ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 162 6e-40
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 108 1e-23
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 106 5e-23
4DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme... 36 0.085
5DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme... 34 0.32
6DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (... 33 0.42
7DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme... 33 0.72
8BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (E... 30 6.1
9PGRC2_MOUSE (Q80UU9) Membrane associated progesterone receptor c... 29 7.9
10PGRC2_RAT (Q5XIU9) Membrane associated progesterone receptor com... 29 7.9

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  162 bits (410), Expect = 6e-40
 Identities = 81/90 (90%), Positives = 85/90 (94%), Gaps = 2/90 (2%)
 Frame = -1

Query: 544 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHP 365
           GKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF  ENVESGHP
Sbjct: 306 GKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHP 363

Query: 364 LVKEGKLANLLAWRAEEDSLEE--GAVLCE 281
           LVKEGKLANLLAWRAEE+SLEE  GA+LCE
Sbjct: 364 LVKEGKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score =  108 bits (270), Expect = 1e-23
 Identities = 54/81 (66%), Positives = 65/81 (80%)
 Frame = -1

Query: 541 KKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPL 362
           K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ +  P 
Sbjct: 314 KELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP- 372

Query: 361 VKEGKLANLLAWRAEEDSLEE 299
           VKEGKL NLL W   ED+LEE
Sbjct: 373 VKEGKLGNLLPW--GEDALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score =  106 bits (264), Expect = 5e-23
 Identities = 54/85 (63%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
 Frame = -1

Query: 544 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-H 368
           GK L AE YDCNN+VEQELP GG+L+YQSF A E+    A SP+SVFHCF+GENVES   
Sbjct: 313 GKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPP 370

Query: 367 PLVKEGKLANLLAWRAEEDSLEEGA 293
           P+ K+ KLANLL W  E D++EE A
Sbjct: 371 PMKKDYKLANLLCWEEEADAMEEKA 395



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>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 35.8 bits (81), Expect = 0.085
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -1

Query: 544 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 377
           G  LD + Y C+    Q L   G ++YQ F      A   GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352



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>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -1

Query: 538 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 383
           KLD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 544 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 377
           G  LD + Y C     Q L   G ++YQ F          GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352



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>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 32.7 bits (73), Expect = 0.72
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 538 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 383
           +LD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)|
           (BSU1-like protein 3)
          Length = 715

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
 Frame = +2

Query: 278 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 442
           S A H A        PP    G+  F D+R   L   A +AV  G     P  P G  +L
Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360

Query: 443 FI--RGKALVDEDAPAGELLLHDVVAVVCLGVELLAPR-WR 556
            +     A+ +   PAG  L H  V        LL PR W+
Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV------THLLKPRGWK 395



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>PGRC2_MOUSE (Q80UU9) Membrane associated progesterone receptor component 2|
           (Fragment)
          Length = 214

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 410 GPGRPGGDSNLFIRGKALVDEDAPAGELLLH-DVVAVVCLGVELLAPRW-RRG 562
           G G PGG      R   +    A  GE+LL+  +VA+V LG   L  RW RRG
Sbjct: 18  GDGSPGGAGATAARSSWVAALLATGGEMLLNVALVALVLLGAYRLWVRWGRRG 70



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>PGRC2_RAT (Q5XIU9) Membrane associated progesterone receptor component 2|
          Length = 217

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 410 GPGRPGGDSNLFIRGKALVDEDAPAGELLLH-DVVAVVCLGVELLAPRW-RRG 562
           G G PGG      R   +    A  GE+LL+  +VA+V LG   L  RW RRG
Sbjct: 21  GDGSPGGAGATAARSSWVAALLATGGEMLLNVALVALVLLGAYRLWVRWGRRG 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,491,071
Number of Sequences: 219361
Number of extensions: 1266143
Number of successful extensions: 3651
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3646
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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