Clone Name
rbah62n12
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full...
492
e-136
2 emb|AJ575224.1|OSA575224 Oryza sativa (japonica cultivar-group) ...
98
4e-17
3 gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative E...
98
4e-17
4 gb|AF364176.1| Oryza sativa putative EREBP-type transcription fa...
98
4e-17
5 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
98
4e-17
6 dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D...
98
4e-17
7 dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clon...
98
4e-17
8 dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clon...
98
4e-17
9 dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clon...
98
4e-17
10 gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ...
90
1e-14
11 gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, comple...
46
0.15
12 emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-6...
46
0.15
13 emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-7...
46
0.15
14 gb|AF061054.1|AF061054 Homo sapiens estrogen receptor beta 4 spl...
46
0.15
15 gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, comp...
44
0.58
16 gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, com...
44
0.58
17 gb|AY105702.1| Zea mays PCO125609 mRNA sequence
44
0.58
18 gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, co...
42
2.3
19 gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, co...
42
2.3
20 gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ...
42
2.3
21 emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on ch...
42
2.3
22 emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr...
42
2.3
23 gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone...
42
2.3
24 emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr...
42
2.3
25 gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, com...
40
9.1
26 gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com...
40
9.1
27 emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chro...
40
9.1
28 gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosom...
40
9.1
29 gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, com...
40
9.1
30 emb|AL022101.1|HS845O24 Human DNA sequence from clone RP5-845O24...
40
9.1
31 emb|Z18946.1|MLCGA Mycobacteriophage L5 complete genome
40
9.1
32 emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment ...
40
9.1
33 emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chr...
40
9.1
34 gb|AC183109.2| Pan troglodytes BAC clone CH251-317D18 from chrom...
40
9.1
35 gb|AC116427.1| Homo sapiens chromosome 5 clone CTD-2316N20, comp...
40
9.1
36 gb|AC139493.3| Homo sapiens chromosome 5 clone RP11-844P9, compl...
40
9.1
37 gb|AC008469.4|AC008469 Homo sapiens chromosome 5 clone CTC-365H2...
40
9.1
38 emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chr...
40
9.1
>gb| BT009027.1 | Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA
sequence
Length = 1612
Score = 492 bits (248), Expect = e-136
Identities = 295/311 (94%)
Strand = Plus / Minus
Query: 352 ctcatggtcaaaagcagggatgtcttgtgcaccatttccctgaggcagcacggctacgcc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1160 ctcatggtcaaaagcagggatgtcttgtgcaccatttccctgaggcagcacggctacacc 1101
Query: 412 aaagttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgc 471
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 1100 aaagttgttcctcattctctttggagctccaccttgcaggtaagcgggctcgccgtatgc 1041
Query: 472 cggcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtc 531
|||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 1040 cggcatggcagcagcattcggaacgaagacggatgtgtagtctggggtcatggcctcgtc 981
Query: 532 gtcccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 gtcccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcat 921
Query: 592 cccgaatgcctcggtggggccaangtgtttcactggaagaagggaatccacactgtcagc 651
|||||||| ||| ||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct: 920 cccgaatgtctcagtgggcacaagaggtttcactggaagaagggaatccacactttcagc 861
Query: 652 tggctttgcag 662
|||||||||||
Sbjct: 860 tggctttgcag 850
Score = 323 bits (163), Expect = 4e-85
Identities = 290/329 (88%), Gaps = 15/329 (4%)
Strand = Plus / Minus
Query: 29 tttattaaactccagcctccaacatgcacccaatcattatatagagacgacatacaacaa 88
||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||
Sbjct: 1554 tttattaaactccagtctccaacatgcacccaatcat-----agaggcgatatacaacaa 1500
Query: 89 cagaata----taaacatgaccatacggttcccactgctagcagcatacagtctttagca 144
|| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 1499 caaaatacttataaacatgac-atacggttcc-actgctagcagcatacagtctttagca 1442
Query: 145 taactatggtttcatccgctacagaacgtagcagaagccaccgatccttctttcatcttg 204
|| ||| ||||| ||||||||| | | || |||| || ||| ||||||| ||| ||
Sbjct: 1441 tagctagggtttgatccgctaccaagcataacagatgcaacctatccttc----atcctg 1386
Query: 205 gccacatgcaccaccaattcttcatcttgcccacatgcaagggacatttgtgctgtccgc 264
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 1385 gccacatgcaccaccacttcttcatcttggccacatgcaagggacatttgtgctatccgc 1326
Query: 265 agaccacattgacaagaaccatcaataaccaccagctgccatgaacagctcatcgaggct 324
|||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 1325 agaccacactgacaagaaccatcaataaccaccagccgccatgaagagctcatcaaggct 1266
Query: 325 ccagagatccccactgcttgccccatcct 353
|||||||||||||||||||||||| ||||
Sbjct: 1265 ccagagatccccactgcttgccccgtcct 1237
