Clone Name | rbah62m23 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 Score = 369 bits (186), Expect = 3e-99 Identities = 220/232 (94%) Strand = Plus / Minus Query: 22 tattgtntaatattatgcgtacgtgcatatacatagccaccgacagcattcacatncaag 81 |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| | || Sbjct: 830 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 771 Query: 82 catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 141 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 770 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 711 Query: 142 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 201 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 710 ataagaaagataaatggacaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 651 Query: 202 tggcactttatatgtggcccatcgtcagtgagctttttatgccttgccggac 253 |||||||||||||| ||||| | || |||||||| ||||||||||||||||| Sbjct: 650 tggcactttatatgcggcccgtggtgagtgagctgtttatgccttgccggac 599
>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase small subunit mRNA, clone pTS406, 3' end Length = 317 Score = 367 bits (185), Expect = 1e-98 Identities = 236/253 (93%), Gaps = 3/253 (1%) Strand = Plus / Minus Query: 1 aaacgtatatagttgacatattattgtntaatattatgcgtacgtgcatatacatagcca 60 ||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 301 aaacgtatatagtcgacatatt---gtataatattatgcgtccgtgcatatacatagcca 245 Query: 61 ccgacagcattcacatncaagcatgttttctcgagccatgttggtacatgaacatggaca 120 |||| ||||||||||| | |||||| |||||||||||||||| ||||||||||||||||| Sbjct: 244 ccgatagcattcacatacgagcatgctttctcgagccatgttcgtacatgaacatggaca 185 Query: 121 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 125 Query: 181 tcagagttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagcttttta 240 |||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||| Sbjct: 124 tcagagttgacaaaactgcaatggcactttatatatggcctgtcgtgagtgagctgttta 65 Query: 241 tgccttgccggac 253 |||||||||||| Sbjct: 64 ggccttgccggac 52
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC 4.1.1.39 ribulosebisphosphate carboxylase) clones 234 and 406 Length = 743 Score = 359 bits (181), Expect = 3e-96 Identities = 235/253 (92%), Gaps = 3/253 (1%) Strand = Plus / Minus Query: 1 aaacgtatatagttgacatattattgtntaatattatgcgtacgtgcatatacatagcca 60 ||||||||||||| |||||||| || ||||||||||||| ||| |||||||||||||| Sbjct: 727 aaacgtatatagtcgacatatt---gtataatattatgcgtccgttcatatacatagcca 671 Query: 61 ccgacagcattcacatncaagcatgttttctcgagccatgttggtacatgaacatggaca 120 |||| ||||||| ||| | |||||| |||||||||||||||||||||||||||||||||| Sbjct: 670 ccgatagcattctcatacgagcatgctttctcgagccatgttggtacatgaacatggaca 611 Query: 121 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 610 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 551 Query: 181 tcagagttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagcttttta 240 |||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||| Sbjct: 550 tcagagttgacaaaactgcaatggcactttatatatggcctgtcgtgagtgagctgttta 491 Query: 241 tgccttgccggac 253 |||||||||||| Sbjct: 490 ggccttgccggac 478
>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate carboxylase/oxygenase, small subunit Length = 837 Score = 339 bits (171), Expect = 3e-90 Identities = 219/233 (93%), Gaps = 2/233 (0%) Strand = Plus / Minus Query: 22 tattgtntaatattatgcgtacgtgcatatacatagccaccgacagcattcacatncaag 81 |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| | || Sbjct: 790 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 731 Query: 82 catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 141 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 730 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 671 Query: 142 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 611 Query: 202 tggcac-tttatatgtggcccatcgtcagtgagctttttatgccttgccggac 253 |||||| ||||||| |||| |||| |||||||| |||| |||||||||||| Sbjct: 610 tggcacttttatat-aggcctgtcgtgagtgagctgtttaggccttgccggac 559
>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC 4.1.1.39) (ribulosebisphosphate carboxylase, clone 512) Length = 611 Score = 309 bits (156), Expect = 2e-81 Identities = 206/223 (92%) Strand = Plus / Minus Query: 31 atattatgcgtacgtgcatatacatagccaccgacagcattcacatncaagcatgttttc 90 |||||||| | | ||||||||||||||||||||| |||||||||| | |||| | |||| Sbjct: 549 atattatgtgcatgtgcatatacatagccaccgattgcattcacatacgagcacgctttc 490 Query: 91 tcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaataagaaag 150 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 489 tcgagccatgttgttacatgaacatggacatacacatattcttaggaacaagtaagaaag 430 Query: 151 ataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 210 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 acaaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 370 Query: 211 atatgtggcccatcgtcagtgagctttttatgccttgccggac 253 ||||||||||| | || |||||||| |||| |||||||||||| Sbjct: 369 atatgtggcccgtggtgagtgagctgtttaggccttgccggac 327
