ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah62n10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 914 bits (461), Expect = 0.0 Identities = 500/509 (98%), Gaps = 4/509 (0%) Strand = Plus / Minus Query: 16 tatttagggnnatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 75 ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625 Query: 76 -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 134 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565 Query: 135 t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 193 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505 Query: 194 ca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 252 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 1445 Query: 253 gtgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 311 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1444 gtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 1385 Query: 312 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 1325 Query: 372 cctgctcctggacgagcatgtgcccgtactctagcagcttctngactgtcatctttggct 431 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1324 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 1265 Query: 432 gctcgaaggtcacgggcccgtcccgcgagttcaccancctcttgccaatgttctcgattc 491 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1264 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 1205 Query: 492 cggtagagccgacccacttgcgcacctca 520 ||||||||||||||||||||||||||||| Sbjct: 1204 cggtagagccgacccacttgcgcacctca 1176
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 724 bits (365), Expect = 0.0 Identities = 467/499 (93%), Gaps = 7/499 (1%) Strand = Plus / Minus Query: 27 atattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----gg 80 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 744 atattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaagga 685 Query: 81 taaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcg 140 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 684 taaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtca 626 Query: 141 ctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggc 200 ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||| Sbjct: 625 ctcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggc 566 Query: 201 aaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtat 260 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 aaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtat 506 Query: 261 ggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcaccca 320 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 505 ggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcaccca 446 Query: 321 gagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 gagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 386 Query: 381 ggacgagcatgtgcccgtactctagcagcttctngactgtcatctttggctgctcgaagg 440 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 385 ggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaagg 326 Query: 441 tcacgggcccgtcccgcgagttcaccancctcttgccaatgttctcgattccggtagagc 500 |||| || ||||||||||||||||||| | ||||||||||||||||||| ||||||||| Sbjct: 325 tcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtagagg 266 Query: 501 cgacccacttgcgcacctc 519 ||||||||||||||||| Sbjct: 265 tcacccacttgcgcacctc 247
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 724 bits (365), Expect = 0.0 Identities = 467/499 (93%), Gaps = 7/499 (1%) Strand = Plus / Minus Query: 27 atattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----gg 80 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 1594 atattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaagga 1535 Query: 81 taaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcg 140 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1534 taaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtca 1476 Query: 141 ctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggc 200 ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||| Sbjct: 1475 ctcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggc 1416 Query: 201 aaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtat 260 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1415 aaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtat 1356 Query: 261 ggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcaccca 320 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1355 ggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcaccca 1296 Query: 321 gagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1295 gagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 1236 Query: 381 ggacgagcatgtgcccgtactctagcagcttctngactgtcatctttggctgctcgaagg 440 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 1235 ggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaagg 1176 Query: 441 tcacgggcccgtcccgcgagttcaccancctcttgccaatgttctcgattccggtagagc 500 |||| || ||||||||||||||||||| | ||||||||||||||||||| ||||||||| Sbjct: 1175 tcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtagagg 1116 Query: 501 cgacccacttgcgcacctc 519 ||||||||||||||||| Sbjct: 1115 tcacccacttgcgcacctc 1097
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 577 bits (291), Expect = e-161 Identities = 295/297 (99%) Strand = Plus / Minus Query: 224 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 284 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 344 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 404 agcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 463 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 464 accancctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca 520 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca 7059 Score = 412 bits (208), Expect = e-112 Identities = 215/218 (98%) Strand = Plus / Minus Query: 11 caatatatttagggnnatattaacaaaacatgcccagcaatcgcttggatgcgatgcgga 70 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7740 caatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgga 7681 Query: 71 cttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagct 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7680 cttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagct 7621 Query: 131 gccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7620 gccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttc 7561 Query: 191 cggcacgggcaaagtaccttgctgtgctcctttacctc 228 |||||||||||||||||||||||||||||||||||||| Sbjct: 7560 cggcacgggcaaagtaccttgctgtgctcctttacctc 7523 Score = 75.8 bits (38), Expect = 1e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 350 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 410 ttctngactgtcatctttggctgctcgaa 438 |||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 499 gccgacccacttgcgcacctc 519 ||||||||||||||||||||| Sbjct: 3812 gccgacccacttgcgcacctc 3792
