ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63c02 |
|---|---|
| Clone Library Name | barley_pub |
>DHGY_CUCSA (P13443) Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent| hydroxypyruvate reductase) (HPR) (GDH) Length = 382 Score = 154 bits (390), Expect = 1e-37 Identities = 72/84 (85%), Positives = 77/84 (91%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNAV 333 DVFEDEPYMKPGLA+MKNA++VPHIASASKWTREGMATLAALNVLGKIKGYPVW +PN V Sbjct: 297 DVFEDEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPVWSDPNRV 356 Query: 332 EPFLDEEATPPPACPSIVNAKQLG 261 EPFLDE +PP A PSIVNAK LG Sbjct: 357 EPFLDENVSPPAASPSIVNAKALG 380
>GYAR_THELI (Q9C4M5) Glyoxylate reductase (EC 1.1.1.26) (Glycolate reductase)| Length = 331 Score = 54.3 bits (129), Expect = 2e-07 Identities = 26/50 (52%), Positives = 33/50 (66%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DVFE+EPY L ++KN V+ PHI SA+ REGMA L A N++ KG Sbjct: 265 DVFEEEPYYNEELFKLKNVVLAPHIGSATHEAREGMAELVAKNLIAFAKG 314
>GYAR_PYRHO (O58320) Glyoxylate reductase (EC 1.1.1.26) (Glycolate reductase)| Length = 334 Score = 50.8 bits (120), Expect = 2e-06 Identities = 25/50 (50%), Positives = 32/50 (64%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DVFE+EPY L ++ N V+ PHI SAS REGMA L A N++ +G Sbjct: 265 DVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRG 314
>GYAR_PYRKO (Q5JEZ2) Glyoxylate reductase (EC 1.1.1.26) (Glycolate reductase)| Length = 333 Score = 50.1 bits (118), Expect = 4e-06 Identities = 23/45 (51%), Positives = 30/45 (66%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVL 378 DV+E+EPY L +KN V+ PHI SA+ REGMA L A N++ Sbjct: 265 DVYEEEPYYNEELFSLKNVVLAPHIGSATYGAREGMAELVARNLI 309
>GYAR_PYRAB (Q9UYR1) Glyoxylate reductase (EC 1.1.1.26) (Glycolate reductase)| Length = 335 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/50 (46%), Positives = 31/50 (62%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DV+E+EPY L + N V+ PHI SA+ REGMA L A N++ +G Sbjct: 266 DVYEEEPYYNEELFSLDNVVLTPHIGSATFGAREGMAKLVAENLIAFKRG 315
>GYAR_PYRFU (Q8U3Y2) Glyoxylate reductase (EC 1.1.1.26) (Glycolate reductase)| Length = 336 Score = 46.6 bits (109), Expect = 4e-05 Identities = 23/50 (46%), Positives = 30/50 (60%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DVFE+EPY L + N V+ PHI SA+ RE MA L A N++ +G Sbjct: 265 DVFEEEPYYNEELFSLDNVVLTPHIGSATFEAREAMAELVARNLIAFKRG 314
>TKRA_ECOLI (P37666) 2-ketogluconate reductase (EC 1.1.1.215) (2KR)| (2-ketoaldonate reductase) Length = 324 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = -1 Query: 512 DVFEDEPY-MKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DVFE EP + L M N V VPHI SA+ TR GMA A N++ ++G Sbjct: 261 DVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQG 311
>TKRA_ECO57 (P58220) 2-ketogluconate reductase (EC 1.1.1.215) (2KR)| (2-ketoaldonate reductase) Length = 324 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = -1 Query: 512 DVFEDEPY-MKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DVFE EP + L M N V VPHI SA+ TR GMA A N++ ++G Sbjct: 261 DVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQG 311
>GYAR_AERPE (Q9YAW4) Glyoxylate reductase (EC 1.1.1.26) (Glycolate reductase)| Length = 335 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%) Frame = -1 Query: 512 DVFEDEPYMKPG--LAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DVFE+EP + P L KN V+ PH ASA++ TR MA +AA N++ +G Sbjct: 266 DVFEEEP-LNPNHPLTAFKNVVLAPHAASATRETRLRMAMMAAENLVAFAQG 316
>GRHPR_HUMAN (Q9UBQ7) Glyoxylate reductase/hydroxypyruvate reductase (EC| 1.1.1.79) Length = 328 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = -1 Query: 512 DVFEDEPY-MKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPV 354 DV EP L +KN V++PHI SA+ TR M+ LAA N+L ++G P+ Sbjct: 269 DVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 322
>TKRA_ENTAG (P58000) 2-ketogluconate reductase (EC 1.1.1.215) (2KR)| (2-ketoaldonate reductase) Length = 323 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = -1 Query: 512 DVFEDEPY-MKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DVFE EP + L + N V +PHI SA+ TR GMA A N++ + G Sbjct: 260 DVFEQEPLPVDSELLTLPNVVALPHIGSATHETRYGMARDAVDNLIAALAG 310
