ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62m22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, ... 115 2e-22
2ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
4dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
5dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
6gb|AC007567.2| Homo sapiens BAC clone CTB-36G2 from 7, complete ... 46 0.14
7gb|AF172277.1|AF172277 Homo sapiens 7q31 clones RP11-267O17 and ... 46 0.14
8gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence 42 2.1
9gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence 42 2.1
10gb|AC144636.4| Artibeus jamaicensis clone 1A13, complete sequence 42 2.1
11gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold 42 2.1
12gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh... 42 2.1
13gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, co... 42 2.1
14ref|XM_867599.1| PREDICTED: Bos taurus similar to CG6479-PA, iso... 40 8.3
15gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete... 40 8.3
16gb|AC183296.3| Pan troglodytes BAC clone CH251-352A17 from chrom... 40 8.3
17gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, com... 40 8.3
18gb|AC004457.1| Homo sapiens PAC clone RP5-1196H5 from 7, complet... 40 8.3
19emb|AL451145.15| Human DNA sequence from clone RP11-164A17 on ch... 40 8.3
20emb|AL390115.18| Human DNA sequence from clone RP11-479J7 on chr... 40 8.3
21gb|AC040933.12| Homo sapiens chromosome 17, clone CTD-2019C10, c... 40 8.3
22emb|AL109935.39|HSJ1022P6 Human DNA sequence from clone RP5-1022... 40 8.3
23emb|CR626880.9| Human DNA sequence from clone XX-HCC1954_11K06, ... 40 8.3
24gb|AC087491.5| Homo sapiens chromosome 17, clone RP11-62N23, com... 40 8.3
25gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.3
26gb|AF435975.1| Homo sapiens dopamine- and cAMP-regulated neurona... 40 8.3
27dbj|AK086716.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 8.3
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
29gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, com... 40 8.3
30dbj|AB175626.1| Trypanosoma sp. Pteromys genes for IGS, 18S rRNA... 40 8.3
31dbj|AB175625.1| Trypanosoma otospermophili genes for IGS, 18S rR... 40 8.3
32dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
33gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 40 8.3
34emb|BX572073.5| Mouse DNA sequence from clone RP23-355J14 on chr... 40 8.3
35dbj|AB190228.1| Trypanosoma otospermophili genes for IGS, 18S rR... 40 8.3
36dbj|AK119400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
37gb|AC007514.5|AC007514 Homo sapiens chromosome 14 clone BACs 209... 40 8.3
38gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25... 40 8.3
39dbj|AB095943.1| Homo sapiens mRNA for KIAA2023 protein 40 8.3
40emb|BX000452.7| Zebrafish DNA sequence from clone DKEY-12J12 in ... 40 8.3
41emb|AL935310.8| Zebrafish DNA sequence from clone CH211-235I6 in... 40 8.3
42emb|CR383665.9| Zebrafish DNA sequence from clone DKEY-3G23 in l... 40 8.3 
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3588

 Score =  115 bits (58), Expect = 2e-22
 Identities = 137/162 (84%), Gaps = 11/162 (6%)
 Strand = Plus / Minus

                                                                        
Query: 279  ttaaccgtaaccgatgtgtcctttgttcattcctcc-----caactatctgaatgcgacc 333
            ||||||||||||||||||||  ||||||||||||||     ||||||| ||| |||||||
Sbjct: 3576 ttaaccgtaaccgatgtgtctgttgttcattcctccaactccaactatttgactgcgacc 3517

                                                                        
Query: 334  aacgagcaaatagctgcaggaccagtgtaccacaaggagagaacatcttgaggtaaccat 393
            ||| |||| ||| ||| ||||||||| |||||||| ||||||||||||| |||| |||  
Sbjct: 3516 aaccagcagataactgtaggaccagtataccacaaagagagaacatctt-aggtgacc-- 3460

                                                      
Query: 394  gatatgatagatcgatcagcgcgagagcggcggctagactac 435
               |||||||| | |||||||||||||||||||||| |||||
Sbjct: 3459 ---atgatagagctatcagcgcgagagcggcggctaaactac 3421



