ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62m20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L... 688 0.0
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 351 1e-93
3dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
4dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
5dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
6dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 351 1e-93
8emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 351 1e-93
9emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 351 1e-93
10dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
11gb|AY103985.1| Zea mays PCO103239 mRNA sequence 303 2e-79
12emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment ... 70 6e-09
13dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I... 52 0.001
14emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photo... 50 0.005
15dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds 44 0.33
16dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mR... 44 0.33
17dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG... 42 1.3
18emb|AL669916.7| Mouse DNA sequence from clone RP23-308N3 on chro... 40 5.1
19gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.1
20gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast p... 40 5.1
21gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 5.1
22emb|AL844500.1|CNS08CAS Mus musculus chromosome 11 region in the... 40 5.1

>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds
          Length = 777

 Score =  688 bits (347), Expect = 0.0
 Identities = 373/383 (97%), Gaps = 1/383 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagatggcatgatctggngacatcgnacatgcatgccacctattaatgctacttgaagaa 60
           ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 710 gagatggcatgatctggagacatcgtacatgcatgccacctattaat-ctacttgaagaa 652

                                                                       
Query: 61  gtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgccggatacaccgcc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgcc 592

                                                                       
Query: 121 gaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcctc 532

                                                                       
Query: 181 cttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaagga 472

                                                                       
Query: 241 ggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtccgatggcgccgag 300
           |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 471 ggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccgag 412

                                                                       
Query: 301 tgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgagcgcgaaggggcc 360
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 411 tgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtgagcgcgaaggggcc 352

                                  
Query: 361 gacnaggaggtagccatgggcga 383
           ||| |||||||||||||||||||
Sbjct: 351 gacgaggaggtagccatgggcga 329



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  351 bits (177), Expect = 1e-93
 Identities = 294/335 (87%)
 Strand = Plus / Minus

                                                                            
Query: 49       ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
                ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 13161381 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 13161322

                                                                            
Query: 109      ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
                ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 13161321 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 13161262

                                                                            
Query: 169      cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
                ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 13161261 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 13161202

                                                                            
Query: 229      ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
                ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 13161201 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 13161142

                                                                            
Query: 289      gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
                   ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 13161141 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 13161082

                                                   
Query: 349      cgcgaaggggccgacnaggaggtagccatgggcga 383
                ||||||||| ||||| ||||||||||| |||||||
Sbjct: 13161081 cgcgaagggcccgacgaggaggtagccgtgggcga 13161047



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>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full
           insert sequence
          Length = 923

 Score =  351 bits (177), Expect = 1e-93
 Identities = 294/335 (87%)
 Strand = Plus / Minus

                                                                       
Query: 49  ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
           ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 747 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 688

                                                                       
Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
           ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 687 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 628

                                                                       
Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
           ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 627 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 568

                                                                       
Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
           ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 567 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 508

                                                                       
Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
              ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 507 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 448

                                              
Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383
           ||||||||| ||||| ||||||||||| |||||||
Sbjct: 447 cgcgaagggcccgacgaggaggtagccgtgggcga 413



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>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full
           insert sequence
          Length = 932

 Score =  351 bits (177), Expect = 1e-93
 Identities = 294/335 (87%)
 Strand = Plus / Minus

                                                                       
Query: 49  ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
           ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 697 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 638

                                                                       
Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
           ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 637 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 578

                                                                       
Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
           ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 577 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 518

                                                                       
Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
           ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 517 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 458

                                                                       
Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
              ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 457 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 398

                                              
Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383
           ||||||||| ||||| ||||||||||| |||||||
Sbjct: 397 cgcgaagggcccgacgaggaggtagccgtgggcga 363



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>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full
           insert sequence
          Length = 985

 Score =  351 bits (177), Expect = 1e-93
 Identities = 294/335 (87%)
 Strand = Plus / Minus

                                                                       
Query: 49  ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
           ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 719 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 660

                                                                       
Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
           ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 659 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 600

                                                                       
Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
           ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 599 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 540

                                                                       
Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
           ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 539 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 480