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 539 bits (272), Expect = e-150 Identities = 437/489 (89%), Gaps = 9/489 (1%) Strand = Plus / Minus Query: 39 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 92 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 93 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 151 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 152 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 211 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 212 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 271 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 272 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 331 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 332 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 391 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 392 tgcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccg 451 || |||||||| |||| ||||| || |||||||| |||||||||||||| ||||| ||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176 Query: 452 tcccgcgagttcaccancctcttgccaatgttctcgattccggtagagccgacccacttg 511 |||||||||||||||| ||||||||| |||||||| |||||||| || ||||||||| Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttg 1116 Query: 512 cgcacctca 520 ||||||||| Sbjct: 1115 cgcacctca 1107
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 478 bits (241), Expect = e-132 Identities = 245/247 (99%) Strand = Plus / Minus Query: 274 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 334 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 394 cccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgtc 453 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 454 ccgcgagttcaccancctcttgccaatgttctcgattccggtagagccgacccacttgcg 513 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 514 cacctca 520 ||||||| Sbjct: 927 cacctca 921 Score = 408 bits (206), Expect = e-111 Identities = 213/216 (98%) Strand = Plus / Minus Query: 11 caatatatttagggnnatattaacaaaacatgcccagcaatcgcttggatgcgatgcgga 70 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1380 caatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgga 1321 Query: 71 cttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagct 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1320 cttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagct 1261 Query: 131 gccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1260 gccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttc 1201 Query: 191 cggcacgggcaaagtaccttgctgtgctcctttacc 226 |||||||||||||||||||||||||||||||||||| Sbjct: 1200 cggcacgggcaaagtaccttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 440 bits (222), Expect = e-120 Identities = 256/268 (95%) Strand = Plus / Minus Query: 252 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 311 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 312 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 372 cctgctcctggacgagcatgtgcccgtactctagcagcttctngactgtcatctttggct 431 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 432 gctcgaaggtcacgggcccgtcccgcgagttcaccancctcttgccaatgttctcgattc 491 |||| |||||||| || ||||||||||||||||| | | ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 492 cggtagagccgacccacttgcgcacctc 519 |||||||| ||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctc 41
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 309 bits (156), Expect = 5e-81 Identities = 223/246 (90%) Strand = Plus / Minus Query: 274 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 333 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 334 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 393 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 394 cccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgtc 453 |||||||| |||| ||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 454 ccgcgagttcaccancctcttgccaatgttctcgattccggtagagccgacccacttgcg 513 |||||||||||||| ||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 514 cacctc 519 |||||| Sbjct: 1123 cacctc 1118 Score = 176 bits (89), Expect = 5e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 98 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 157 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 158 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 217 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 218 tcctttacc 226 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 167 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 224 acctcctcct 233 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 111 bits (56), Expect = 2e-21 Identities = 174/214 (81%) Strand = Plus / Minus Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 393 gcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgt 452 |||||||| | ||||| | || |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 453 cccgcgagttcaccancctcttgccaatgttctc 486 ||| ||||||||||| |||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 167 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 224 acctcctcct 233 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 111 bits (56), Expect = 2e-21 Identities = 174/214 (81%) Strand = Plus / Minus Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 393 gcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgt 452 |||||||| | ||||| | || |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 453 cccgcgagttcaccancctcttgccaatgttctc 486 ||| ||||||||||| |||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 167 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 224 acctcctcct 233 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 111 bits (56), Expect = 2e-21 Identities = 174/214 (81%) Strand = Plus / Minus Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 393 gcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgt 452 |||||||| | ||||| | || |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 453 cccgcgagttcaccancctcttgccaatgttctc 486 ||| ||||||||||| |||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 167 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 224 acctcctcct 233 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 111 bits (56), Expect = 2e-21 Identities = 174/214 (81%) Strand = Plus / Minus Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 393 gcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgt 452 |||||||| | ||||| | || |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 453 cccgcgagttcaccancctcttgccaatgttctc 486 ||| ||||||||||| |||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 167 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 224 acctcctcct 233 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 111 bits (56), Expect = 2e-21 Identities = 174/214 (81%) Strand = Plus / Minus Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 393 gcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgt 452 |||||||| | ||||| | || |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 453 cccgcgagttcaccancctcttgccaatgttctc 486 ||| ||||||||||| |||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 117 bits (59), Expect = 4e-23 Identities = 177/217 (81%) Strand = Plus / Plus Query: 270 