Clone Name | rbah62m20 |
---|---|
Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 688 bits (347), Expect = 0.0 Identities = 373/383 (97%), Gaps = 1/383 (0%) Strand = Plus / Minus Query: 1 gagatggcatgatctggngacatcgnacatgcatgccacctattaatgctacttgaagaa 60 ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 710 gagatggcatgatctggagacatcgtacatgcatgccacctattaat-ctacttgaagaa 652 Query: 61 gtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgccggatacaccgcc 120 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 651 gtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgcc 592 Query: 121 gaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcctc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 gaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcctc 532 Query: 181 cttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaagga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 cttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaagga 472 Query: 241 ggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtccgatggcgccgag 300 |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 471 ggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccgag 412 Query: 301 tgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgagcgcgaaggggcc 360 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 411 tgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtgagcgcgaaggggcc 352 Query: 361 gacnaggaggtagccatgggcga 383 ||| ||||||||||||||||||| Sbjct: 351 gacgaggaggtagccatgggcga 329
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 351 bits (177), Expect = 1e-93 Identities = 294/335 (87%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct: 13161381 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 13161322 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 13161321 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 13161262 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 13161261 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 13161202 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 13161201 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 13161142 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 13161141 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 13161082 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 13161081 cgcgaagggcccgacgaggaggtagccgtgggcga 13161047
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 351 bits (177), Expect = 1e-93 Identities = 294/335 (87%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct: 747 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 688 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 687 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 628 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 627 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 568 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 567 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 508 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 507 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 448 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 447 cgcgaagggcccgacgaggaggtagccgtgggcga 413
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 351 bits (177), Expect = 1e-93 Identities = 294/335 (87%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct: 697 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 638 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 637 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 578 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 577 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 518 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 517 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 458 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 457 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 398 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 397 cgcgaagggcccgacgaggaggtagccgtgggcga 363
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 351 bits (177), Expect = 1e-93 Identities = 294/335 (87%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct: 719 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 660 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 659 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 600 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 599 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 540 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 539 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 480 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 479 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 420 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 419 cgcgaagggcccgacgaggaggtagccgtgggcga 385
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 351 bits (177), Expect = 1e-93 Identities = 294/335 (87%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct: 747 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 688 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 687 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 628 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 627 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 568 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 567 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 508 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 507 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 448 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 447 cgcgaagggcccgacgaggaggtagccgtgggcga 413
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 351 bits (177), Expect = 1e-93 Identities = 294/335 (87%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct: 13115656 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 13115597 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 13115596 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 13115537 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 13115536 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 13115477 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 13115476 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 13115417 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 13115416 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 13115357 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 13115356 cgcgaagggcccgacgaggaggtagccgtgggcga 13115322
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 351 bits (177), Expect = 1e-93 Identities = 294/335 (87%) Strand = Plus / Plus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct: 169361 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 169420 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 169421 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 169480 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 169481 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 169540 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 169541 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 169600 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 169601 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 169660 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 169661 cgcgaagggcccgacgaggaggtagccgtgggcga 169695
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 351 bits (177), Expect = 1e-93 Identities = 294/335 (87%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct: 150584 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 150525 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 150524 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 150465 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 150464 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 150405 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 150404 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 150345 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 150344 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 150285 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 150284 cgcgaagggcccgacgaggaggtagccgtgggcga 150250
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 343 bits (173), Expect = 3e-91 Identities = 293/335 (87%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||| | |||| Sbjct: 702 ctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacgcc 643 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| || Sbjct: 642 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 583 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 ||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||| Sbjct: 582 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 523 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 522 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 463 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 ||||||||| | ||||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 462 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 403 Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383 ||||||||| ||||| ||||||||||| ||||||| Sbjct: 402 cgcgaagggcccgacgaggaggtagccgtgggcga 368
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 303 bits (153), Expect = 2e-79 Identities = 282/327 (86%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108 ||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| |||| Sbjct: 1498 ctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgcc 1439 Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168 ||| | |||||||||||||| || |||||||||| | ||| || ||||||||||| || Sbjct: 1438 ggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgcag 1379 Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228 |||||||||||||||||| | |||||||| |||||| ||||| |||||||| || || Sbjct: 1378 cttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtcccc 1319 Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288 |||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||| || Sbjct: 1318 ctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 1259 Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348 | ||||||||| | ||||||||| |||||||||||||| ||||||||||||| |||| Sbjct: 1258 ggcggcgccgagcgcgccggcctggccgtgcacgggcgtgctgcggagcgggcccgtgag 1199 Query: 349 cgcgaaggggccgacnaggaggtagcc 375 ||||||||| || || ||||||||||| Sbjct: 1198 cgcgaagggccccacgaggaggtagcc 1172
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 69.9 bits (35), Expect = 6e-09 Identities = 50/54 (92%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagc-acgtanaggaggaagtatgcccaga 101 ||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||| Sbjct: 108 ctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 154 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 195 ||||||||| ||||||| ||||| |||||||||||| ||||| Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 107 ccggatacaccgccgaagaagaagcctccggtgaact 143 ||||| ||||| ||||||||||| ||||||||||||| Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640
>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds Length = 812 Score = 44.1 bits (22), Expect = 0.33 Identities = 45/53 (84%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccaga 101 |||||||| | |||| |||||||| | || || ||||||||||||||||||| Sbjct: 734 ctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682
>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of photosystem I, complete cds Length = 811 Score = 44.1 bits (22), Expect = 0.33 Identities = 45/53 (84%) Strand = Plus / Minus Query: 49 ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccaga 101 |||||||| | |||| |||||||| | || || ||||||||||||||||||| Sbjct: 671 ctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619
>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl carrier protein, asparagine synthase homolog, complete cds Length = 5188 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 ccggcgcggtggacggctcgc 227 ||||||||||||||||||||| Sbjct: 2273 ccggcgcggtggacggctcgc 2293
>emb|AL669916.7| Mouse DNA sequence from clone RP23-308N3 on chromosome 11, complete sequence Length = 123478 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ctattaatgctacttgaaga 59 |||||||||||||||||||| Sbjct: 15500 ctattaatgctacttgaaga 15481
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 ttcggcggtctggagcttgtcggc 177 |||||||| ||||||||||||||| Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948
>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I subunit XI mRNA, complete cds; nuclear gene for chloroplast product Length = 1197 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ggcgtgttgcggagcgggcc 342 |||||||||||||||||||| Sbjct: 911 ggcgtgttgcggagcgggcc 892
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 tgcggagcgggccattgagc 349 |||||||||||||||||||| Sbjct: 542888 tgcggagcgggccattgagc 542869
>emb|AL844500.1|CNS08CAS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 85K17 of library RPCI-23 from chromosome 11 of strain C57Bl/6 of Mus musculus (mouse) Length = 234746 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ctattaatgctacttgaaga 59 |||||||||||||||||||| Sbjct: 143444 ctattaatgctacttgaaga 143425 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,758,955 Number of Sequences: 3902068 Number of extensions: 1758955 Number of successful extensions: 26197 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26107 Number of HSP's gapped (non-prelim): 88 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)