>emb| AJ575224.1 |OSA575224 Oryza sativa (japonica cultivar-group) partial mRNA for EREBP-1
protein
Length = 585
Score = 97.6 bits (49), Expect = 4e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 505 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 446
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || |||||||| || |||||||| ||||||| || || || |
Sbjct: 445 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 389
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 388 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 329
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 328 cgaatgtctcagtgg 314
>gb| DQ417199.1 | Oryza sativa (japonica cultivar-group) putative EREBP transcription
factor (EREBP) mRNA, complete cds
Length = 1445
Score = 97.6 bits (49), Expect = 4e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 978 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 919
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || |||||||| || |||||||| ||||||| || || || |
Sbjct: 918 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 862
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 861 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 802
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 801 cgaatgtctcagtgg 787
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagctcatcgaggctccaga 329
||||||||||||||| ||||||||| ||||||||||
Sbjct: 1188 caccagctgccatgagcagctcatcaaggctccaga 1153
>gb| AF364176.1 | Oryza sativa putative EREBP-type transcription factor mRNA, complete
cds
Length = 1584
Score = 97.6 bits (49), Expect = 4e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 1052 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 993
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || |||||||| || |||||||| ||||||| || || || |
Sbjct: 992 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 936
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 935 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 876
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 875 cgaatgtctcagtgg 861
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagctcatcgaggctccaga 329
||||||||||||||| ||||||||| ||||||||||
Sbjct: 1262 caccagctgccatgagcagctcatcaaggctccaga 1227
>dbj| AP008215.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 97.6 bits (49), Expect = 4e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 15907376 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 15907317
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || |||||||| || |||||||| ||||||| || || || |
Sbjct: 15907316 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 15907260
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 15907259 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 15907200
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 15907199 cgaatgtctcagtgg 15907185
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagctcatcgaggctccaga 329
||||||||||||||| ||||||||| ||||||||||
Sbjct: 15907586 caccagctgccatgagcagctcatcaaggctccaga 15907551
>dbj| AP005551.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1081_G10
Length = 107955
Score = 97.6 bits (49), Expect = 4e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 70502 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 70443
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || |||||||| || |||||||| ||||||| || || || |
Sbjct: 70442 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 70386
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 70385 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 70326
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 70325 cgaatgtctcagtgg 70311
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagctcatcgaggctccaga 329
||||||||||||||| ||||||||| ||||||||||
Sbjct: 70712 caccagctgccatgagcagctcatcaaggctccaga 70677
>dbj| AK111690.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023008G03, full
insert sequence
Length = 1603
Score = 97.6 bits (49), Expect = 4e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 1082 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 1023
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || |||||||| || |||||||| ||||||| || || || |
Sbjct: 1022 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 966
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 965 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 906
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 905 cgaatgtctcagtgg 891
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagctcatcgaggctccaga 329
||||||||||||||| ||||||||| ||||||||||
Sbjct: 1292 caccagctgccatgagcagctcatcaaggctccaga 1257
>dbj| AK104576.1 | Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A07, full
insert sequence
Length = 1596
Score = 97.6 bits (49), Expect = 4e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 1076 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 1017
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || |||||||| || |||||||| ||||||| || || || |
Sbjct: 1016 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 960
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 959 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 900
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 899 cgaatgtctcagtgg 885
