Clone Name | rbah63c03 |
---|---|
Clone Library Name | barley_pub |
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 162 bits (410), Expect = 6e-40 Identities = 81/90 (90%), Positives = 85/90 (94%), Gaps = 2/90 (2%) Frame = -1 Query: 544 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHP 365 GKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF ENVESGHP Sbjct: 306 GKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHP 363 Query: 364 LVKEGKLANLLAWRAEEDSLEE--GAVLCE 281 LVKEGKLANLLAWRAEE+SLEE GA+LCE Sbjct: 364 LVKEGKLANLLAWRAEEESLEEGTGALLCE 393
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 108 bits (270), Expect = 1e-23 Identities = 54/81 (66%), Positives = 65/81 (80%) Frame = -1 Query: 541 KKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPL 362 K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ + P Sbjct: 314 KELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP- 372 Query: 361 VKEGKLANLLAWRAEEDSLEE 299 VKEGKL NLL W ED+LEE Sbjct: 373 VKEGKLGNLLPW--GEDALEE 391
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 106 bits (264), Expect = 5e-23 Identities = 54/85 (63%), Positives = 64/85 (75%), Gaps = 1/85 (1%) Frame = -1 Query: 544 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-H 368 GK L AE YDCNN+VEQELP GG+L+YQSF A E+ A SP+SVFHCF+GENVES Sbjct: 313 GKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPP 370 Query: 367 PLVKEGKLANLLAWRAEEDSLEEGA 293 P+ K+ KLANLL W E D++EE A Sbjct: 371 PMKKDYKLANLLCWEEEADAMEEKA 395
>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 35.8 bits (81), Expect = 0.085 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = -1 Query: 544 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 377 G LD + Y C+ Q L G ++YQ F A GSPRS C++ E+ E Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352
>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 33.9 bits (76), Expect = 0.32 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = -1 Query: 538 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 383 KLD + Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 33.5 bits (75), Expect = 0.42 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = -1 Query: 544 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 377 G LD + Y C Q L G ++YQ F GSPRS C++ E+ E Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352
>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 32.7 bits (73), Expect = 0.72 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = -1 Query: 538 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 383 +LD + Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)| (BSU1-like protein 3) Length = 715 Score = 29.6 bits (65), Expect = 6.1 Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 8/101 (7%) Frame = +2 Query: 278 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 442 S A H A PP G+ F D+R L A +AV G P P G +L Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360 Query: 443 FI--RGKALVDEDAPAGELLLHDVVAVVCLGVELLAPR-WR 556 + A+ + PAG L H V LL PR W+ Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV------THLLKPRGWK 395
>PGRC2_MOUSE (Q80UU9) Membrane associated progesterone receptor component 2| (Fragment) Length = 214 Score = 29.3 bits (64), Expect = 7.9 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +2 Query: 410 GPGRPGGDSNLFIRGKALVDEDAPAGELLLH-DVVAVVCLGVELLAPRW-RRG 562 G G PGG R + A GE+LL+ +VA+V LG L RW RRG Sbjct: 18 GDGSPGGAGATAARSSWVAALLATGGEMLLNVALVALVLLGAYRLWVRWGRRG 70
>PGRC2_RAT (Q5XIU9) Membrane associated progesterone receptor component 2| Length = 217 Score = 29.3 bits (64), Expect = 7.9 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +2 Query: 410 GPGRPGGDSNLFIRGKALVDEDAPAGELLLH-DVVAVVCLGVELLAPRW-RRG 562 G G PGG R + A GE+LL+ +VA+V LG L RW RRG Sbjct: 21 GDGSPGGAGATAARSSWVAALLATGGEMLLNVALVALVLLGAYRLWVRWGRRG 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,491,071 Number of Sequences: 219361 Number of extensions: 1266143 Number of successful extensions: 3651 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3646 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)