ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63c07 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 190 bits (482), Expect = 2e-48 Identities = 90/90 (100%), Positives = 90/90 (100%) Frame = -2 Query: 538 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 359 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP Sbjct: 235 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 294 Query: 358 FVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 269 FVKEGVTNGTLKLVGGHYDFVSGKFETWEQ Sbjct: 295 FVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 324
>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 321 Score = 112 bits (281), Expect = 5e-25 Identities = 55/88 (62%), Positives = 62/88 (70%) Frame = -2 Query: 538 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 359 +SL +S F+EDWV+IG PAK KVQ E F DQCT EKEAVNVSL NLLTYP Sbjct: 222 MSLPADGSESTAFIEDWVKIGLPAKAKVQGEHVDKCFADQCTACEKEAVNVSLGNLLTYP 281 Query: 358 FVKEGVTNGTLKLVGGHYDFVSGKFETW 275 FV+EG+ TL L GGHYDFV+G FE W Sbjct: 282 FVREGLVKKTLALKGGHYDFVNGGFELW 309
>CAH2_ARATH (P42737) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) Length = 259 Score = 110 bits (274), Expect = 3e-24 Identities = 52/82 (63%), Positives = 61/82 (74%) Frame = -2 Query: 517 DDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVT 338 ++S F+EDWV+I PAK KV E S F+DQC E+EAVNVSL NLLTYPFV+EGV Sbjct: 167 NNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCEREAVNVSLANLLTYPFVREGVV 226 Query: 337 NGTLKLVGGHYDFVSGKFETWE 272 GTL L GG+YDFV+G FE WE Sbjct: 227 KGTLALKGGYYDFVNGSFELWE 248
>CAHX_FLABR (P46511) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 107 bits (266), Expect = 3e-23 Identities = 50/88 (56%), Positives = 60/88 (68%) Frame = -2 Query: 538 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 359 ++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL NLLTYP Sbjct: 231 MTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYP 290 Query: 358 FVKEGVTNGTLKLVGGHYDFVSGKFETW 275 FV++G+ N TL L GGHYDFV+G FE W Sbjct: 291 FVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 329 Score = 107 bits (266), Expect = 3e-23 Identities = 50/88 (56%), Positives = 60/88 (68%) Frame = -2 Query: 538 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 359 ++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL NLLTYP Sbjct: 230 MTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYP 289 Query: 358 FVKEGVTNGTLKLVGGHYDFVSGKFETW 275 FV++G+ N TL L GGHYDFV+G FE W Sbjct: 290 FVRDGLRNNTLALKGGHYDFVNGTFELW 317
>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 106 bits (264), Expect = 5e-23 Identities = 50/88 (56%), Positives = 60/88 (68%) Frame = -2 Query: 538 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 359 ++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL NLLTYP Sbjct: 231 MTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYP 290 Query: 358 FVKEGVTNGTLKLVGGHYDFVSGKFETW 275 FV++G+ N TL L GGHYDFV+G FE W Sbjct: 291 FVRDGLRNKTLALKGGHYDFVNGTFELW 318
>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase| 1) Length = 330 Score = 105 bits (263), Expect = 6e-23 Identities = 50/88 (56%), Positives = 59/88 (67%) Frame = -2 Query: 538 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 359 ++ D S F+EDWV++ PAK KV E DDQC EKEAVNVSL NLLTYP Sbjct: 231 MTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVQCEKEAVNVSLGNLLTYP 290 Query: 358 FVKEGVTNGTLKLVGGHYDFVSGKFETW 275 FV++G+ N TL L GGHYDFV+G FE W Sbjct: 291 FVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHC_ARATH (P27140) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 347 Score = 105 bits (261), Expect = 1e-22 Identities = 49/81 (60%), Positives = 59/81 (72%) Frame = -2 Query: 517 DDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVT 338 ++S F+EDWV+I PAK KV +E F+DQC E+EAVNVSL NLLTYPFV+EG+ Sbjct: 244 NNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLV 303 Query: 337 NGTLKLVGGHYDFVSGKFETW 275 GTL L GG+YDFV G FE W Sbjct: 304 KGTLALKGGYYDFVKGAFELW 324