>GRHPR_MOUSE (Q91Z53) Glyoxylate reductase/hydroxypyruvate reductase (EC| 1.1.1.79) Length = 328 Score = 38.5 bits (88), Expect = 0.011 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Frame = -1 Query: 512 DVFEDEPYMKPG--LAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DV EP + P L +KN V++PHI SA+ TR M+ LAA N+L ++G Sbjct: 269 DVTTPEP-LPPSHPLLTLKNCVILPHIGSATYKTRNTMSLLAANNLLAGLRG 319
>YEAA_SCHPO (O14075) Putative 2-hydroxyacid dehydrogenase UNK4.10 (EC 1.-.-.-)| Length = 334 Score = 38.5 bits (88), Expect = 0.011 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNV 381 DVFE+EP + PGL E + +++PH+ + S T+ M +NV Sbjct: 270 DVFEEEPKIHPGLLENEKVILLPHLGTNSLETQYKMECAVLMNV 313
>SERA_ARATH (O04130) D-3-phosphoglycerate dehydrogenase, chloroplast precursor| (EC 1.1.1.95) (3-PGDH) Length = 624 Score = 37.7 bits (86), Expect = 0.019 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = -1 Query: 512 DVFEDEPYMKPG-LAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNA 336 DVF +EP K L + +N V PH+ +++K +EG+A A V G +KG NA Sbjct: 336 DVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGELSATAVNA 395 Query: 335 --VEPFLDEEATPPPACPSIVNAKQLG 261 V P + E T P IV A++LG Sbjct: 396 PMVAPEVLSELT-----PYIVLAEKLG 417
>SERA_METTH (O27051) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 525 Score = 36.2 bits (82), Expect = 0.054 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHI-ASASKWTREGMATLAALNVLGKIKGYPVWGNPNA 336 DVFE+EP L E++N V+ PHI AS S+ R+ AA+ V +IK G P Sbjct: 256 DVFEEEPPEGSPLLELENVVLTPHIGASTSEAQRD-----AAIIVANEIKTVFQGGAPRN 310 Query: 335 V--EPFLDEEATPPPACPSIVNAKQLG 261 V P +D E T P I A+++G Sbjct: 311 VLNMPVMDSE-TYKSLKPYIELAEKMG 336
>DHGY_HYPME (P36234) Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent| hydroxypyruvate reductase) (HPR) (GDH) (Hydroxypyruvate dehydrogenase) (Glyoxylate reductase) Length = 321 Score = 34.7 bits (78), Expect = 0.16 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMA 402 DVF EP + G ++ N + PHI SA+ RE MA Sbjct: 264 DVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMA 300
>SERA_ARCFU (O29445) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 527 Score = 34.3 bits (77), Expect = 0.20 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = -1 Query: 512 DVFEDEPYMKPG-LAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPN- 339 DV+E EP L ++ N V PHIA++++ + + + A +++ KG PV N Sbjct: 254 DVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNMAKGLPVRNAVNL 313 Query: 338 -AVEP 327 ++EP Sbjct: 314 PSIEP 318
>SERA_BACSU (P35136) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 525 Score = 33.1 bits (74), Expect = 0.46 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNAV 333 DVFE EP + L + + PH+ +++K + +A + VL KG PV N Sbjct: 253 DVFEVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQFAKGLPVMSAINLP 312 Query: 332 EPFLDEEATPPP 297 DE A P Sbjct: 313 AMTKDEFAKIKP 324
>SERA_RAT (O08651) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 32.3 bits (72), Expect = 0.78 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNA 336 DVF +EP L + +N + PH+ +++K + A+ + +KG + G NA Sbjct: 259 DVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNA 317
>SERA_MOUSE (Q61753) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| (A10) Length = 532 Score = 32.3 bits (72), Expect = 0.78 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNA 336 DVF +EP L + +N + PH+ +++K + A+ + +KG + G NA Sbjct: 259 DVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNA 317
>SERA_HUMAN (O43175) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 32.3 bits (72), Expect = 0.78 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNA 336 DVF +EP L + +N + PH+ +++K + A+ + +KG + G NA Sbjct: 259 DVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNA 317
>SERA_BOVIN (Q5EAD2) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 32.3 bits (72), Expect = 0.78 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNA 336 DVF +EP L +N + PH+ +++K + AL + +KG + G NA Sbjct: 259 DVFTEEPPRDRALVNHENVISCPHLGASTKEAQSRCGEEIALQFVDMVKGKALAGVVNA 317
