ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62m23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 369 3e-99
2gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 367 1e-98
3emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 359 3e-96
4emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 339 3e-90
5emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 309 2e-81
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 202 4e-49
7gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, comp... 52 9e-04
8emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 46 0.053
9ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family,... 44 0.21
10gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.21
11gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.21
12dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 44 0.21
13dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.21
14dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 44 0.21
15dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.21
16gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, comp... 42 0.83
17emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 42 0.83
18gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cance... 42 0.83
19gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodi... 42 0.83
20gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, com... 40 3.3
21gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, compl... 40 3.3
22gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.3
23gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 40 3.3
24gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.3
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.3
26gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, com... 40 3.3
27ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 p... 40 3.3
28emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chr... 40 3.3
29emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on ch... 40 3.3
30emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chrom... 40 3.3
31gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Ca... 40 3.3
32gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's H... 40 3.3
33gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, com... 40 3.3
34gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 3.3
35dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary ... 40 3.3
36dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
40dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
41dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
42emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 3.3
43dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
44gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, co... 40 3.3
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.3
46emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.3
47emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 3.3
48gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, comp... 40 3.3 
>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  369 bits (186), Expect = 3e-99
 Identities = 220/232 (94%)
 Strand = Plus / Minus

                                                                       
Query: 22  tattgtntaatattatgcgtacgtgcatatacatagccaccgacagcattcacatncaag 81
           |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| | ||
Sbjct: 830 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 771

                                                                       
Query: 82  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 141
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 711

                                                                       
Query: 142 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 201
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ataagaaagataaatggacaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 651

                                                               
Query: 202 tggcactttatatgtggcccatcgtcagtgagctttttatgccttgccggac 253
           |||||||||||||| ||||| | || |||||||| |||||||||||||||||
Sbjct: 650 tggcactttatatgcggcccgtggtgagtgagctgtttatgccttgccggac 599
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>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  367 bits (185), Expect = 1e-98
 Identities = 236/253 (93%), Gaps = 3/253 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacgtatatagttgacatattattgtntaatattatgcgtacgtgcatatacatagcca 60
           ||||||||||||| ||||||||   || ||||||||||||| ||||||||||||||||||
Sbjct: 301 aaacgtatatagtcgacatatt---gtataatattatgcgtccgtgcatatacatagcca 245

                                                                       
Query: 61  ccgacagcattcacatncaagcatgttttctcgagccatgttggtacatgaacatggaca 120
           |||| ||||||||||| | |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 244 ccgatagcattcacatacgagcatgctttctcgagccatgttcgtacatgaacatggaca 185

                                                                       
Query: 121 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 125

                                                                       
Query: 181 tcagagttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagcttttta 240
           |||||||||||||||||||||||||||||||||| |||||  |||| |||||||| ||||
Sbjct: 124 tcagagttgacaaaactgcaatggcactttatatatggcctgtcgtgagtgagctgttta 65

                        
Query: 241 tgccttgccggac 253
            ||||||||||||
Sbjct: 64  ggccttgccggac 52
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>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  359 bits (181), Expect = 3e-96
 Identities = 235/253 (92%), Gaps = 3/253 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacgtatatagttgacatattattgtntaatattatgcgtacgtgcatatacatagcca 60
           ||||||||||||| ||||||||   || ||||||||||||| ||| ||||||||||||||
Sbjct: 727 aaacgtatatagtcgacatatt---gtataatattatgcgtccgttcatatacatagcca 671

                                                                       
Query: 61  ccgacagcattcacatncaagcatgttttctcgagccatgttggtacatgaacatggaca 120
           |||| ||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 670 ccgatagcattctcatacgagcatgctttctcgagccatgttggtacatgaacatggaca 611

                                                                       
Query: 121 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tacacatattcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatg 551