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 562  gactagcggaagtaaaccgagacaagagggatatcgacgtcgttctcgt 610
            |||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct: 3349 gactagcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgt 3301
to top
>ref|NM_185567.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3522

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 568  cggaagtaaaccgagacaagagggatatcgacgtcgtt 605
            ||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 3356 cggaagtaaactgagacaagaggaatatcgatgtcgtt 3319
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 568      cggaagtaaaccgagacaagagggatatcgacgtcgtt 605
                ||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 29429855 cggaagtaaactgagacaagaggaatatcgatgtcgtt 29429818
to top
>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full
            insert sequence
          Length = 3522

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 568  cggaagtaaaccgagacaagagggatatcgacgtcgtt 605
            ||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 3356 cggaagtaaactgagacaagaggaatatcgatgtcgtt 3319
to top
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 568   cggaagtaaaccgagacaagagggatatcgacgtcgtt 605
             ||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 92777 cggaagtaaactgagacaagaggaatatcgatgtcgtt 92740
to top
>gb|AC007567.2| Homo sapiens BAC clone CTB-36G2 from 7, complete sequence
          Length = 187413

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 94   agaccaaaaatctgaatcaaata 116
            |||||||||||||||||||||||
Sbjct: 2163 agaccaaaaatctgaatcaaata 2185
to top
>gb|AF172277.1|AF172277 Homo sapiens 7q31 clones RP11-267O17 and RP11-256L2 including NRCAM and
             LAMB1R genes, complete sequence
          Length = 227054

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 94    agaccaaaaatctgaatcaaata 116
             |||||||||||||||||||||||
Sbjct: 81493 agaccaaaaatctgaatcaaata 81471
to top
>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence
          Length = 78195

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 372   gagaacatcttgaggtaaccatgat 396
             |||||||||||||||||| ||||||
Sbjct: 59753 gagaacatcttgaggtaatcatgat 59777
to top
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence
          Length = 213888

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 372    gagaacatcttgaggtaaccatgat 396
              |||||||||||||||||| ||||||
Sbjct: 194419 gagaacatcttgaggtaatcatgat 194443
to top
>gb|AC144636.4| Artibeus jamaicensis clone 1A13, complete sequence
          Length = 114691

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 492  gttttttatcttgctagtttt 512
            |||||||||||||||||||||
Sbjct: 3316 gttttttatcttgctagtttt 3296
to top
>gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold
          Length = 584809

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 492    gttttttatcttgctagtttt 512
              |||||||||||||||||||||
Sbjct: 327875 gttttttatcttgctagtttt 327855
to top
>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete cds
          Length = 160480

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 372    gagaacatcttgaggtaacca 392
              |||||||||||||||||||||
Sbjct: 126127 gagaacatcttgaggtaacca 126147
to top
>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf
              copia_LTR and Huck gypsy_LTR retrotransposons, complete
              sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR
              and Opie1 copia_LTR retrotransposons, complete sequence; Ji
              copia_LTR retrotransposon, complete sequence; and unknown
              protein (adh1B), cyclin H-1 (adh1C), unknown protein
              (adh1D), hypothetical protein (adh1E), and unknown protein
              (adh1F) genes, complete cds
          Length = 126039

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 372    gagaacatcttgaggtaacca 392
              |||||||||||||||||||||
Sbjct: 109458 gagaacatcttgaggtaacca 109478
to top
>ref|XM_867599.1| PREDICTED: Bos taurus similar to CG6479-PA, isoform A (LOC615723),
           partial mRNA
          Length = 449

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 aaatatcctgatggaaaaac 169
           ||||||||||||||||||||
Sbjct: 279 aaatatcctgatggaaaaac 298
to top
>gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete sequence
          Length = 170684

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   tttatctcgaggaccgacta 566
             ||||||||||||||||||||
Sbjct: 19104 tttatctcgaggaccgacta 19085
to top
>gb|AC183296.3| Pan troglodytes BAC clone CH251-352A17 from chromosome 19, complete
             sequence
          Length = 180482