                                                                       
Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
              ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 479 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 420

                                              
Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383
           ||||||||| ||||| ||||||||||| |||||||
Sbjct: 419 cgcgaagggcccgacgaggaggtagccgtgggcga 385



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>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full
           insert sequence
          Length = 923

 Score =  351 bits (177), Expect = 1e-93
 Identities = 294/335 (87%)
 Strand = Plus / Minus

                                                                       
Query: 49  ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
           ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 747 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 688

                                                                       
Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
           ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 687 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 628

                                                                       
Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
           ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 627 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 568

                                                                       
Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
           ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 567 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 508

                                                                       
Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
              ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 507 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 448

                                              
Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383
           ||||||||| ||||| ||||||||||| |||||||
Sbjct: 447 cgcgaagggcccgacgaggaggtagccgtgggcga 413



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  351 bits (177), Expect = 1e-93
 Identities = 294/335 (87%)
 Strand = Plus / Minus

                                                                            
Query: 49       ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
                ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 13115656 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 13115597

                                                                            
Query: 109      ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
                ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 13115596 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 13115537

                                                                            
Query: 169      cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
                ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 13115536 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 13115477

                                                                            
Query: 229      ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
                ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 13115476 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 13115417

                                                                            
Query: 289      gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
                   ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 13115416 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 13115357

                                                   
Query: 349      cgcgaaggggccgacnaggaggtagccatgggcga 383
                ||||||||| ||||| ||||||||||| |||||||
Sbjct: 13115356 cgcgaagggcccgacgaggaggtagccgtgggcga 13115322



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>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 193499

 Score =  351 bits (177), Expect = 1e-93
 Identities = 294/335 (87%)
 Strand = Plus / Plus

                                                                          
Query: 49     ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
              ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 169361 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 169420

                                                                          
Query: 109    ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
              ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 169421 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 169480

                                                                          
Query: 169    cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
              ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 169481 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 169540

                                                                          
Query: 229    ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
              ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 169541 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 169600

                                                                          
Query: 289    gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
                 ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 169601 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 169660

                                                 
Query: 349    cgcgaaggggccgacnaggaggtagccatgggcga 383
              ||||||||| ||||| ||||||||||| |||||||
Sbjct: 169661 cgcgaagggcccgacgaggaggtagccgtgggcga 169695



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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178827

 Score =  351 bits (177), Expect = 1e-93
 Identities = 294/335 (87%)
 Strand = Plus / Minus

                                                                          
Query: 49     ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
              ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 150584 ctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacgcc 150525

                                                                          
Query: 109    ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
              ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 150524 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 150465

                                                                          
Query: 169    cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
              ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 150464 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 150405

                                                                          
Query: 229    ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
              ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 150404 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 150345

                                                                          
Query: 289    gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
                 ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 150344 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 150285

                                                 
Query: 349    cgcgaaggggccgacnaggaggtagccatgggcga 383
              ||||||||| ||||| ||||||||||| |||||||
Sbjct: 150284 cgcgaagggcccgacgaggaggtagccgtgggcga 150250



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>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full
           insert sequence
          Length = 964

 Score =  343 bits (173), Expect = 3e-91
 Identities = 293/335 (87%)
 Strand = Plus / Minus

                                                                       
Query: 49  ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
           ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||| | ||||
Sbjct: 702 ctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacgcc 643

                                                                       
Query: 109 ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
           ||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||
Sbjct: 642 ggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgcag 583

                                                                       
Query: 169 cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
           ||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||
Sbjct: 582 cttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcgcc 523

                                                                       
Query: 229 ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
           ||||  |||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 522 ctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 463

                                                                       
Query: 289 gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
              ||||||||| | |||||||||  ||||||| ||||||||||||||||||||  ||||
Sbjct: 462 tgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtgag 403

                                              
Query: 349 cgcgaaggggccgacnaggaggtagccatgggcga 383
           ||||||||| ||||| ||||||||||| |||||||
Sbjct: 402 cgcgaagggcccgacgaggaggtagccgtgggcga 368



