
Sbjct: 16338100 cgatgcaccatcgaagtgaa 16338081



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 159      agccatcgccacgctcctcaga 180
                ||||||||||||||||||||||
Sbjct: 16339325 agccatcgccacgctcctcaga 16339304



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 589      atattgttttgagacaggttgtgcatcaa 617
                ||||||||| |||| ||||||||||||||
Sbjct: 16337052 atattgtttcgagagaggttgtgcatcaa 16337024



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                                
Query: 197      agagtgatggctatgtttgcctggcgatcagcctcagagttccattcc 244
                ||||| || ||||||||||| |||||||| ||||| |  |||||||||
Sbjct: 16339208 agagtaatagctatgtttgcttggcgatctgcctcggcattccattcc 16339161
to top
>ref|XM_480354.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1056

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 524 gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
           ||||||||||||| ||| || || |||||||| ||||||||||||||
Sbjct: 674 gctccagcacctgctttcccaggatttcctttagaagcaccatcaaa 628
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 524     gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
               ||||||||||||| ||| || || |||||||| ||||||||||||||
Sbjct: 4561683 gctccagcacctgctttcccaggatttcctttagaagcaccatcaaa 4561729
to top
>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_C08
          Length = 150300

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 524   gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
             ||||||||||||| ||| || || |||||||| ||||||||||||||
Sbjct: 85531 gctccagcacctgctttcccaggatttcctttagaagcaccatcaaa 85577
to top
>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0583B06
          Length = 134442

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 524    gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
              ||||||||||||| ||| || || |||||||| ||||||||||||||
Sbjct: 127573 gctccagcacctgctttcccaggatttcctttagaagcaccatcaaa 127619
to top
>ref|NM_111007.2| Arabidopsis thaliana nuclease/ nucleic acid binding / ribonuclease
           H AT3G01410 mRNA, complete cds
          Length = 1256

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 521 acagctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
           |||||||| ||||| |  || |||||||||||||| ||||||||||||||
Sbjct: 684 acagctcctgcaccagccttccctgggtttcctttagaagcaccatcaaa 635
to top
>gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC T13O15 genomic sequence,
             complete sequence
          Length = 86324

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 521   acagctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
             |||||||| ||||| |  || |||||||||||||| ||||||||||||||
Sbjct: 57268 acagctcctgcaccagccttccctgggtttcctttagaagcaccatcaaa 57317
to top
>gb|BT010430.1| Arabidopsis thaliana At3g01410 mRNA, complete cds
          Length = 885

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 521 acagctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
           |||||||| ||||| |  || |||||||||||||| ||||||||||||||
Sbjct: 524 acagctcctgcaccagccttccctgggtttcctttagaagcaccatcaaa 475
to top
>dbj|AK176396.1| Arabidopsis thaliana mRNA for putative RNase H, complete cds,
           clone: RAFL24-10-J05
          Length = 1367

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 521 acagctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
           |||||||| ||||| |  || |||||||||||||| ||||||||||||||
Sbjct: 702 acagctcctgcaccagccttccctgggtttcctttagaagcaccatcaaa 653
to top
>gb|BT017897.1| Zea mays clone EL01N0515G04.c mRNA sequence
          Length = 1433

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 524 gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
           ||||||||||| | ||| ||||| |||||||| || |||||||||||
Sbjct: 766 gctccagcaccggctttccctggatttcctttagaggcaccatcaaa 720
to top
>gb|AY104723.1| Zea mays PCO115255 mRNA sequence
          Length = 1053

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 524 gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 570
           ||||||||||| | ||| ||||| |||||||| || |||||||||||
Sbjct: 740 gctccagcaccggctttccctggatttcctttagaggcaccatcaaa 694
to top
>ref|XM_462905.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3789

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 364  tagttgagagtcaccatatac 384
            |||||||||||||||||||||
Sbjct: 2448 tagttgagagtcaccatatac 2428
to top
>gb|AC149223.2| Mus musculus BAC clone RP23-203K1 from chromosome 18, complete sequence
          Length = 202991

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 588    tatattgttttgagacaggtt 608
              |||||||||||||||||||||
Sbjct: 170992 tatattgttttgagacaggtt 171012
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 364      tagttgagagtcaccatatac 384
                |||||||||||||||||||||
Sbjct: 19897163 tagttgagagtcaccatatac 19897183
to top
>gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosome 18, complete
             sequence
          Length = 186798

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 588   tatattgttttgagacaggtt 608
             |||||||||||||||||||||
Sbjct: 72465 tatattgttttgagacaggtt 72485
to top
>gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete sequence
          Length = 112733