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   aagctagtcttggagagcag 470
             ||||||||||||||||||||
Sbjct: 49311 aagctagtcttggagagcag 49330
to top
>gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, complete sequence
          Length = 184518

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 93    cagaccaaaaatctgaatcaaatatctc 120
             ||||||||||| | ||||||||||||||
Sbjct: 82957 cagaccaaaaaccagaatcaaatatctc 82984
to top
>gb|AC004457.1| Homo sapiens PAC clone RP5-1196H5 from 7, complete sequence
          Length = 128220

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    accaaaaatctgaatcaaat 115
             ||||||||||||||||||||
Sbjct: 21218 accaaaaatctgaatcaaat 21237
to top
>emb|AL451145.15| Human DNA sequence from clone RP11-164A17 on chromosome 6 Contains
            the 5' end of the gene for a novel protein similar to S.
            pombe Rad8 and a CpG island, complete sequence
          Length = 65811

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  accgatgtgtcctttgttca 307
            ||||||||||||||||||||
Sbjct: 6474 accgatgtgtcctttgttca 6493
to top
>emb|AL390115.18| Human DNA sequence from clone RP11-479J7 on chromosome 1 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 102533

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   ctgaatcaaatatctcaagg 124
             ||||||||||||||||||||
Sbjct: 62917 ctgaatcaaatatctcaagg 62898
to top
>gb|AC040933.12| Homo sapiens chromosome 17, clone CTD-2019C10, complete sequence
          Length = 168585

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gtcctttgttcattcctccc 315
             ||||||||||||||||||||
Sbjct: 21758 gtcctttgttcattcctccc 21777
to top
>emb|AL109935.39|HSJ1022P6 Human DNA sequence from clone RP5-1022P6 on chromosome 20 Contains the
             RPS18P1 gene for ribosomal protein S18 pseudogene 1, the
             gene for a novel protein (KIAA1434), an EIF4E (eukaryotic
             translation initiation factor 4E) pseudogene, three novel
             genes and two CpG islands, complete sequence
          Length = 178601

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   ttttttatcttgctagtttt 512
             ||||||||||||||||||||
Sbjct: 83570 ttttttatcttgctagtttt 83551
to top
>emb|CR626880.9| Human DNA sequence from clone XX-HCC1954_11K06, complete sequence
          Length = 151284

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gtcctttgttcattcctccc 315
             ||||||||||||||||||||
Sbjct: 10789 gtcctttgttcattcctccc 10808
to top
>gb|AC087491.5| Homo sapiens chromosome 17, clone RP11-62N23, complete sequence
          Length = 157216

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gtcctttgttcattcctccc 315
             ||||||||||||||||||||
Sbjct: 70556 gtcctttgttcattcctccc 70575
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 406     cgatcagcgcgagagcggcg 425
               ||||||||||||||||||||
Sbjct: 5248087 cgatcagcgcgagagcggcg 5248068
to top
>gb|AF435975.1| Homo sapiens dopamine- and cAMP-regulated neuronal phosphoprotein
             (PPP1R1B) gene, complete cds, alternatively spliced
          Length = 34765

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gtcctttgttcattcctccc 315
             ||||||||||||||||||||
Sbjct: 25158 gtcctttgttcattcctccc 25177
to top
>dbj|AK086716.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930047D01 product:similar to FUSED
            SERINE/THREONINE KINASE [Homo sapiens], full insert
            sequence
          Length = 3085

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 390  ccatgatatgatagatcgat 409
            ||||||||||||||||||||
Sbjct: 3077 ccatgatatgatagatcgat 3058
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 326      atgcgaccaacgagcaaatagctg 349
                |||||||| |||||||||||||||
Sbjct: 36339783 atgcgacccacgagcaaatagctg 36339806
to top
>gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, complete sequence
          Length = 164925

