ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63c08 |
|---|---|
| Clone Library Name | barley_pub |
>CERK1_HUMAN (Q8TCT0) Ceramide kinase (EC 2.7.1.138) (Acylsphingosine kinase)| (hCERK) (Lipid kinase 4) (LK4) Length = 537 Score = 35.0 bits (79), Expect = 0.13 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = -2 Query: 514 GHFLGVLVCNHSCKTVQSSQVVAPNASHDDNSLDLLLVGGRGRWKLLRFFI 362 G FL + N SC +S + ++P A D S DL+L+ R+ LRF I Sbjct: 386 GKFLAINATNMSCACRRSPRGLSPAAHLGDGSSDLILIRKCSRFNFLRFLI 436
>CERK1_MOUSE (Q8K4Q7) Ceramide kinase (EC 2.7.1.138) (Acylsphingosine kinase)| (mCERK) Length = 531 Score = 33.9 bits (76), Expect = 0.28 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = -2 Query: 514 GHFLGVLVCNHSCKTVQSSQVVAPNASHDDNSLDLLLVGGRGRWKLLRFFI 362 G FL + N SC +S ++P A D S DL+L+ R+ LRF I Sbjct: 386 GKFLAINATNMSCACPRSPGGLSPFAHLGDGSSDLILIRKCSRFNFLRFLI 436
>SPHK2_MOUSE (Q9JIA7) Sphingosine kinase 2 (EC 2.7.1.-) (SK 2) (SPK 2)| Length = 617 Score = 32.0 bits (71), Expect = 1.1 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Frame = -2 Query: 505 LGVLVCNHSCKTVQSSQVVAPNASHDDNSLDLLLV-GGRGRWKLLRFFILLQFGRHLSL- 332 LG+L +H C + + AP+A DD + L V G R LLR + ++ G H SL Sbjct: 506 LGILP-SHLCADLMA----APHARFDDGVVHLCWVRSGISRAALLRILLAMEHGNHFSLG 560 Query: 331 -PYVEYXXXXXXXXKPGANTHNGCGIDGEL 245 P++ Y +P +DGEL Sbjct: 561 CPHLGYAAARAFRLEP-LTPRGLLTVDGEL 589
>SPHK2_HUMAN (Q9NRA0) Sphingosine kinase 2 (EC 2.7.1.-) (SK 2) (SPK 2)| Length = 654 Score = 31.2 bits (69), Expect = 1.8 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Frame = -2 Query: 526 VVRKGHFLGVLVCNHSCKTVQSSQVVAPNASHDDNSLDLLLV-GGRGRWKLLRFFILLQF 350 V +G F+ +L + S + + V AP+A DD + L V G R LLR F+ ++ Sbjct: 532 VTLEGDFVLMLAISPS--HLGADLVAAPHARFDDGLVHLCWVRSGISRAALLRLFLAMER 589 Query: 349 GRHLSL--PYVEYXXXXXXXXKP 287 G H SL P + Y +P Sbjct: 590 GSHFSLGCPQLGYAAARAFRLEP 612
>SYL_SHIFL (Q83LX5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 30.4 bits (67), Expect = 3.1 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP+ +++ N GCC +C+ Sbjct: 155 AVNWCPNDQTVLANEQVIDGCCWRCD 180
>SYL_SALTY (Q8ZQZ6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 30.4 bits (67), Expect = 3.1 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP+ +++ N GCC +C+ Sbjct: 155 AVNWCPNDQTVLANEQVIDGCCWRCD 180
>SYL_SALTI (Q8Z8H5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 30.4 bits (67), Expect = 3.1 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP+ +++ N GCC +C+ Sbjct: 155 AVNWCPNDQTVLANEQVIDGCCWRCD 180
>SYL_ERWCT (Q6D7L6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 30.4 bits (67), Expect = 3.1 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP+ +++ N GCC +C+ Sbjct: 155 AVNWCPNDQTVLANEQVIDGCCWRCD 180
>SYL_ECOLI (P07813) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 30.4 bits (67), Expect = 3.1 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP+ +++ N GCC +C+ Sbjct: 155 AVNWCPNDQTVLANEQVIDGCCWRCD 180
>SYL_ECOL6 (Q8FJY9) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 30.4 bits (67), Expect = 3.1 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP+ +++ N GCC +C+ Sbjct: 155 AVNWCPNDQTVLANEQVIDGCCWRCD 180
>SYL_ECO57 (Q8XBN8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 30.4 bits (67), Expect = 3.1 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP+ +++ N GCC +C+ Sbjct: 155 AVNWCPNDQTVLANEQVIDGCCWRCD 180
>SYL_YERPS (Q66DE3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 29.6 bits (65), Expect = 5.3 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP +++ N GCC +C+ Sbjct: 155 AVNWCPHDLTVLANEQVIDGCCWRCD 180
>SYL_YERPE (Q8ZDF8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 860 Score = 29.6 bits (65), Expect = 5.3 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = -1 Query: 512 ALSWCPSM*SLMQNSSKFPGCCSKCE 435 A++WCP +++ N GCC +C+ Sbjct: 155 AVNWCPHDLTVLANEQVIDGCCWRCD 180
>BCA1_YEAST (P38891) Branched-chain-amino-acid aminotransferase, mitochondrial| precursor (EC 2.6.1.42) (BCAT) (TWT1 protein) (ECA39 protein) Length = 393 Score = 29.3 bits (64), Expect = 7.0 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = +3 Query: 192 SLHCSGSMEQTTCPLTRQSSPSIPQPLWVFAPGLTLTDFTLTYST*GKERW-RPNCSSMK 368 +L ++ + +TR +PS P+P G T TD LT KE W P+ Sbjct: 16 TLATGAPLDASKLKITRNPNPSKPRPNEELVFGQTFTDHMLTIPWSAKEGWGTPHIKPYG 75 Query: 369 NLN 377 NL+ Sbjct: 76 NLS 78
>LEM2_CAEEL (Q9XTB5) LEM protein 2 (Ce-MAN1) (MAN1 homolog)| Length = 500 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +3 Query: 204 SGSMEQTTCPLTRQSSPSIPQPLWVFAPGLTLTDFTLTYST*GKER 341 + S +TT T PS P+ + PGL +TDFT ++ST G +R Sbjct: 173 TSSSSKTTINTTTTRIPSTPRRI-TSVPGL-ITDFTPSFSTFGSDR 216
>ATR_ARATH (Q9FKS4) Serine/threonine-protein kinase ATR (EC 2.7.11.1)| (DNA-repair protein ATR) (AtATR) (Ataxia telangiectasia-mutated and Rad3-related homolog) (Rad3-like protein) (AtRAD3) Length = 2702 Score = 28.9 bits (63), Expect = 9.1 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -3 Query: 483 THAKQFKVPRLLLQMRAMTITVWTYF*LVEGGD 385 TH FK P L++ + +++ +WT L +G D Sbjct: 576 THYMLFKTPSSLVKSKCLSVGIWTKLGLQDGSD 608 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,351,986 Number of Sequences: 219361 Number of extensions: 1602051 Number of successful extensions: 4040 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4036 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