                                                                       
Query: 181 tcagagttgacaaaactgcaatggcactttatatgtggcccatcgtcagtgagcttttta 240
           |||||||||||||||||||||||||||||||||| |||||  |||| |||||||| ||||
Sbjct: 550 tcagagttgacaaaactgcaatggcactttatatatggcctgtcgtgagtgagctgttta 491

                        
Query: 241 tgccttgccggac 253
            ||||||||||||
Sbjct: 490 ggccttgccggac 478
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>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  339 bits (171), Expect = 3e-90
 Identities = 219/233 (93%), Gaps = 2/233 (0%)
 Strand = Plus / Minus

                                                                       
Query: 22  tattgtntaatattatgcgtacgtgcatatacatagccaccgacagcattcacatncaag 81
           |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| | ||
Sbjct: 790 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 731

                                                                       
Query: 82  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 141
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 671

                                                                       
Query: 142 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 611

                                                                
Query: 202 tggcac-tttatatgtggcccatcgtcagtgagctttttatgccttgccggac 253
           |||||| |||||||  ||||  |||| |||||||| |||| ||||||||||||
Sbjct: 610 tggcacttttatat-aggcctgtcgtgagtgagctgtttaggccttgccggac 559
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>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  309 bits (156), Expect = 2e-81
 Identities = 206/223 (92%)
 Strand = Plus / Minus

                                                                       
Query: 31  atattatgcgtacgtgcatatacatagccaccgacagcattcacatncaagcatgttttc 90
           |||||||| | | |||||||||||||||||||||  |||||||||| | |||| | ||||
Sbjct: 549 atattatgtgcatgtgcatatacatagccaccgattgcattcacatacgagcacgctttc 490

                                                                       
Query: 91  tcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaataagaaag 150
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 489 tcgagccatgttgttacatgaacatggacatacacatattcttaggaacaagtaagaaag 430

                                                                       
Query: 151 ataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 210
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acaaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 370

                                                      
Query: 211 atatgtggcccatcgtcagtgagctttttatgccttgccggac 253
           ||||||||||| | || |||||||| |||| ||||||||||||
Sbjct: 369 atatgtggcccgtggtgagtgagctgtttaggccttgccggac 327
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>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  202 bits (102), Expect = 4e-49
 Identities = 204/227 (89%), Gaps = 10/227 (4%)
 Strand = Plus / Minus

                                                                       
Query: 23  attgtntaatattatgcgtacgtgcatatacatagccaccgacagcattcacatncaagc 82
           ||||| |||||||||| | | ||||||||||||||||||||| ||||||||||| | |||
Sbjct: 753 attgtataatattatgtgcatgtgcatatacatagccaccgatagcattcacatacgagc 694

                                                                       
Query: 83  atgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaa 142
           ||| ||||||||| |||||||||||||||||||||   |||||| ||| |||||||| ||
Sbjct: 693 atgctttctcgag-catgttggtacatgaacatgggactacacacatt-ttaggaac-aa 637

                                                                       
Query: 143 taagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaat 202
           |||||||||| |||||||||||||||||  |||| |||||||||||||| ||||||||||
Sbjct: 636 taagaaagat-aatggagaaggaaaacc--aagc-atgtcagagttgac-aaactgcaat 582

                                                          
Query: 203 ggcactttatatgtggcccatcgtcagtgagctttttatgccttgcc 249
           ||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct: 581 ggcac-ttatatgt-gcccatcgtcagtgagctgtttatgccttgcc 537
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>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence
          Length = 183599

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 139   caaataagaaagataaatggagaaggaaaa 168
             ||||||||||||| ||||||||||||||||
Sbjct: 97466 caaataagaaagaaaaatggagaaggaaaa 97437
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>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 104    gtacatgaacatggacatacaca 126
              |||||||||||||||||||||||
Sbjct: 152158 gtacatgaacatggacatacaca 152136
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>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2
           (Ugt3a2), mRNA
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
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>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37820
           IMAGE:5098754), complete cds
          Length = 2196