>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) (Fragment) Length = 190 Score = 103 bits (258), Expect = 2e-22 Identities = 46/88 (52%), Positives = 60/88 (68%) Frame = -2 Query: 538 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 359 +S+ D + F+E WV++G PAK KV+ C ++ F D CT EKEAVNVSL NLLTYP Sbjct: 91 MSIPDDGTPASDFIEQWVKLGLPAKSKVKANCNNLEFADLCTKCEKEAVNVSLGNLLTYP 150 Query: 358 FVKEGVTNGTLKLVGGHYDFVSGKFETW 275 FV++ + N L L G HYDFV+G F+ W Sbjct: 151 FVRDALVNKKLSLKGAHYDFVNGAFDLW 178
>CAHC_PEA (P17067) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) [Contains: Carbonic anhydrase, 27 kDa isoform; Carbonic anhydrase, 25 kDa isoform] Length = 328 Score = 103 bits (258), Expect = 2e-22 Identities = 48/79 (60%), Positives = 57/79 (72%) Frame = -2 Query: 511 SFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNG 332 S F+E+WV+IG PAK KV+ + PF + CT EKEAVN SL NLLTYPFV+EG+ N Sbjct: 238 STDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNK 297 Query: 331 TLKLVGGHYDFVSGKFETW 275 TL L GG+YDFV G FE W Sbjct: 298 TLALKGGYYDFVKGSFELW 316
>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 319 Score = 102 bits (255), Expect = 5e-22 Identities = 49/88 (55%), Positives = 60/88 (68%) Frame = -2 Query: 538 LSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYP 359 +S D + F+EDWV+I PAK KV E + F +QCT EKEAVNVSL NLLTYP Sbjct: 220 MSFPDAGPTTTDFIEDWVKICLPAKHKVLAEHGNATFAEQCTHCEKEAVNVSLGNLLTYP 279 Query: 358 FVKEGVTNGTLKLVGGHYDFVSGKFETW 275 FV++G+ TL L GG+YDFV+G FE W Sbjct: 280 FVRDGLVKKTLALQGGYYDFVNGSFELW 307
>CYNT_HELPJ (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1)| Length = 221 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = -2 Query: 502 FVEDWVRIGFPAKKKVQTECA-SMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTL 326 ++ +W++ P K++++ S F + + E+ + L NLL+Y F++E V N L Sbjct: 122 YIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNEL 181 Query: 325 KLVGGHYDFVSGK 287 K+ G HY +G+ Sbjct: 182 KIFGWHYIIETGR 194
>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)| Length = 272 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = -2 Query: 499 VEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKL 320 V DW++ ++ V + DD +L E V ++NL TYP V+ + G L++ Sbjct: 120 VYDWLQHAQATRRLVLDNYSGYETDDLVEILVAENVLTQIENLKTYPIVRSRLFQGKLQI 179 Query: 319 VGGHYDFVSGK 287 G Y+ SG+ Sbjct: 180 FGWIYEVESGE 190
>CYNT_HELPY (O24855) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 221 Score = 38.9 bits (89), Expect = 0.009 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 502 FVEDWVRIGFPAKKKVQTECA-SMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTL 326 ++ +W++ P K++++ S F + + E+ + L NLL+Y F++E + L Sbjct: 122 YIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNEL 181 Query: 325 KLVGGHYDFVSGK 287 K+ G HY +G+ Sbjct: 182 KIFGWHYIIETGR 194
>ACCD_PICAB (O47039) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 319 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = +2 Query: 188 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 367 AL+ + D+ L+YV + S TGG + F + GD ++ G ++D+ +G Sbjct: 220 ALYIPQKDNRLLYVSILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKIVIDQTLG 276 Query: 368 QEVLE 382 Q+V+E Sbjct: 277 QKVIE 281
>ACCD_PINTH (P52769) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 321 Score = 34.3 bits (77), Expect = 0.23 Identities = 17/65 (26%), Positives = 34/65 (52%) Frame = +2 Query: 188 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 367 AL+ H+ + L+Y+ + S TGG + F + GD ++ G ++++ +G Sbjct: 220 ALYIHQKEKKLLYISILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKRVIEQTLG 276 Query: 368 QEVLE 382 Q+V+E Sbjct: 277 QKVIE 281
>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 426 Score = 30.0 bits (66), Expect = 4.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 203 DVNAMPWECVPVIVQYWMPDGPM*ICHKQ 117 D A+PW +P I + PDGP+ I H + Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = +3 Query: 315 PTSLRVPLVTPSLTNG*VKRFWRDTLTA----SFSRTVHWSSKGMEAHSVCT 458 P L++P +T ++ +++W + LTA S +RT +W SK + H + T Sbjct: 390 PEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPT 441