>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit mRNA, complete cds Length = 816 Score = 202 bits (102), Expect = 4e-49 Identities = 204/227 (89%), Gaps = 10/227 (4%) Strand = Plus / Minus Query: 23 attgtntaatattatgcgtacgtgcatatacatagccaccgacagcattcacatncaagc 82 ||||| |||||||||| | | ||||||||||||||||||||| ||||||||||| | ||| Sbjct: 753 attgtataatattatgtgcatgtgcatatacatagccaccgatagcattcacatacgagc 694 Query: 83 atgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaa 142 ||| ||||||||| ||||||||||||||||||||| |||||| ||| |||||||| || Sbjct: 693 atgctttctcgag-catgttggtacatgaacatgggactacacacatt-ttaggaac-aa 637 Query: 143 taagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaat 202 |||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||| Sbjct: 636 taagaaagat-aatggagaaggaaaacc--aagc-atgtcagagttgac-aaactgcaat 582 Query: 203 ggcactttatatgtggcccatcgtcagtgagctttttatgccttgcc 249 ||||| |||||||| |||||||||||||||||| ||||||||||||| Sbjct: 581 ggcac-ttatatgt-gcccatcgtcagtgagctgtttatgccttgcc 537
>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence Length = 183599 Score = 52.0 bits (26), Expect = 9e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 139 caaataagaaagataaatggagaaggaaaa 168 ||||||||||||| |||||||||||||||| Sbjct: 97466 caaataagaaagaaaaatggagaaggaaaa 97437
>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12, complete sequence Length = 155592 Score = 46.1 bits (23), Expect = 0.053 Identities = 23/23 (100%) Strand = Plus / Minus Query: 104 gtacatgaacatggacatacaca 126 ||||||||||||||||||||||| Sbjct: 152158 gtacatgaacatggacatacaca 152136
>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2 (Ugt3a2), mRNA Length = 2197 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194 |||| ||||||||| ||||||||||||||| Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2, transcript variant 1, mRNA (cDNA clone MGC:37820 IMAGE:5098754), complete cds Length = 2196 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194 |||| ||||||||| ||||||||||||||| Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2, transcript variant 1, mRNA (cDNA clone MGC:37957 IMAGE:5134131), complete cds Length = 2192 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194 |||| ||||||||| ||||||||||||||| Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430112M20 product:Hypothetical protein (Hypothetical UDP-glucoronosyl and UDP-glucosyl transferase containing protein), full insert sequence Length = 2284 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194 |||| ||||||||| ||||||||||||||| Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA PROTEIN [Mus musculus]; weakly similar to UDP-Glycosyltransferase/glycogen phosphorylase, full insert sequence Length = 1723 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194 |||| ||||||||| ||||||||||||||| Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730018P11 product:hypothetical UDP-glucoronosyl and UDP-glucosyl transferase containing protein, full insert sequence Length = 2197 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194 |||| ||||||||| ||||||||||||||| Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530069C13 product:hypothetical UDP-Glycosyltransferase/glycogen phosphorylase structure containing protein, full insert sequence Length = 1353 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194 |||| ||||||||| ||||||||||||||| Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence Length = 141653 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 attcttaggaacaaataagaaagat 152 ||||||||||||||| ||||||||| Sbjct: 131901 attcttaggaacaaaaaagaaagat 131877
>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a eukaryotic translation initiation factor 3 subunit 6 interacting protein (EIF3S6IP) pseudogene, the 3' end of the ZNF11B gene for zinc finger protein 11b (KOX 2), a novel gene (FLJ23327) and two CpG Islands, complete sequence Length = 146328 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 agcaatgtcagagttgacaaa 194 ||||||||||||||||||||| Sbjct: 137861 agcaatgtcagagttgacaaa 137841
>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 221540 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 attcttaggaacaaataagaaagat 152 ||||||||||||||| ||||||||| Sbjct: 193767 attcttaggaacaaaaaagaaagat 193791
>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2 (rSkM2) gene Length = 2825 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 atgaacatggacatacacata 128 ||||||||||||||||||||| Sbjct: 1420 atgaacatggacatacacata 1400
>gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, complete sequence Length = 41406 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 gtacatgaacatggacatacacatattc 131 ||||||||||||| ||||| |||||||| Sbjct: 12032 gtacatgaacatgtacatatacatattc 12005
>gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, complete sequence Length = 45765 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 gtacatgaacatggacatacacatattc 131 ||||||||||||| ||||| |||||||| Sbjct: 41180 gtacatgaacatgtacatatacatattc 41153
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aaacccaaagcaatgtcaga 185 |||||||||||||||||||| Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 acatgaacatggacatacacatat 129 ||||||||||| |||||||||||| Sbjct: 4895 acatgaacatgaacatacacatat 4872
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 acatgaacatggacatacacatat 129 ||||||||||| |||||||||||| Sbjct: 123589 acatgaacatgaacatacacatat 123566
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 acatgaacatggacatacacatat 129 ||||||||||| |||||||||||| Sbjct: 24888607 acatgaacatgaacatacacatat 24888584
>gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, complete sequence Length = 171480 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aaataagaaagataaatgga 159 |||||||||||||||||||| Sbjct: 75761 aaataagaaagataaatgga 75742