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
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>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37957
           IMAGE:5134131), complete cds
          Length = 2192

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194
           |||| ||||||||| |||||||||||||||
Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
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>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430112M20 product:Hypothetical protein
           (Hypothetical UDP-glucoronosyl and UDP-glucosyl
           transferase containing protein), full insert sequence
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194
           |||| ||||||||| |||||||||||||||
Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
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>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA
           PROTEIN [Mus musculus]; weakly similar to
           UDP-Glycosyltransferase/glycogen phosphorylase, full
           insert sequence
          Length = 1723

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194
           |||| ||||||||| |||||||||||||||
Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
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>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730018P11 product:hypothetical
           UDP-glucoronosyl and UDP-glucosyl transferase containing
           protein, full insert sequence
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
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>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530069C13 product:hypothetical
           UDP-Glycosyltransferase/glycogen phosphorylase structure
           containing protein, full insert sequence
          Length = 1353

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 165 aaaacccaaagcaatgtcagagttgacaaa 194
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
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>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 128    attcttaggaacaaataagaaagat 152
              ||||||||||||||| |||||||||
Sbjct: 131901 attcttaggaacaaaaaagaaagat 131877
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>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
              ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
              eukaryotic translation initiation factor 3 subunit 6
              interacting protein (EIF3S6IP) pseudogene, the 3' end of
              the ZNF11B gene for zinc finger protein 11b (KOX 2), a
              novel gene (FLJ23327) and two CpG Islands, complete
              sequence
          Length = 146328

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    agcaatgtcagagttgacaaa 194
              |||||||||||||||||||||
Sbjct: 137861 agcaatgtcagagttgacaaa 137841
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>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221540

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 128    attcttaggaacaaataagaaagat 152
              ||||||||||||||| |||||||||
Sbjct: 193767 attcttaggaacaaaaaagaaagat 193791
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>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2
            (rSkM2) gene
          Length = 2825

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 108  atgaacatggacatacacata 128
            |||||||||||||||||||||
Sbjct: 1420 atgaacatggacatacacata 1400
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>gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, complete sequence
          Length = 41406

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 104   gtacatgaacatggacatacacatattc 131
             ||||||||||||| ||||| ||||||||
Sbjct: 12032 gtacatgaacatgtacatatacatattc 12005
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>gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, complete sequence
          Length = 45765

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 104   gtacatgaacatggacatacacatattc 131
             ||||||||||||| ||||| ||||||||
Sbjct: 41180 gtacatgaacatgtacatatacatattc 41153
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 166     aaacccaaagcaatgtcaga 185
               ||||||||||||||||||||
Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
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>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0024K17 map near S16403, complete sequence
          Length = 172238

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 106  acatgaacatggacatacacatat 129
            ||||||||||| ||||||||||||
Sbjct: 4895 acatgaacatgaacatacacatat 4872
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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
              map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    acatgaacatggacatacacatat 129
              ||||||||||| ||||||||||||
Sbjct: 123589 acatgaacatgaacatacacatat 123566
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 106      acatgaacatggacatacacatat 129
                ||||||||||| ||||||||||||
Sbjct: 24888607 acatgaacatgaacatacacatat 24888584
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>gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, complete sequence
          Length = 171480

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   aaataagaaagataaatgga 159
             ||||||||||||||||||||
Sbjct: 75761 aaataagaaagataaatgga 75742
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>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase
           (CNI04270) partial mRNA
          Length = 3071

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 aaacccaaagcaatgtcaga 185
           ||||||||||||||||||||
Sbjct: 80  aaacccaaagcaatgtcaga 99
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>emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chromosome 1 Contains the
             TAGLN2 gene for transgelin 2, the IGSF9 gene for
             immunoglobulin superfamily member 9, the SLAMF9 gene for
             SLAM family member 9, a novel gene and three CpG islands,
             complete sequence
          Length = 80398

