ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah62n12 |
|---|---|
| Clone Library Name | barley_pub |
>FLBA_EMENI (P38093) Developmental regulator flbA| Length = 719 Score = 33.5 bits (75), Expect = 0.58 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +1 Query: 79 HTTTEYKHDHTVPTASSIQSLA*LWFHPLQNVAEATDPSFILATCTTNSSSCPH--ARDI 252 H K+DHT + +I +L L F + + DPS I+ T TT + S AR + Sbjct: 249 HRVRFTKYDHTFTSEEAINNLGSLKFSQSNRMPDPKDPSRIVTTTTTTTFSMAKEMARSV 308 Query: 253 C 255 C Sbjct: 309 C 309
>TERT_ORYSA (Q8LKW0) Telomerase reverse transcriptase (EC 2.7.7.49) (OsTERT)| Length = 1261 Score = 32.7 bits (73), Expect = 1.00 Identities = 16/66 (24%), Positives = 33/66 (50%) Frame = +3 Query: 366 QGCLVHHFPEAARLRQSCSSFSLELRLAGTRARRTPAWQQHSVRRRTCSPGSWPRRPTQS 545 +GC FP R + C+ ++ R + +R +WQ+ S +++ CS + + Sbjct: 278 EGCNCPKFPSDGRSGECCNCYTHNTR----KRKRLYSWQRRSKKKQVCSVDE-----SSA 328 Query: 546 QWSQMN 563 +WS++N Sbjct: 329 EWSKLN 334
>DNAE2_XANCP (Q8PBL8) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1082 Score = 32.7 bits (73), Expect = 1.00 Identities = 25/69 (36%), Positives = 34/69 (49%) Frame = +1 Query: 277 QEPSITTSCHEQLIEAPEIPTACPILMVKSRDVLCTISLRQHGYAKVVPHSLWSSALQVR 456 + P + S E+ +E P P A ++ R V +SLRQH A + P L L +R Sbjct: 925 RRPLLPGSPAERAVELPA-PRAGEEILADYRAV--GLSLRQHPMALLRPQMLQRRILGLR 981 Query: 457 GLAVRRHGS 483 L RRHGS Sbjct: 982 ELQARRHGS 990
>DNAE2_XANC8 (Q4URY1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1082 Score = 32.7 bits (73), Expect = 1.00 Identities = 25/69 (36%), Positives = 34/69 (49%) Frame = +1 Query: 277 QEPSITTSCHEQLIEAPEIPTACPILMVKSRDVLCTISLRQHGYAKVVPHSLWSSALQVR 456 + P + S E+ +E P P A ++ R V +SLRQH A + P L L +R Sbjct: 925 RRPLLPGSPAERAVELPA-PRAGEEILADYRAV--GLSLRQHPMALLRPQMLQRRILGLR 981 Query: 457 GLAVRRHGS 483 L RRHGS Sbjct: 982 ELQARRHGS 990
>POLG_EC05N (Q9YLJ1) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2195 Score = 30.8 bits (68), Expect = 3.8 Identities = 20/74 (27%), Positives = 30/74 (40%) Frame = -1 Query: 639 DSLLPVKHXGPTEAFGMNMLSDQSSNSFGSTDFGWDDEAMTPDYTSVFVPSAAAMPAYGE 460 ++LL H +N D +SNS DF D T + + S MPA Sbjct: 13 ETLLEAAHGATINYTNINYYKDAASNSANRQDFSQDPGKFTEPVKDLMIKS---MPALNS 69 Query: 459 PAYLQGGAPKRMRN 418 P+ + G R+R+ Sbjct: 70 PSAEECGFSDRVRS 83
>GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa zein)| (Alcohol-soluble reduced glutelin) (ASG) (Zein ZC2) Length = 223 Score = 27.7 bits (60), Expect(2) = 6.9 Identities = 24/96 (25%), Positives = 32/96 (33%) Frame = +3 Query: 294 HQLP*TAHRGSRDPHCLPHPHGQKQGCLVHHFPEAARLRQSCSSFSLELRLAGTRARRTP 473 H P H ++ P PHP C H P +L+ +C S + Sbjct: 77 HLPPPPCHYPTQPPRPQPHPQPHPCPCQQPH-PSPCQLQGTCGVGSTPI----------- 124 Query: 474 AWQQHSVRRRTCSPGSWPRRPTQSQWSQMNCCSGQR 581 Q R CSP + P Q Q + CC R Sbjct: 125 LGQCVEFLRHQCSPTATPYCSPQCQSLRQQCCQQLR 160 Score = 20.8 bits (42), Expect(2) = 6.9 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = +2 Query: 182 PPILLSSWPHAPPILHL 232 PP+ L H PP +HL Sbjct: 62 PPVHLPPPVHVPPPVHL 78
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 29.6 bits (65), Expect = 8.4 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -2 Query: 230 DEELVVHVAKMKEGSVASATFCSG*NHSYAKDCMLLAVGTVWSCLYSVVVCRLYIMIGCM 51 D +V A KE S +F + + DC+L+A+G++ +C++ V +I G + Sbjct: 6 DPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKL 65 Query: 50 L 48 + Sbjct: 66 I 66
>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 8.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 281 SCQCGLRTAQMSLACGQDEELVVHVAK 201 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 8.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 281 SCQCGLRTAQMSLACGQDEELVVHVAK 201 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)| (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 8.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 281 SCQCGLRTAQMSLACGQDEELVVHVAK 201 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,481,314 Number of Sequences: 219361 Number of extensions: 2540017 Number of successful extensions: 6871 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 6535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6858 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
