ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62n10 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 163 bits (412), Expect(2) = 1e-59 Identities = 80/82 (97%), Positives = 80/82 (97%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWVGSTGIENIGKR VNSRDGPVTFEQPKMTV KLLEYGHMLVQEQDNVKRVQLADT Sbjct: 346 EVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADT 405 Query: 339 YMSQAALGDANQDAMKTGSFYG 274 YMSQAALGDANQDAMKTGSFYG Sbjct: 406 YMSQAALGDANQDAMKTGSFYG 427 Score = 86.3 bits (212), Expect(2) = 1e-59 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 226 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 113 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 127 bits (318), Expect(2) = 6e-43 Identities = 59/82 (71%), Positives = 70/82 (85%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWV G++ IGK+ VNS++GP +FEQPKMT+ KLL YG MLVQEQ+NVKRVQLAD Sbjct: 356 EVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADK 415 Query: 339 YMSQAALGDANQDAMKTGSFYG 274 YMS+AALGDAN DA+K G+FYG Sbjct: 416 YMSEAALGDANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 6e-43 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -1 Query: 229 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 113 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 128 bits (321), Expect(2) = 2e-42 Identities = 58/82 (70%), Positives = 72/82 (87%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWV S G++N+GK+ VNS+DGP FEQP+MT+ KL+EYG+MLVQEQ+NVKRVQLAD Sbjct: 354 EVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQ 413 Query: 339 YMSQAALGDANQDAMKTGSFYG 274 YMS AALGDAN+DA+ G+F+G Sbjct: 414 YMSSAALGDANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 2e-42 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -1 Query: 226 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 119 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 122 bits (306), Expect(2) = 7e-42 Identities = 59/82 (71%), Positives = 70/82 (85%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRK+V S G+E IGKR VNSR+GP FEQP+MT KL+EYG+MLV EQ+NVKRVQLA+T Sbjct: 356 EVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAET 415 Query: 339 YMSQAALGDANQDAMKTGSFYG 274 Y+SQAALGDAN DA+ G+FYG Sbjct: 416 YLSQAALGDANADAIGRGTFYG 437 Score = 67.8 bits (164), Expect(2) = 7e-42 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -1 Query: 226 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 113 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 139 bits (349), Expect = 6e-33 Identities = 64/82 (78%), Positives = 73/82 (89%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWVG G+ENI KR VNSR+GP TF+QPKMT+ KL+EYGHMLVQEQ+NVKRVQLAD Sbjct: 343 EVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADK 402 Query: 339 YMSQAALGDANQDAMKTGSFYG 274 Y+S+AALG AN DAMKTG+FYG Sbjct: 403 YLSEAALGQANDDAMKTGAFYG 424
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 138 bits (347), Expect = 1e-32 Identities = 64/82 (78%), Positives = 74/82 (90%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWV TG+ENIGKR VNSR+GP FEQPKMT+ KL+EYG+MLV+EQ+NVKRVQLA+ Sbjct: 346 EVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQ 405 Query: 339 YMSQAALGDANQDAMKTGSFYG 274 Y+S+AALGDAN DAMKTGSFYG Sbjct: 406 YLSEAALGDANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 132 bits (332), Expect = 6e-31 Identities = 60/82 (73%), Positives = 73/82 (89%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKW+ G+++IGK+ VNS++GP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLAD Sbjct: 356 EVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 415 Query: 339 YMSQAALGDANQDAMKTGSFYG 274 Y+S+AALGDAN DAM TG+FYG Sbjct: 416 YLSEAALGDANSDAMNTGTFYG 437
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 130 bits (326), Expect = 3e-30 Identities = 58/81 (71%), Positives = 73/81 (90%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVR+WV TG+ENI ++ VNS++GP TFEQPK+T+ KLLEYGHMLV EQ+NVKRVQLAD Sbjct: 352 EVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADK 411 Query: 339 YMSQAALGDANQDAMKTGSFY 277 Y+++AALG+AN+DAMKTGSF+ Sbjct: 412 YLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 127 bits (318), Expect = 2e-29 Identities = 58/80 (72%), Positives = 71/80 (88%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWV G++ IGK+ VNS++GP TFEQPKMT+ KLL+YG+MLV+EQ+NVKRVQLAD Sbjct: 356 EVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADK 415 Query: 339 YMSQAALGDANQDAMKTGSF 280 YMS+AALGDANQDA+K G+F Sbjct: 416 YMSEAALGDANQDAIKRGTF 435