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 330 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 390 tgtgcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcc 449 ||| |||||||| | ||||| | || |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 450 cgtcccgcgagttcaccancctcttgccaatgttctc 486 | |||| ||||||||||| |||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 125 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 185 accttccggcacggg 199 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 117 bits (59), Expect = 4e-23 Identities = 177/217 (81%) Strand = Plus / Plus Query: 270 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 330 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 390 tgtgcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcc 449 ||| |||||||| | ||||| | || |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 450 cgtcccgcgagttcaccancctcttgccaatgttctc 486 | |||| ||||||||||| |||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 125 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 185 accttccggcacggg 199 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 111 bits (56), Expect = 2e-21 Identities = 174/214 (81%) Strand = Plus / Minus Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 393 gcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgt 452 |||||||| | ||||| | || |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 453 cccgcgagttcaccancctcttgccaatgttctc 486 ||| ||||||||||| |||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 107 bits (54), Expect = 4e-20 Identities = 172/212 (81%) Strand = Plus / Minus Query: 275 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 334 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 335 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 394 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 395 ccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgtcc 454 |||||||| | ||||| | || |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 455 cgcgagttcaccancctcttgccaatgttctc 486 | ||||||||||| |||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 117 bits (59), Expect = 4e-23 Identities = 177/217 (81%) Strand = Plus / Plus Query: 270 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 330 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 390 tgtgcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcc 449 ||| |||||||| | ||||| | || |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 450 cgtcccgcgagttcaccancctcttgccaatgttctc 486 | |||| ||||||||||| |||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 125 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 185 accttccggcacggg 199 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 117 bits (59), Expect = 4e-23 Identities = 177/217 (81%) Strand = Plus / Plus Query: 270 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 330 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 390 tgtgcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcc 449 ||| |||||||| | ||||| | || |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 450 cgtcccgcgagttcaccancctcttgccaatgttctc 486 | |||| ||||||||||| |||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 125 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 185 accttccggcacggg 199 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 107 bits (54), Expect = 4e-20 Identities = 172/212 (81%) Strand = Plus / Minus Query: 275 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 334 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 335 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 394 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 395 ccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgtcc 454 |||||||| | ||||| | || |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 455 cgcgagttcaccancctcttgccaatgttctc 486 | ||||||||||| |||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 113 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 172 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 173 ttggtcggtgcaaccttccggcacgggca 201 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 119 bits (60), Expect = 9e-24 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 167 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 224 acctcctcct 233 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 111 bits (56), Expect = 2e-21 Identities = 174/214 (81%) Strand = Plus / Minus Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 393 gcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgt 452 |||||||| | ||||| | || |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 453 cccgcgagttcaccancctcttgccaatgttctc 486 ||| ||||||||||| |||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 113 bits (57), Expect = 6e-22 Identities = 169/207 (81%) Strand = Plus / Minus Query: 271 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 330 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 331 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 390 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 391 gtgcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggccc 450 || |||||||| |||||||| | | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 451 gtcccgcgagttcaccancctcttgcc 477 ||| |||||||||||| ||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 117 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 177 tcggtgcaaccttc 190 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 111 bits (56), Expect = 2e-21 Identities = 174/214 (81%) Strand = Plus / Minus Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 393 gcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgt 452 |||||||| | ||||| | || |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 453 cccgcgagttcaccancctcttgccaatgttctc 486 ||| ||||||||||| |||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 107 bits (54), Expect = 4e-20 Identities = 163/200 (81%) Strand = Plus / Minus Query: 278 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 337 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 338 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 397 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 398 tactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 457 ||||| |||||||| | | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 458 gagttcaccancctcttgcc 477 |||||||||| ||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 117 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 177 tcggtgcaaccttc 190 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 91.7 bits (46), Expect = 2e-15 Identities = 164/204 (80%) Strand = Plus / Minus Query: 271 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 330 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 331 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 390 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 391 gtgcccgtactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggccc 450 | |||||||| |||||||| | | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 451 gtcccgcgagttcaccancctctt 474 ||| |||||||||||| |||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 117 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 177 tcggtgcaaccttc 190 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 89.7 bits (45), Expect = 8e-15 Identities = 131/160 (81%) Strand = Plus / Minus Query: 279 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 339 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 399 actctagcagcttctngactgtcatctttggctgctcgaa 438 |||| | ||||||| || || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 89.7 bits (45), Expect = 8e-15 Identities = 131/160 (81%) Strand = Plus / Minus Query: 279 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 339 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 399 actctagcagcttctngactgtcatctttggctgctcgaa 438 |||| | ||||||| || || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 89.7 bits (45), Expect = 8e-15 Identities = 131/160 (81%) Strand = Plus / Minus Query: 279 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 339 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 399 actctagcagcttctngactgtcatctttggctgctcgaa 438 |||| | ||||||| || || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 85.7 bits (43), Expect = 1e-13 Identities = 158/197 (80%) Strand = Plus / Minus Query: 278 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 337 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 338 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 397 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 398 tactctagcagcttctngactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 457 ||||| |||||||| | | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 458 gagttcaccancctctt 474 |||||||||| |||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 117 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 177 tcggtgcaaccttc 190 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 8e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 296 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 355 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 356 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 411 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 75.8 bits (38), Expect = 1e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 350 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 410 ttctngactgtcatctttggctgctcgaa 438 |||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 499 gccgacccacttgcgcacctc 519 ||||||||||||||||||||| Sbjct: 1243 gccgacccacttgcgcacctc 1223
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 71.9 bits (36), Expect = 2e-09 Identities = 136/170 (80%) Strand = Plus / Minus Query: 350 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 410 ttctngactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccanc 469 |||| || |||||||| ||||| ||||| ||| ||||| |||| ||||| || | | Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 470 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctc 519 | |||| |||||||||| ||| | ||||||||||||||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctc 1073
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 50.1 bits (25), Expect = 0.007 Identities = 105/132 (79%) Strand = Plus / Minus Query: 307 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 366 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 367 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctngactgtcatctt 426 ||| || ||||| ||||| ||||||| |||||||| || ||||| | || |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 427 tggctgctcgaa 438 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.45 Identities = 43/50 (86%) Strand = Plus / Minus Query: 299 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 348 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 catcacccagagctgcctggct 333 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 aaacatcagatattaaaagtg 103 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 atgcagcaagagatggtgggt 254 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 350 agctgcacacgcttgacattgtcctgctc 378 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 aaacatcagatattaaaagtg 103 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 aaacatcagatattaaaagtg 103 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cctttacctcctcctatgca 238 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 catcacccagagctgcctggctca 335 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cctttacctcctcctatgca 238 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 7.0 Identities = 68/84 (80%) Strand = Plus / Minus Query: 308 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 367 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 368 ttgtcctgctcctggacgagcatg 391 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cctttacctcctcctatgca 238 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gtcagcaagctgcacacgct 362 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tcagatattaaaagtggcat 107 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tcagatattaaaagtggcat 107 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tcagatattaaaagtggcat 107 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 catcacccagagctgcctggctca 335 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ttgacattgtcctgctcctg 381 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 catcacccagagctgcctggctca 335 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 116 ggtgtaaaggcagctgccgtcgtcgctc 143 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 aaacatgcccagcaatcgcttgga 59 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cctttacctcctcctatgca 238 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 catcacccagagctgcctggctca 335 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 catcacccagagctgcctggctca 335 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 catcacccagagctgcctggctca 335 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tggcatgcttaaaaggtgta 121 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 ttgacattgtcctgctcctg 381 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 catcacccagagctgcctggctca 335 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 cttgctgtgctcctttacctcctc 231 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cctttacctcctcctatgca 238 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 atcagatattaaaagtggcatgct 110 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,553,709 Number of Sequences: 3902068 Number of extensions: 3553709 Number of successful extensions: 63028 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 62746 Number of HSP's gapped (non-prelim): 230 length of query: 520 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 497 effective length of database: 17,143,297,704 effective search space: 8520218958888 effective search space used: 8520218958888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