>CYNT_ECOLI (P0ABE9) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 30.0 bits (66), Expect = 4.3 Identities = 21/81 (25%), Positives = 33/81 (40%) Frame = -2 Query: 514 DSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTN 335 D V W+R A+ + S + + +E V L NL T+P V+ + Sbjct: 114 DHMPAVSHWLRYADSARVVNEARPHS-DLPSKAAAMVRENVIAQLANLQTHPSVRLALEE 172 Query: 334 GTLKLVGGHYDFVSGKFETWE 272 G + L G YD SG ++ Sbjct: 173 GRIALHGWVYDIESGSIAAFD 193
>CYNT_ECO57 (P0ABF0) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 30.0 bits (66), Expect = 4.3 Identities = 21/81 (25%), Positives = 33/81 (40%) Frame = -2 Query: 514 DSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTN 335 D V W+R A+ + S + + +E V L NL T+P V+ + Sbjct: 114 DHMPAVSHWLRYADSARVVNEARPHS-DLPSKAAAMVRENVIAQLANLQTHPSVRLALEE 172 Query: 334 GTLKLVGGHYDFVSGKFETWE 272 G + L G YD SG ++ Sbjct: 173 GRIALHGWVYDIESGSIAAFD 193
>EF2_METKA (Q8TXJ4) Elongation factor 2 (EF-2) [Contains: Mka fusA intein]| Length = 1257 Score = 30.0 bits (66), Expect = 4.3 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 20/98 (20%) Frame = +2 Query: 194 HSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHT-------LL 352 H+ ++ +++ +L G ++ ELAGD++V+ DE+E G T ++ Sbjct: 545 HNFAAEGFVVHNTTLSDQLLAGAGMISE--ELAGDQLVLDFDEMEQERGITIDAANVSMV 602 Query: 353 DERVGQEVL------EGHVD-------GLLLQDGALVI 427 E G+E L GHVD + DGA+V+ Sbjct: 603 HEYEGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVV 640
>I18BP_MOUSE (Q9Z0M9) Interleukin-18-binding protein precursor (IL-18BP)| (Interferon gamma-inducing factor-binding protein) Length = 191 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -3 Query: 213 SSDRCECNAMGVRTRYCPVLDAGWPDVNLP*AIEPFFLHHFLTRNCTA 70 S D C + V T+ P LD WP+ +P L+ LT +CTA Sbjct: 41 SKDPCSSWSPAVPTKQYPALDVIWPEKEVP-------LNGTLTLSCTA 81
>ACCD_CHLVU (P56293) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 411 Score = 29.3 bits (64), Expect = 7.4 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +2 Query: 188 ALHSHRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 367 ALH H++ L+Y+ + S TGG + F + GD + L G G ++++ + Sbjct: 192 ALHIHQNCAKLLYISVLTSPTTGG---VTASFAMLGDLLFAEPKALIGFAGRRVIEQTLQ 248 Query: 368 QEV 376 +++ Sbjct: 249 EQL 251
>LPQT_MYCTU (P96384) Putative lipoprotein lpqT precursor| Length = 226 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -2 Query: 322 LVGGHYDFVSGKFETWEQ*IFPTG*LRHIQTYIYQDIVRSM 200 ++ G YD + TW + +FPTG Q Y+ Q + S+ Sbjct: 163 MIQGSYDLHGRRLHTWNRIVFPTGAPPAKQRYLVQLTITSL 203
>LPSBP_PERAM (P26305) Hemolymph lipopolysaccharide-binding protein precursor| (LPS-binding protein) (LPS-BP) Length = 256 Score = 29.3 bits (64), Expect = 7.4 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -2 Query: 412 VLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFET 278 ++ E + LQNL + EG TN +G H FV G+F T Sbjct: 157 IINSEDESKVLQNLFSKVTKTEGATNNDYIFIGIHDRFVEGEFIT 201
>RPOZ_VIBPA (Q87TB0) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 90 Score = 28.9 bits (63), Expect = 9.6 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +2 Query: 200 HRSDDILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADEL-EGSVGHTLLDERVGQEV 376 +R D +LI R TGG+D L+P E V+A E+ EG + +LD R QE Sbjct: 15 NRFDLVLIAARRARQMQTGGKDALVP--EENDKPTVIALREIEEGLITKEVLDARERQEQ 72 Query: 377 LE 382 E Sbjct: 73 QE 74
>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor| (IRBP) (Interstitial retinol-binding protein) Length = 1247 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 7/43 (16%) Frame = +2 Query: 323 LEGSVGHTLLDERVGQEVLE-------GHVDGLLLQDGALVIE 430 LEG+VG+ +D GQEVL HV G L+ ALV++ Sbjct: 126 LEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLD 168 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,825,115 Number of Sequences: 219361 Number of extensions: 1601393 Number of successful extensions: 5046 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4873 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5044 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