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 93     cagaccaaaaatctgaatcaaatatctc 120
              ||||||||||| | ||||||||||||||
Sbjct: 137854 cagaccaaaaaccagaatcaaatatctc 137881
to top
>dbj|AB175626.1| Trypanosoma sp. Pteromys genes for IGS, 18S rRNA, 5.8S rRNA, 28S rRNA
            and ITS1-6
          Length = 7852

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  atgatgatgcaaggtttttt 498
            ||||||||||||||||||||
Sbjct: 2861 atgatgatgcaaggtttttt 2842
to top
>dbj|AB175625.1| Trypanosoma otospermophili genes for IGS, 18S rRNA, 5.8S rRNA, 28S
            rRNA and ITS1-6
          Length = 7768

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  atgatgatgcaaggtttttt 498
            ||||||||||||||||||||
Sbjct: 2858 atgatgatgcaaggtttttt 2839
to top
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0446B05
          Length = 149145

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 326   atgcgaccaacgagcaaatagctg 349
             |||||||| |||||||||||||||
Sbjct: 89660 atgcgacccacgagcaaatagctg 89683
to top
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   gaagagcaggcctggggatg 535
             ||||||||||||||||||||
Sbjct: 62683 gaagagcaggcctggggatg 62664
to top
>emb|BX572073.5| Mouse DNA sequence from clone RP23-355J14 on chromosome X, complete
             sequence
          Length = 67137

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   tgaatcaaatatctcaaggt 125
             ||||||||||||||||||||
Sbjct: 42368 tgaatcaaatatctcaaggt 42349
to top
>dbj|AB190228.1| Trypanosoma otospermophili genes for IGS, 18S rRNA, 5.8S rRNA, 28S
            rRNA and ITS1-6
          Length = 7823

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  atgatgatgcaaggtttttt 498
            ||||||||||||||||||||
Sbjct: 2858 atgatgatgcaaggtttttt 2839
to top
>dbj|AK119400.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-E01, full
           insert sequence
          Length = 3421

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 326 atgcgaccaacgagcaaatagctg 349
           |||||||| |||||||||||||||
Sbjct: 413 atgcgacccacgagcaaatagctg 436
to top
>gb|AC007514.5|AC007514 Homo sapiens chromosome 14 clone BACs 209A20 and 396N8 map 14q31,
             complete sequence
          Length = 177720

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   acggagaaaaatatcctgatggaa 165
             ||||||||||||||||| ||||||
Sbjct: 24917 acggagaaaaatatcctcatggaa 24940
to top
>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete
             sequence
          Length = 261690

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 547   tttatctcgaggaccgacta 566
             ||||||||||||||||||||
Sbjct: 77018 tttatctcgaggaccgacta 77037
to top
>dbj|AB095943.1| Homo sapiens mRNA for KIAA2023 protein
          Length = 11657

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  accgatgtgtcctttgttca 307
            ||||||||||||||||||||
Sbjct: 5176 accgatgtgtcctttgttca 5157
to top
>emb|BX000452.7| Zebrafish DNA sequence from clone DKEY-12J12 in linkage group 14,
              complete sequence
          Length = 220420

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    aaaatatcctgatggaaaaa 168
              ||||||||||||||||||||
Sbjct: 209101 aaaatatcctgatggaaaaa 209120
to top
>emb|AL935310.8| Zebrafish DNA sequence from clone CH211-235I6 in linkage group 14,
             complete sequence
          Length = 101904

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aaaatatcctgatggaaaaa 168
             ||||||||||||||||||||
Sbjct: 57810 aaaatatcctgatggaaaaa 57791
to top
>emb|CR383665.9| Zebrafish DNA sequence from clone DKEY-3G23 in linkage group 14,
             complete sequence
          Length = 120923

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   gtcctttgttcattcctccc 315
             ||||||||||||||||||||
Sbjct: 40723 gtcctttgttcattcctccc 40704


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,946,914
Number of Sequences: 3902068
Number of extensions: 4946914
Number of successful extensions: 84310
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84175
Number of HSP's gapped (non-prelim): 134
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top