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagctcatcgaggctccaga 329
||||||||||||||| ||||||||| ||||||||||
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccaga 1251
>dbj| AK104723.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B05, full
insert sequence
Length = 1596
Score = 97.6 bits (49), Expect = 4e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 1076 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 1017
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || |||||||| || |||||||| ||||||| || || || |
Sbjct: 1016 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 960
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 959 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 900
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 899 cgaatgtctcagtgg 885
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagctcatcgaggctccaga 329
||||||||||||||| ||||||||| ||||||||||
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccaga 1251
>gb| AY831392.1 | Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional
factor 1 (BIERF1) mRNA, complete cds
Length = 1613
Score = 89.7 bits (45), Expect = 1e-14
Identities = 158/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 414 agttgttcctcattctctttggagctccgccttgcaggtacgcgggctcgccgtacgccg 473
|||||||||||||||||||||| ||||| ||| |||||| || || || || || || |
Sbjct: 1001 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 942
Query: 474 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 533
||||||||||| | || || ||||| || |||||||| ||||||| || || || |
Sbjct: 941 gcatggcagcatta---ggaacaaagactgaagtgtagtctggggtcagggtgtcatcct 885
Query: 534 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcatcc 593
|||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 884 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 825
Query: 594 cgaatgcctcggtgg 608
|||||| ||| ||||
Sbjct: 824 cgaatgtctcagtgg 810
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagctcatcgaggctccaga 329
||||||||||||||| ||||||||| ||||||||||
Sbjct: 1211 caccagctgccatgagcagctcatcaaggctccaga 1176
>gb| AF215937.1 |AF215937 Homo sapiens 3pv2 and 5p152 genes, complete cds, complete sequence
Length = 143340
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 231 ttgcccacatgcaagggacattt 253
|||||||||||||||||||||||
Sbjct: 58727 ttgcccacatgcaagggacattt 58749
>emb| AL355094.3 |CNS05TCD Human chromosome 14 DNA sequence BAC R-676P5 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 170273
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 231 ttgcccacatgcaagggacattt 253
|||||||||||||||||||||||
Sbjct: 4156 ttgcccacatgcaagggacattt 4134
>emb| AL161756.6 |CNS01RHJ Human chromosome 14 DNA sequence BAC R-712C19 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 176257
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 231 ttgcccacatgcaagggacattt 253
|||||||||||||||||||||||
Sbjct: 148513 ttgcccacatgcaagggacattt 148491
>gb| AF061054.1 |AF061054 Homo sapiens estrogen receptor beta 4 splice variant mRNA, partial
cds
Length = 659
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 231 ttgcccacatgcaagggacattt 253
|||||||||||||||||||||||
Sbjct: 262 ttgcccacatgcaagggacattt 240
>gb| AC158310.3 | Mus musculus chromosome 5, clone RP23-106N8, complete sequence
Length = 218714
Score = 44.1 bits (22), Expect = 0.58
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 ctacagaacgtagcagaagcca 184
||||||||||||||||||||||
Sbjct: 119408 ctacagaacgtagcagaagcca 119429
>gb| AC105987.21 | Mus musculus chromosome 5, clone RP24-446I1, complete sequence
Length = 192043
Score = 44.1 bits (22), Expect = 0.58
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 163 ctacagaacgtagcagaagcca 184
||||||||||||||||||||||
Sbjct: 145261 ctacagaacgtagcagaagcca 145240
>gb| AY105702.1 | Zea mays PCO125609 mRNA sequence
Length = 1889
Score = 44.1 bits (22), Expect = 0.58
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 304 catgaacagctcatcgaggctccagagatccccactgcttgccccatcct 353
||||| |||||| ||||||||||||| |||||| ||| ||||||||||
Sbjct: 1510 catgagcagctcgtcgaggctccagatatccccggcgctcgccccatcct 1461
Score = 44.1 bits (22), Expect = 0.58
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 420 tcctcattctctttggagctccgccttgca 449
||||||||||||| || |||||||||||||
Sbjct: 1286 tcctcattctcttcggcgctccgccttgca 1257
>gb| AC126424.12 | Mus musculus chromosome 17, clone RP23-19K10, complete sequence
Length = 182696
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 381 caccatttccctgaggcagca 401
|||||||||||||||||||||
Sbjct: 19989 caccatttccctgaggcagca 19969
>gb| AC011944.12 | Homo sapiens chromosome 15, clone RP11-16K12, complete sequence
Length = 166309
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 ccttctttcatcttggccaca 210
|||||||||||||||||||||
Sbjct: 7431 ccttctttcatcttggccaca 7451
>gb| AC087890.18 | Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
Sequence, complete sequence
Length = 194881
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 296 ccagctgccatgaacagctca 316
|||||||||||||||||||||
Sbjct: 180890 ccagctgccatgaacagctca 180910
>emb| BX950219.10 | Mouse DNA sequence from clone RP23-303E24 on chromosome 4, complete
sequence
Length = 167874
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 281 aaccatcaataaccaccagct 301
|||||||||||||||||||||
