ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUAA_NITWN (Q3SQP4) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 33 0.42
2TGT_LACLA (Q9CJ54) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)... 31 2.7
3FRS3_MOUSE (Q91WJ0) Fibroblast growth factor receptor substrate ... 30 4.6
4PER70_ARATH (Q9FMI7) Peroxidase 70 precursor (EC 1.11.1.7) (Atpe... 29 7.9

>GUAA_NITWN (Q3SQP4) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 535

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 507 RSAYSMIDTCMIVSGVWHRGGFDNSWVLQGKGIDR 403
           R+A  +ID C +  GVW +GG  + W+  G  + +
Sbjct: 125 RAAIEVIDACALFDGVWEKGGTYDVWMSHGDRVTK 159



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>TGT_LACLA (Q9CJ54) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 382

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -2

Query: 317 GALDSLLVGLVRPPD*MVCV----IARSGHIIKHIGAVTNRH 204
           GA DSL+ G++R  D   CV    IAR+G ++ H G V  R+
Sbjct: 254 GAPDSLIDGVIRGVDMFDCVLPTRIARNGTLMTHFGRVNIRN 295



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>FRS3_MOUSE (Q91WJ0) Fibroblast growth factor receptor substrate 3 (FGFR|
           substrate 3) (FRS2-beta)
          Length = 491

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 282 PHQANQQRVESTGWSSNPQHAPHTPALESNYGIFPGPIFKSD 407
           P Q N  +VE  GW +     P  P++    G  P P+  SD
Sbjct: 411 PRQLNYIQVELKGWGTARPKGPQNPSVSGAPGPTPHPVRSSD 452



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>PER70_ARATH (Q9FMI7) Peroxidase 70 precursor (EC 1.11.1.7) (Atperox P70)|
           (ATP45)
          Length = 330

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +3

Query: 216 HSTYMFDYVP*PRNNTYHLIWWPHQANQQRVESTGWSSNPQHAPHTPALESNYGIFPGPI 395
           ++T+  +++P PR   Y    W  ++  + V  + + +NP +AP    +  +     G  
Sbjct: 23  NATHTNNFLPRPRTGYYGSACWNVESIVRSVVESNYLANPANAPGILRMHFHDCFVQG-- 80

Query: 396 FKSDQCLYLAGPNYYRS 446
              D  + LAGPN  R+
Sbjct: 81  --CDASVLLAGPNSERT 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,412,599
Number of Sequences: 219361
Number of extensions: 2185862
Number of successful extensions: 4476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4476
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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