>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase (CNI04270) partial mRNA Length = 3071 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aaacccaaagcaatgtcaga 185 |||||||||||||||||||| Sbjct: 80 aaacccaaagcaatgtcaga 99
>emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chromosome 1 Contains the TAGLN2 gene for transgelin 2, the IGSF9 gene for immunoglobulin superfamily member 9, the SLAMF9 gene for SLAM family member 9, a novel gene and three CpG islands, complete sequence Length = 80398 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaagataaatggagaaggaa 166 |||||||||||||||||||| Sbjct: 46055 aaagataaatggagaaggaa 46074
>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete sequence Length = 175757 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaaactgcaatggcacttta 211 |||||||||||||||||||| Sbjct: 166594 aaaactgcaatggcacttta 166575
>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of the DAB1 gene for disabled homolog 1 (Drosophila), complete sequence Length = 134011 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 cagagttgacaaaactgcaatggc 205 |||||||||||||||| ||||||| Sbjct: 88758 cagagttgacaaaactacaatggc 88735
>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151302 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 122 acacatattcttaggaacaaataagaaa 149 |||||||||||||| |||||| |||||| Sbjct: 9178 acacatattcttagtaacaaaaaagaaa 9151
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland Research Institute) complete sequence Length = 147560 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gaacaaataagaaagataaa 155 |||||||||||||||||||| Sbjct: 45388 gaacaaataagaaagataaa 45407
>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence Length = 208407 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aagataaatggagaaggaaa 167 |||||||||||||||||||| Sbjct: 190875 aagataaatggagaaggaaa 190894
>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence Length = 139476 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 atgaacatggacatacacatattc 131 |||||||||| ||||||||||||| Sbjct: 31202 atgaacatgggcatacacatattc 31225
>dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330038M22 product:unclassifiable, full insert sequence Length = 3845 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 104 gtacatgaacatggacatacacatattc 131 ||||||||||||| ||||| |||||||| Sbjct: 695 gtacatgaacatgtacatatacatattc 722
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gataaatggagaaggaaaac 169 |||||||||||||||||||| Sbjct: 4847879 gataaatggagaaggaaaac 4847860
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 acatgaacatggacatacacatat 129 ||||||||||| |||||||||||| Sbjct: 11682609 acatgaacatgaacatacacatat 11682586 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 acatgaacatggacatacacatat 129 ||||||||||| |||||||||||| Sbjct: 10428734 acatgaacatgaacatacacatat 10428757
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 acatgaacatggacatacacatat 129 ||||||||||| |||||||||||| Sbjct: 24979677 acatgaacatgaacatacacatat 24979654
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 agaaggaaaacccaaagcaa 178 |||||||||||||||||||| Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1026E06 Length = 162784 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 acatgaacatggacatacacatat 129 ||||||||||| |||||||||||| Sbjct: 5348 acatgaacatgaacatacacatat 5371
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005N06 Length = 140639 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 acatgaacatggacatacacatat 129 ||||||||||| |||||||||||| Sbjct: 31151 acatgaacatgaacatacacatat 31128
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120825 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gataaatggagaaggaaaac 169 |||||||||||||||||||| Sbjct: 90543 gataaatggagaaggaaaac 90562
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 agaaggaaaacccaaagcaa 178 |||||||||||||||||||| Sbjct: 55294 agaaggaaaacccaaagcaa 55275
>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence Length = 178228 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aagataaatggagaaggaaa 167 |||||||||||||||||||| Sbjct: 104567 aagataaatggagaaggaaa 104586
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gataaatggagaaggaaaac 169 |||||||||||||||||||| Sbjct: 4847860 gataaatggagaaggaaaac 4847841
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gataaatggagaaggaaaac 169 |||||||||||||||||||| Sbjct: 112081 gataaatggagaaggaaaac 112100
>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete sequence Length = 201821 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 atgaacatggacatacacat 127 |||||||||||||||||||| Sbjct: 17489 atgaacatggacatacacat 17470
>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence Length = 208713 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 104 gtacatgaacatggacatacacatattc 131 ||||||||||||| ||||| |||||||| Sbjct: 68296 gtacatgaacatgtacatatacatattc 68323 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,576,949 Number of Sequences: 3902068 Number of extensions: 2576949 Number of successful extensions: 51222 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51055 Number of HSP's gapped (non-prelim): 158 length of query: 253 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 231 effective length of database: 17,147,199,772 effective search space: 3961003147332 effective search space used: 3961003147332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)