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   aaagataaatggagaaggaa 166
             ||||||||||||||||||||
Sbjct: 46055 aaagataaatggagaaggaa 46074
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>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete
              sequence
          Length = 175757

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    aaaactgcaatggcacttta 211
              ||||||||||||||||||||
Sbjct: 166594 aaaactgcaatggcacttta 166575
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>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of
             the DAB1 gene for disabled homolog 1 (Drosophila),
             complete sequence
          Length = 134011

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 182   cagagttgacaaaactgcaatggc 205
             |||||||||||||||| |||||||
Sbjct: 88758 cagagttgacaaaactacaatggc 88735
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>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 151302

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 122  acacatattcttaggaacaaataagaaa 149
            |||||||||||||| |||||| ||||||
Sbjct: 9178 acacatattcttagtaacaaaaaagaaa 9151
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>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 147560

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   gaacaaataagaaagataaa 155
             ||||||||||||||||||||
Sbjct: 45388 gaacaaataagaaagataaa 45407
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>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence
          Length = 208407

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    aagataaatggagaaggaaa 167
              ||||||||||||||||||||
Sbjct: 190875 aagataaatggagaaggaaa 190894
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 108   atgaacatggacatacacatattc 131
             |||||||||| |||||||||||||
Sbjct: 31202 atgaacatgggcatacacatattc 31225
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>dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330038M22
           product:unclassifiable, full insert sequence
          Length = 3845

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 104 gtacatgaacatggacatacacatattc 131
           ||||||||||||| ||||| ||||||||
Sbjct: 695 gtacatgaacatgtacatatacatattc 722
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 150     gataaatggagaaggaaaac 169
               ||||||||||||||||||||
Sbjct: 4847879 gataaatggagaaggaaaac 4847860
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 106      acatgaacatggacatacacatat 129
                ||||||||||| ||||||||||||
Sbjct: 11682609 acatgaacatgaacatacacatat 11682586



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 106      acatgaacatggacatacacatat 129
                ||||||||||| ||||||||||||
Sbjct: 10428734 acatgaacatgaacatacacatat 10428757
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 106      acatgaacatggacatacacatat 129
                ||||||||||| ||||||||||||
Sbjct: 24979677 acatgaacatgaacatacacatat 24979654
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 159     agaaggaaaacccaaagcaa 178
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
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>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1026E06
          Length = 162784

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 106  acatgaacatggacatacacatat 129
            ||||||||||| ||||||||||||
Sbjct: 5348 acatgaacatgaacatacacatat 5371
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 106   acatgaacatggacatacacatat 129
             ||||||||||| ||||||||||||
Sbjct: 31151 acatgaacatgaacatacacatat 31128
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>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   gataaatggagaaggaaaac 169
             ||||||||||||||||||||
Sbjct: 90543 gataaatggagaaggaaaac 90562
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   agaaggaaaacccaaagcaa 178
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
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>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence
          Length = 178228

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    aagataaatggagaaggaaa 167
              ||||||||||||||||||||
Sbjct: 104567 aagataaatggagaaggaaa 104586
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 150     gataaatggagaaggaaaac 169
               ||||||||||||||||||||
Sbjct: 4847860 gataaatggagaaggaaaac 4847841
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    gataaatggagaaggaaaac 169
              ||||||||||||||||||||
Sbjct: 112081 gataaatggagaaggaaaac 112100
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>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   atgaacatggacatacacat 127
             ||||||||||||||||||||
Sbjct: 17489 atgaacatggacatacacat 17470
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>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence
          Length = 208713

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 104   gtacatgaacatggacatacacatattc 131
             ||||||||||||| ||||| ||||||||
Sbjct: 68296 gtacatgaacatgtacatatacatattc 68323


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,576,949
Number of Sequences: 3902068
Number of extensions: 2576949
Number of successful extensions: 51222
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51055
Number of HSP's gapped (non-prelim): 158
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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