Sbjct: 58533 aaccatcaataaccaccagct 58513
>emb| CT033750.18 | Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
sequence
Length = 268616
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 381 caccatttccctgaggcagca 401
|||||||||||||||||||||
Sbjct: 105481 caccatttccctgaggcagca 105461
>gb| AC079680.34 | Mus musculus strain C57BL/6J chromosome 10 clone rp23-282p18, complete
sequence
Length = 175217
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 296 ccagctgccatgaacagctca 316
|||||||||||||||||||||
Sbjct: 64305 ccagctgccatgaacagctca 64325
>emb| AL845492.10 | Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
sequence
Length = 225684
Score = 42.1 bits (21), Expect = 2.3
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 347 ccatcctcatggtcaaaagcaggga 371
|||||||||| ||||||||||||||
Sbjct: 204068 ccatcctcattgtcaaaagcaggga 204092
>gb| AC112965.10 | Mus musculus chromosome 1, clone RP24-95N17, complete sequence
Length = 158782
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 205 gccacatgcaccaccaattc 224
||||||||||||||||||||
Sbjct: 87170 gccacatgcaccaccaattc 87151
>gb| AC114409.17 | Mus musculus chromosome 5, clone RP23-148F6, complete sequence
Length = 222692
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagc 313
||||||||||||||||||||
Sbjct: 38373 caccagctgccatgaacagc 38354
>emb| CT025848.6 | Mouse DNA sequence from clone RP24-326K2 on chromosome 17, complete
sequence
Length = 172896
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 189 tccttctttcatcttggcca 208
||||||||||||||||||||
Sbjct: 126860 tccttctttcatcttggcca 126841
>gb| AC123033.4 | Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence
Length = 180745
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 294 caccagctgccatgaacagc 313
||||||||||||||||||||
Sbjct: 171209 caccagctgccatgaacagc 171190
>gb| AC116371.5 | Mus musculus chromosome 17, clone RP24-228A1, complete sequence
Length = 109222
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 189 tccttctttcatcttggcca 208
||||||||||||||||||||
Sbjct: 104840 tccttctttcatcttggcca 104859
>emb| AL022101.1 |HS845O24 Human DNA sequence from clone RP5-845O24 on chromosome 1p36.1-36.2
Contains the 3' end of the gene for a novel protein
similar to preferentially expressed antigen in melanoma
(PRAME) (LOC65121), four genes for novel proteins similar
to preferentially expressed antigen in melanoma (PRAME)
(LOC343068, LOC65122, LOC343070 and LOC343071), a novel
gene, a pseudogene similar to preferentially expressed
antigen in melanoma (PRAME) and the gene for a novel
protein similar to heterogeneous nuclear ribonucleoprotein
C (C1/C2) (HNRPC) (LOC343069), complete sequence
Length = 119198
Score = 40.1 bits (20), Expect = 9.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 377 tgtgcaccatttccctgaggcagc 400
||||| ||||||||||||||||||
Sbjct: 52213 tgtgctccatttccctgaggcagc 52190
>emb| Z18946.1 |MLCGA Mycobacteriophage L5 complete genome
Length = 52297
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 450 ggtacgcgggctcgccgtac 469
||||||||||||||||||||
Sbjct: 26507 ggtacgcgggctcgccgtac 26488
>emb| BX294152.1 | Pirellula sp. strain 1 complete genome; segment 20/24
Length = 304250
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 535 ccacccaaagtcagtggagc 554
||||||||||||||||||||
Sbjct: 199109 ccacccaaagtcagtggagc 199090
>emb| CR854856.5 | Human DNA sequence from clone RP13-299H21 on chromosome 1, complete
sequence
Length = 186712
Score = 40.1 bits (20), Expect = 9.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 377 tgtgcaccatttccctgaggcagc 400
||||| ||||||||||||||||||
Sbjct: 123612 tgtgctccatttccctgaggcagc 123589
>gb| AC183109.2 | Pan troglodytes BAC clone CH251-317D18 from chromosome 5, complete
sequence
Length = 169688
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 352 ctcatggtcaaaagcaggga 371
||||||||||||||||||||
Sbjct: 65724 ctcatggtcaaaagcaggga 65743
>gb| AC116427.1 | Homo sapiens chromosome 5 clone CTD-2316N20, complete sequence
Length = 103938
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 352 ctcatggtcaaaagcaggga 371
||||||||||||||||||||
Sbjct: 103263 ctcatggtcaaaagcaggga 103282
>gb| AC139493.3 | Homo sapiens chromosome 5 clone RP11-844P9, complete sequence
Length = 173607
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 352 ctcatggtcaaaagcaggga 371
||||||||||||||||||||
Sbjct: 27199 ctcatggtcaaaagcaggga 27180
>gb| AC008469.4 |AC008469 Homo sapiens chromosome 5 clone CTC-365H24, complete sequence
Length = 104325
Score = 40.1 bits (20), Expect = 9.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 352 ctcatggtcaaaagcaggga 371
||||||||||||||||||||
Sbjct: 41796 ctcatggtcaaaagcaggga 41815
>emb| CR854858.22 | Human DNA sequence from clone RP13-177J6 on chromosome 1, complete
sequence
Length = 168039
Score = 40.1 bits (20), Expect = 9.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 377 tgtgcaccatttccctgaggcagc 400
||||| ||||||||||||||||||
Sbjct: 138900 tgtgctccatttccctgaggcagc 138877
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,771,884
Number of Sequences: 3902068
Number of extensions: 5771884
Number of successful extensions: 94762
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94648
Number of HSP's gapped (non-prelim): 102
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)