ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62m23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL63_HCMVA (P16820) Hypothetical protein UL63 30 2.1
2AMGO2_PONPY (Q5R7M3) Amphoterin-induced protein 2 precursor (AMI... 29 2.8
3AMGO2_HUMAN (Q86SJ2) Amphoterin-induced protein 2 precursor (AMI... 29 2.8
4ENGC_PROMA (Q7VEJ4) Probable GTPase engC (EC 3.6.1.-) 29 3.7

>UL63_HCMVA (P16820) Hypothetical protein UL63|
          Length = 129

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
 Frame = -2

Query: 180 HCFGFSF-SIYLSYLFLRICVCPCSC-------TNMARENMLXCECCRWLCICTYA*YXT 25
           H FG    S+Y++Y++  +C   C C         + R N    + C  LC  T++   T
Sbjct: 48  HLFGKKLISLYVTYIYYTLCTPNCRCCIRRKNSPYLYRLNFCLIDTCLELCPPTFSLCIT 107

Query: 24  IIC 16
            IC
Sbjct: 108 KIC 110



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>AMGO2_PONPY (Q5R7M3) Amphoterin-induced protein 2 precursor (AMIGO-2)|
          Length = 522

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 159 SIYLSYLFLRICVCPCSCTNMARENML 79
           SI L  L+L +  CPC C    ++NML
Sbjct: 409 SIVLVLLYLYLTPCPCKCKTKRQKNML 435



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>AMGO2_HUMAN (Q86SJ2) Amphoterin-induced protein 2 precursor (AMIGO-2)|
           (Alivin-1) (Differentially expressed in gastric
           adenocarcinomas) (DEGA)
          Length = 522

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 159 SIYLSYLFLRICVCPCSCTNMARENML 79
           SI L  L+L +  CPC C    ++NML
Sbjct: 409 SIVLVLLYLYLTPCPCKCKTKRQKNML 435



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>ENGC_PROMA (Q7VEJ4) Probable GTPase engC (EC 3.6.1.-)|
          Length = 309

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 118 TYTYS*EQIRKINGEGKPKAMSELTKLQWHFICGPSSV 231
           T+ Y    I  +NGEG  K  + L  ++   +CGPS V
Sbjct: 156 TWGYQPIPISIVNGEGIQKLSARLKSMKLGVLCGPSGV 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,410,116
Number of Sequences: 219361
Number of extensions: 614280
Number of successful extensions: 1312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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