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 527   ccagcacctgattttcctgggtttccttttgaagcaccatc 567
             |||||||| | |||||| || ||||||||||| ||||||||
Sbjct: 29501 ccagcaccagcttttccaggatttccttttgacgcaccatc 29461
to top
>emb|AL121904.13|HSDJ410C9 Human DNA sequence from clone RP3-410C9 on chromosome 20 Contains two
             novel genes and two CpG islands, complete sequence
          Length = 109849

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 379   atatactttgattctcttgaa 399
             |||||||||||||||||||||
Sbjct: 58303 atatactttgattctcttgaa 58323
to top
>emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 on chromosome Xq26.2-27.2
              Contains a ras-related C3 botulinum toxin substrate 1 (rho
              family, small GTP binding protein Rac1) (RAC1) pseudogene
              (LOC286472) and a CpG island, complete sequence
          Length = 137111

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 534    ctgattttcctgggtttccttttga 558
              |||||||||||||||| ||||||||
Sbjct: 110891 ctgattttcctgggttgccttttga 110915
to top
>gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosome 18, complete sequence
          Length = 205629

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 588    tatattgttttgagacaggtt 608
              |||||||||||||||||||||
Sbjct: 196425 tatattgttttgagacaggtt 196405
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 364      tagttgagagtcaccatatac 384
                |||||||||||||||||||||
Sbjct: 19890191 tagttgagagtcaccatatac 19890211
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 586    catatattgttttgagacaggttgt 610
              ||||| |||||||||||||||||||
Sbjct: 534250 catatgttgttttgagacaggttgt 534226
to top
>gb|AC107425.6| Homo sapiens 3 BAC RP11-497L23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 130297

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   acagagaaccagttaaataca 35
            |||||||||||||||||||||
Sbjct: 4774 acagagaaccagttaaataca 4754
to top
>gb|AC005230.1|AC005230 Homo sapiens PAC clone RP5-1163L11 from 14q24.3, complete sequence
          Length = 112902

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 288   gttttctcacttctttgcaca 308
             |||||||||||||||||||||
Sbjct: 95880 gttttctcacttctttgcaca 95900
to top
>gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genomic sequence, complete
             sequence
          Length = 137297

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 364   tagttgagagtcaccatatac 384
             |||||||||||||||||||||
Sbjct: 49452 tagttgagagtcaccatatac 49472
to top
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0501G04
          Length = 156603

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 586   catatattgttttgagacaggttgt 610
             ||||| |||||||||||||||||||
Sbjct: 12303 catatgttgttttgagacaggttgt 12279
to top
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0017C12
          Length = 135356

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 586    catatattgttttgagacaggttgt 610
              ||||| |||||||||||||||||||
Sbjct: 130491 catatgttgttttgagacaggttgt 130467
to top
>emb|AL445903.3|CNS07EEU Human chromosome 14 DNA sequence BAC R-164G17 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145556

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 288  gttttctcacttctttgcaca 308
            |||||||||||||||||||||
Sbjct: 7474 gttttctcacttctttgcaca 7494
to top
>gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, complete sequence
          Length = 186243

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 592    ttgttttgagacaggttgtgc 612
              |||||||||||||||||||||
Sbjct: 112321 ttgttttgagacaggttgtgc 112341
to top
>gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, complete sequence
          Length = 212734

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 592    ttgttttgagacaggttgtgc 612
              |||||||||||||||||||||
Sbjct: 107235 ttgttttgagacaggttgtgc 107215
to top
>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 187484

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    ctcaaaagagatgaagttct 281
              ||||||||||||||||||||
Sbjct: 163130 ctcaaaagagatgaagttct 163149
to top
>gb|AC147243.2| Mus musculus BAC clone RP23-444P22 from chromosome 6, complete sequence
          Length = 181025

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     gttaaatacaagaaaatgga 45
              ||||||||||||||||||||
Sbjct: 145531 gttaaatacaagaaaatgga 145512
to top
>gb|AC125175.4| Mus musculus BAC clone RP24-572I8 from chromosome 6, complete sequence
          Length = 167991

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    gttaaatacaagaaaatgga 45
             ||||||||||||||||||||
Sbjct: 16386 gttaaatacaagaaaatgga 16367
to top
>emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in linkage group 3, complete
              sequence
          Length = 168285

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 573    gaacaacacataccatatat 592
              ||||||||||||||||||||
Sbjct: 112045 gaacaacacataccatatat 112026
to top
>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence
          Length = 151183

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ttccatcatgttctctttct 329
             ||||||||||||||||||||
Sbjct: 57769 ttccatcatgttctctttct 57750
to top
>ref|XM_541477.2| PREDICTED: Canis familiaris similar to leucine rich repeat
           containing 4B (LOC484361), mRNA
          Length = 2620

