ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62n16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UTR4_YEAST (P32626) Protein UTR4 (Unknown transcript 4 protein) 64 4e-10
2G6PD_PICJA (P11410) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.... 31 3.3
3ILVC_DESDG (Q30ZD3) Ketol-acid reductoisomerase (EC 1.1.1.86) (A... 31 3.3
4ILVC_DESVH (Q72CA6) Ketol-acid reductoisomerase (EC 1.1.1.86) (A... 30 4.3
5PGKC_RALEU (P50319) Phosphoglycerate kinase, chromosomal (EC 2.7... 30 5.6
6PGKP_RALEU (P50320) Phosphoglycerate kinase, plasmid (EC 2.7.2.3) 30 5.6
7ILVC_RHOBA (Q7UKY0) Ketol-acid reductoisomerase (EC 1.1.1.86) (A... 30 7.3

>UTR4_YEAST (P32626) Protein UTR4 (Unknown transcript 4 protein)|
          Length = 241

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 8/103 (7%)
 Frame = -2

Query: 518 EAQRLXFG-----NTAAHG--DLRPYLSAFFDTNVGGKKL-SRSYYEIWQTLGVDSPSQI 363
           +AQ+L FG     N  AH   DL  Y+  +FD N  GKK  ++SY  I + +G  + S++
Sbjct: 137 KAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTSGKKTETQSYANILRDIGAKA-SEV 195

Query: 362 LFLTDVYQEATAARDAGLEVLISIRPGNAPLPEDHGFQTITSF 234
           LFL+D   E  AA   G+   ++ RPGNAP+P+   +Q   +F
Sbjct: 196 LFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQVYKNF 238



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>G6PD_PICJA (P11410) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)|
          Length = 495

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 235 NDVMVWKP*SSGSGAFPGLIDISTSRPASLAAV-ASW*TSVRKSIWDGL 378
           NDV++ +   S  G  PG +D ST +P S A   A++  ++    WDG+
Sbjct: 279 NDVLLGQYGKSEDGTKPGYLDDSTVKPNSKAVTYAAFRVNIHNERWDGV 327



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>ILVC_DESDG (Q30ZD3) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 329

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -2

Query: 344 YQEATAARDAGLEVLISIRPG--NAPLPEDHGFQTITS 237
           +  A   RD+G+ V++  RPG  N  L ++HGFQ +++
Sbjct: 29  HAHAQNLRDSGVNVIVGQRPGGPNFELAKEHGFQPLSA 66



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>ILVC_DESVH (Q72CA6) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 331

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -2

Query: 344 YQEATAARDAGLEVLISIRPG--NAPLPEDHGFQTITS 237
           +  A   RD+G+ V++  RPG  N  L ++HGF+ +++
Sbjct: 29  HAHAQNLRDSGISVIVGQRPGGANYALAKEHGFEPVSA 66



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>PGKC_RALEU (P50319) Phosphoglycerate kinase, chromosomal (EC 2.7.2.3)|
          Length = 413

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 436 LEARNCLXVTTRSGRPSASTARPRYSSSPMSTKKPPLQGMQV 311
           L+A   + VT+  GRP      PR+S +P+  +   L G QV
Sbjct: 68  LQAGAAVMVTSHLGRPQEGAPDPRHSLAPVGRRLSELLGRQV 109



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>PGKP_RALEU (P50320) Phosphoglycerate kinase, plasmid (EC 2.7.2.3)|
          Length = 412

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 436 LEARNCLXVTTRSGRPSASTARPRYSSSPMSTKKPPLQGMQV 311
           L+A   + VT+  GRP      PR+S +P+  +   L G QV
Sbjct: 67  LQAGAAVMVTSHLGRPQEGAPDPRHSLAPVGRRLSELLGRQV 108



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>ILVC_RHOBA (Q7UKY0) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 334

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 344 YQEATAARDAGLEVLISIRPGNA--PLPEDHGFQTIT 240
           + +A   RD+G EV+I  RPG+A   L   HGF+ ++
Sbjct: 31  HAQAQNLRDSGCEVIIGQRPGSANYDLAVSHGFEPMS 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,694,237
Number of Sequences: 219361
Number of extensions: 1393932
Number of successful extensions: 4371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4369
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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