>YN14_YEAST (P53839) Putative 2-hydroxyacid dehydrogenase YNL274C (EC 1.-.-.-)| Length = 350 Score = 32.3 bits (72), Expect = 0.78 Identities = 23/77 (29%), Positives = 33/77 (42%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNAV 333 DVFE EP + L M + +PH+ + S TR+ M L N K + G + Sbjct: 278 DVFEYEPKISKELLSMSQVLGLPHMGTHSVETRKKMEELVVENA----KNVILTGKVLTI 333 Query: 332 EPFLDEEATPPPACPSI 282 P L E P + P + Sbjct: 334 VPELQNEDWPNESKPLV 350
>SERA_PONPY (Q5R7M2) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNA 336 DVF +EP L + +N + PH+ +++K + A+ + +KG + G NA Sbjct: 259 DVFTEEPPRGRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNA 317
>SERA_MACFA (Q60HD7) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNA 336 DVF +EP L + +N + PH+ +++K + A+ + +KG + G NA Sbjct: 259 DVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLAGVVNA 317
>NIP7_YEAST (Q08962) 60S ribosome subunit biogenesis protein NIP7| Length = 181 Score = 31.2 bits (69), Expect = 1.7 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Frame = -1 Query: 491 YMKPGLAEMKNAVVVPHIASAS----KWTREGMATL--AALNVLGKIKGYPVWGNPNAVE 330 Y+ +A++ +V P++ S K+T+ G L +L VL K Y +W PN Sbjct: 46 YVPDHVAKLATSVARPNLMSLGICLGKFTKTGKFRLHITSLTVLAKHAKYKIWIKPNGEM 105 Query: 329 PFL 321 PFL Sbjct: 106 PFL 108
>SERA_SYNY3 (P73821) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 554 Score = 30.8 bits (68), Expect = 2.3 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYP 357 DVF EP + L E N ++ PH+ ++++ + +A A + + G P Sbjct: 282 DVFAQEPLGESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVLLGLP 333
>SERA_MYCLE (O33116) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 528 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNAV 333 DVF EP L E+ VV PH+ +++ ++ T A +V + G V N Sbjct: 256 DVFATEPCTDSPLFELSQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVD 315 Query: 332 EPFLDEEATP 303 ++EE P Sbjct: 316 GGVVNEEVAP 325
>KCY_PYRFU (Q8U2L4) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 192 Score = 29.3 bits (64), Expect = 6.6 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 268 CLALTMLGQAGGGVASSSRKGSTAFGFPHTGYPLI 372 CL +T+ G AG G + RK + +GF H LI Sbjct: 5 CLVITVSGLAGSGTTTLCRKLAEHYGFKHVYAGLI 39
>SERA_METJA (Q58424) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 524 Score = 29.3 bits (64), Expect = 6.6 Identities = 13/50 (26%), Positives = 26/50 (52%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKG 363 DVFE+EP L + N + PH ++++ ++ T+ A + ++G Sbjct: 255 DVFEEEPPKDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAEQIKKVLRG 304
>SERA_MYCTU (P0A544) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 528 Score = 29.3 bits (64), Expect = 6.6 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNAV 333 DVF EP L E+ VV PH+ +++ ++ T A +V + G V N Sbjct: 256 DVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 315 Query: 332 EPFLDEEATP 303 ++EE P Sbjct: 316 GGVVNEEVAP 325
>SERA_MYCBO (P0A545) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 528 Score = 29.3 bits (64), Expect = 6.6 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = -1 Query: 512 DVFEDEPYMKPGLAEMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNAV 333 DVF EP L E+ VV PH+ +++ ++ T A +V + G V N Sbjct: 256 DVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 315 Query: 332 EPFLDEEATP 303 ++EE P Sbjct: 316 GGVVNEEVAP 325
>M4K1_MOUSE (P70218) Mitogen-activated protein kinase kinase kinase kinase 1| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 1) (MEK kinase kinase 1) (MEKKK 1) (Hematopoietic progenitor kinase) (HPK) Length = 827 Score = 29.3 bits (64), Expect = 6.6 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -1 Query: 389 LNVLGKIKGYPVWGNPNAVEPFLDEEATPPPACP----SIVNAKQLGLPSS 249 L++L K+K P G P +E DEE PPPA P S A LG+P + Sbjct: 285 LDLLDKMKN-PGKGLPVDIE---DEEPEPPPAIPRRIRSTYRASSLGIPDA 331 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,342,456 Number of Sequences: 219361 Number of extensions: 1172235 Number of successful extensions: 3774 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3650 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3774 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