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 tcatgttctctttctttgct 334
           ||||||||||||||||||||
Sbjct: 236 tcatgttctctttctttgct 217
to top
>ref|XM_662079.1| Cryptosporidium hominis TU502 cytoskeletal protein (Chro.20307)
            partial mRNA
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  tgaagttctcttgaagtttt 292
            ||||||||||||||||||||
Sbjct: 1606 tgaagttctcttgaagtttt 1587
to top
>emb|AL356312.12| Human DNA sequence from clone RP11-172A19 on chromosome 13, complete
            sequence
          Length = 60683

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 103  ttaactaaatacatagactagtta 126
            ||||||||||||||| ||||||||
Sbjct: 1860 ttaactaaatacatatactagtta 1837
to top
>emb|AL645587.9| Mouse DNA sequence from clone RP23-171O15 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 150986

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    tagaatactgttaactaaat 112
             ||||||||||||||||||||
Sbjct: 75503 tagaatactgttaactaaat 75522
to top
>gb|AC148527.20| Medicago truncatula clone mth2-49g13, complete sequence
          Length = 107439

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    taaatacaagaaaatggaca 47
             ||||||||||||||||||||
Sbjct: 69125 taaatacaagaaaatggaca 69106
to top
>gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, complete sequence
          Length = 197483

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    catgttctctttctttgctt 335
              ||||||||||||||||||||
Sbjct: 102373 catgttctctttctttgctt 102392
to top
>emb|BX677663.6| Zebrafish DNA sequence from clone DKEY-76N12 in linkage group 2, complete
              sequence
          Length = 143503

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 279    tctcttgaagttttctcacttctt 302
              ||||||||| ||||||||||||||
Sbjct: 121353 tctcttgaaattttctcacttctt 121330
to top
>ref|XM_626490.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_2930),
            partial mRNA
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  tgaagttctcttgaagtttt 292
            ||||||||||||||||||||
Sbjct: 1606 tgaagttctcttgaagtttt 1587
to top
>emb|AL928869.11| Mouse DNA sequence from clone RP23-393F9 on chromosome 2, complete
             sequence
          Length = 97022

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   tatattgttttgagacaggt 607
             ||||||||||||||||||||
Sbjct: 52247 tatattgttttgagacaggt 52228
to top
>gb|AC110999.4| Homo sapiens BAC clone RP13-588I20 from 4, complete sequence
          Length = 114594

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    agaatactgttaactaaata 113
             ||||||||||||||||||||
Sbjct: 14082 agaatactgttaactaaata 14101
to top
>gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 198170

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   aagttctcttgaagttttct 294
             ||||||||||||||||||||
Sbjct: 33967 aagttctcttgaagttttct 33948
to top
>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete sequence
          Length = 237233

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   tgttctctttctttgcttgc 337
             ||||||||||||||||||||
Sbjct: 13539 tgttctctttctttgcttgc 13558
to top
>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   tgttctctttctttgcttgc 337
             ||||||||||||||||||||
Sbjct: 24355 tgttctctttctttgcttgc 24336
to top
>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5,
             complete sequence
          Length = 178961

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   catatactttgattctcttg 397
             ||||||||||||||||||||
Sbjct: 39418 catatactttgattctcttg 39437
to top
>gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B sequence
          Length = 110434

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   catgttctctttctttgctt 335
             ||||||||||||||||||||
Sbjct: 89444 catgttctctttctttgctt 89425
to top
>gb|AY609577.1| Sus scrofa clone Clu_194599.scr.msk.p1.Contig2, mRNA sequence
          Length = 1043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 305 cacagttccatcatgttctctttctttg 332
           |||||||||||||||||  |||||||||
Sbjct: 851 cacagttccatcatgtttactttctttg 824
to top
>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence
          Length = 198160

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   ctcaaaagagatgaagttct 281
             ||||||||||||||||||||
Sbjct: 17919 ctcaaaagagatgaagttct 17938
to top
>emb|AL672274.7| Mouse DNA sequence from clone RP23-351G20 on chromosome X, complete
              sequence
          Length = 189982

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 589    atattgttttgagacaggtt 608
              ||||||||||||||||||||
Sbjct: 139103 atattgttttgagacaggtt 139084
to top
>emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chromosome X, complete
             sequence
          Length = 146105

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   ttgttttgagacaggttgtg 611
             ||||||||||||||||||||
Sbjct: 55972 ttgttttgagacaggttgtg 55991


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,035,498
Number of Sequences: 3902068
Number of extensions: 7035498
Number of successful extensions: 166521
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 166118
Number of HSP's gapped (non-prelim): 399
length of query: 666
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 643
effective length of database: 17,143,297,704
effective search space: 11023140423672
effective search space used: 11023140423672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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