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 124 bits (312), Expect = 1e-28 Identities = 60/80 (75%), Positives = 69/80 (86%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWV TGIE IG + +NS DGP TFEQPKMTV KLLEYG+MLVQEQ+NVKRVQLA+T Sbjct: 360 EVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAET 419 Query: 339 YMSQAALGDANQDAMKTGSF 280 Y+ +AALGDAN DA+ TG+F Sbjct: 420 YLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 124 bits (312), Expect = 1e-28 Identities = 59/81 (72%), Positives = 68/81 (83%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWV TGIE IG + +NS DGP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLAD Sbjct: 360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 419 Query: 339 YMSQAALGDANQDAMKTGSFY 277 Y+ +AALGDAN DA+ GSF+ Sbjct: 420 YLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 124 bits (311), Expect = 2e-28 Identities = 59/78 (75%), Positives = 69/78 (88%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKWV TGIE IG++ +NSRDGP TFEQPKMT+ KLLEYG+MLVQEQ+NVKRVQLA+T Sbjct: 355 EVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAET 414 Query: 339 YMSQAALGDANQDAMKTG 286 Y+ +AALGDAN DA+ TG Sbjct: 415 YLKEAALGDANADAINTG 432
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 119 bits (298), Expect = 5e-27 Identities = 52/81 (64%), Positives = 72/81 (88%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKW+ G++ GK+ VNS++GP TF+QPKM++ KLL+YG+MLVQEQ+NVKRVQLAD Sbjct: 358 EVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADK 417 Query: 339 YMSQAALGDANQDAMKTGSFY 277 Y+++AALG+AN+DA+K+GSF+ Sbjct: 418 YLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 118 bits (296), Expect = 9e-27 Identities = 52/81 (64%), Positives = 71/81 (87%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 EVRKW+ G++++GK+ VNS++GP TF+QPKMT+ KLL Y MLVQEQ+NVKRVQLAD Sbjct: 360 EVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQ 419 Query: 339 YMSQAALGDANQDAMKTGSFY 277 Y+++AALG+AN+DA+K+GSF+ Sbjct: 420 YLNEAALGNANEDAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 82.8 bits (203), Expect = 5e-16 Identities = 37/57 (64%), Positives = 46/57 (80%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQL 349 EVRKW G+E IG+ VNS++ P TF+QPKMT+ KLLEYG+MLV EQ+NVKRV+L Sbjct: 353 EVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 64.3 bits (155), Expect = 2e-10 Identities = 32/66 (48%), Positives = 45/66 (68%) Frame = -2 Query: 516 VRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADTY 337 VR+W+ TG++ IG++ VN+R V + M + L++YG LV EQ+NVKRVQLAD Y Sbjct: 330 VRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAY 388 Query: 336 MSQAAL 319 +S A L Sbjct: 389 LSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 51.6 bits (122), Expect = 1e-06 Identities = 22/61 (36%), Positives = 36/61 (59%) Frame = -2 Query: 519 EVRKWVGSTGIENIGKRXVNSRDGPVTFEQPKMTVXKLLEYGHMLVQEQDNVKRVQLADT 340 ++R ++ G EN+ R VNS +GP F++P T+ L+E + +V EQ ++ QL D Sbjct: 229 QIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDE 288 Query: 339 Y 337 Y Sbjct: 289 Y 289
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 341 VSASCTRLTLSCSWTSMCPYSSSFXTVIFGCSKVT 445 + +SC+R TL T CP SS TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 29.3 bits (64), Expect = 6.8 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Frame = -2 Query: 444 VTFEQPKMTVX-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 289 VTF +T K +E H +QE NVK + + D A N M+ Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337 Query: 288 GSFYG*KILHTHPPSLAA 235 GSF I+ HP ++A Sbjct: 338 GSFTAQVIILNHPGQISA 355
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -1 Query: 286 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 128 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,492,272 Number of Sequences: 219361 Number of extensions: 1419262 Number of successful extensions: 3752 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3648 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3750 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
