ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62n12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLBA_EMENI (P38093) Developmental regulator flbA 33 0.58
2TERT_ORYSA (Q8LKW0) Telomerase reverse transcriptase (EC 2.7.7.4... 33 1.00
3DNAE2_XANCP (Q8PBL8) Error-prone DNA polymerase (EC 2.7.7.7) 33 1.00
4DNAE2_XANC8 (Q4URY1) Error-prone DNA polymerase (EC 2.7.7.7) 33 1.00
5POLG_EC05N (Q9YLJ1) Genome polyprotein [Contains: Coat protein V... 31 3.8
6GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa ze... 28 6.9
7MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycopro... 30 8.4
8DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precur... 30 8.4
9DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] prec... 30 8.4
10DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC ... 30 8.4

>FLBA_EMENI (P38093) Developmental regulator flbA|
          Length = 719

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 79  HTTTEYKHDHTVPTASSIQSLA*LWFHPLQNVAEATDPSFILATCTTNSSSCPH--ARDI 252
           H     K+DHT  +  +I +L  L F     + +  DPS I+ T TT + S     AR +
Sbjct: 249 HRVRFTKYDHTFTSEEAINNLGSLKFSQSNRMPDPKDPSRIVTTTTTTTFSMAKEMARSV 308

Query: 253 C 255
           C
Sbjct: 309 C 309



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>TERT_ORYSA (Q8LKW0) Telomerase reverse transcriptase (EC 2.7.7.49) (OsTERT)|
          Length = 1261

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +3

Query: 366 QGCLVHHFPEAARLRQSCSSFSLELRLAGTRARRTPAWQQHSVRRRTCSPGSWPRRPTQS 545
           +GC    FP   R  + C+ ++   R    + +R  +WQ+ S +++ CS        + +
Sbjct: 278 EGCNCPKFPSDGRSGECCNCYTHNTR----KRKRLYSWQRRSKKKQVCSVDE-----SSA 328

Query: 546 QWSQMN 563
           +WS++N
Sbjct: 329 EWSKLN 334



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>DNAE2_XANCP (Q8PBL8) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1082

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 25/69 (36%), Positives = 34/69 (49%)
 Frame = +1

Query: 277  QEPSITTSCHEQLIEAPEIPTACPILMVKSRDVLCTISLRQHGYAKVVPHSLWSSALQVR 456
            + P +  S  E+ +E P  P A   ++   R V   +SLRQH  A + P  L    L +R
Sbjct: 925  RRPLLPGSPAERAVELPA-PRAGEEILADYRAV--GLSLRQHPMALLRPQMLQRRILGLR 981

Query: 457  GLAVRRHGS 483
             L  RRHGS
Sbjct: 982  ELQARRHGS 990



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>DNAE2_XANC8 (Q4URY1) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1082

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 25/69 (36%), Positives = 34/69 (49%)
 Frame = +1

Query: 277  QEPSITTSCHEQLIEAPEIPTACPILMVKSRDVLCTISLRQHGYAKVVPHSLWSSALQVR 456
            + P +  S  E+ +E P  P A   ++   R V   +SLRQH  A + P  L    L +R
Sbjct: 925  RRPLLPGSPAERAVELPA-PRAGEEILADYRAV--GLSLRQHPMALLRPQMLQRRILGLR 981

Query: 457  GLAVRRHGS 483
             L  RRHGS
Sbjct: 982  ELQARRHGS 990



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>POLG_EC05N (Q9YLJ1) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2195

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = -1

Query: 639 DSLLPVKHXGPTEAFGMNMLSDQSSNSFGSTDFGWDDEAMTPDYTSVFVPSAAAMPAYGE 460
           ++LL   H        +N   D +SNS    DF  D    T     + + S   MPA   
Sbjct: 13  ETLLEAAHGATINYTNINYYKDAASNSANRQDFSQDPGKFTEPVKDLMIKS---MPALNS 69

Query: 459 PAYLQGGAPKRMRN 418
           P+  + G   R+R+
Sbjct: 70  PSAEECGFSDRVRS 83



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>GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa zein)|
           (Alcohol-soluble reduced glutelin) (ASG) (Zein ZC2)
          Length = 223

 Score = 27.7 bits (60), Expect(2) = 6.9
 Identities = 24/96 (25%), Positives = 32/96 (33%)
 Frame = +3

Query: 294 HQLP*TAHRGSRDPHCLPHPHGQKQGCLVHHFPEAARLRQSCSSFSLELRLAGTRARRTP 473
           H  P   H  ++ P   PHP      C   H P   +L+ +C   S  +           
Sbjct: 77  HLPPPPCHYPTQPPRPQPHPQPHPCPCQQPH-PSPCQLQGTCGVGSTPI----------- 124

Query: 474 AWQQHSVRRRTCSPGSWPRRPTQSQWSQMNCCSGQR 581
             Q     R  CSP + P    Q Q  +  CC   R
Sbjct: 125 LGQCVEFLRHQCSPTATPYCSPQCQSLRQQCCQQLR 160



 Score = 20.8 bits (42), Expect(2) = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 182 PPILLSSWPHAPPILHL 232
           PP+ L    H PP +HL
Sbjct: 62  PPVHLPPPVHVPPPVHL 78



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>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)|
          Length = 1316

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 230 DEELVVHVAKMKEGSVASATFCSG*NHSYAKDCMLLAVGTVWSCLYSVVVCRLYIMIGCM 51
           D  +V   A  KE    S +F    + +   DC+L+A+G++ +C++   V   +I  G +
Sbjct: 6   DPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKL 65

Query: 50  L 48
           +
Sbjct: 66  I 66



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>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC|
           1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase)
           (Dihydrothymine dehydrogenase)
          Length = 1025

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 281 SCQCGLRTAQMSLACGQDEELVVHVAK 201
           SC  G+    M LACGQD ELV ++ +
Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696



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>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC|
           1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase)
           (Dihydrothymine dehydrogenase)
          Length = 1025

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 281 SCQCGLRTAQMSLACGQDEELVVHVAK 201
           SC  G+    M LACGQD ELV ++ +
Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696



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>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)|
           (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine
           dehydrogenase)
          Length = 1025

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 281 SCQCGLRTAQMSLACGQDEELVVHVAK 201
           SC  G+    M LACGQD ELV ++ +
Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,481,314
Number of Sequences: 219361
Number of extensions: 2540017
Number of successful extensions: 6871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6858
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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