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>gb|AY103985.1| Zea mays PCO103239 mRNA sequence
          Length = 1657

 Score =  303 bits (153), Expect = 2e-79
 Identities = 282/327 (86%)
 Strand = Plus / Minus

                                                                        
Query: 49   ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccagacggcgcc 108
            ||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||   ||||
Sbjct: 1498 ctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgcc 1439

                                                                        
Query: 109  ggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggag 168
            ||| |  |||||||||||||| || ||||||||||  | ||| || ||||||||||| ||
Sbjct: 1438 ggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgcag 1379

                                                                        
Query: 169  cttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgcc 228
            |||||||||||||||||| |  |||||||| ||||||   ||||| |||||||| || ||
Sbjct: 1378 cttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtcccc 1319

                                                                        
Query: 229  ctcgttgaaggaggcgacnccgtacatggtgaggnanacgctgaggatggagacgagtcc 288
            |||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||| ||
Sbjct: 1318 ctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggcc 1259

                                                                        
Query: 289  gatggcgccgagtgtgccggcctgtncgtgcacgggcgtgttgcggagcgggccattgag 348
            |  ||||||||| | |||||||||  |||||||||||||| |||||||||||||  ||||
Sbjct: 1258 ggcggcgccgagcgcgccggcctggccgtgcacgggcgtgctgcggagcgggcccgtgag 1199

                                       
Query: 349  cgcgaaggggccgacnaggaggtagcc 375
            ||||||||| || || |||||||||||
Sbjct: 1198 cgcgaagggccccacgaggaggtagcc 1172



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>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F
          Length = 162

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                 
Query: 49  ctacttgaagaagtatgggaggtcgagc-acgtanaggaggaagtatgcccaga 101
           ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||
Sbjct: 108 ctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55



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>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial
           cds
          Length = 404

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 154 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 195
           ||||||||| ||||||| ||||| |||||||||||| |||||
Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142



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>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction
           center
          Length = 834

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 107 ccggatacaccgccgaagaagaagcctccggtgaact 143
           ||||| ||||| ||||||||||| |||||||||||||
Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640



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>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds
          Length = 812

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 49  ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccaga 101
           |||||||| | |||| |||||||| |  || || |||||||||||||||||||
Sbjct: 734 ctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682



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>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of
           photosystem I, complete cds
          Length = 811

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 49  ctacttgaagaagtatgggaggtcgagcacgtanaggaggaagtatgcccaga 101
           |||||||| | |||| |||||||| |  || || |||||||||||||||||||
Sbjct: 671 ctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619



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>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for
            beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl
            carrier protein, asparagine synthase homolog, complete
            cds
          Length = 5188

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 207  ccggcgcggtggacggctcgc 227
            |||||||||||||||||||||
Sbjct: 2273 ccggcgcggtggacggctcgc 2293



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>emb|AL669916.7| Mouse DNA sequence from clone RP23-308N3 on chromosome 11, complete
             sequence
          Length = 123478

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ctattaatgctacttgaaga 59
             ||||||||||||||||||||
Sbjct: 15500 ctattaatgctacttgaaga 15481



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 154     ttcggcggtctggagcttgtcggc 177
               |||||||| |||||||||||||||
Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948



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>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I
           subunit XI mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1197

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 323 ggcgtgttgcggagcgggcc 342
           ||||||||||||||||||||
Sbjct: 911 ggcgtgttgcggagcgggcc 892



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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    tgcggagcgggccattgagc 349
              ||||||||||||||||||||
Sbjct: 542888 tgcggagcgggccattgagc 542869



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>emb|AL844500.1|CNS08CAS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
              clone 85K17 of library RPCI-23 from chromosome 11 of strain
              C57Bl/6 of Mus musculus (mouse)
          Length = 234746

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ctattaatgctacttgaaga 59
              ||||||||||||||||||||
Sbjct: 143444 ctattaatgctacttgaaga 143425


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,758,955
Number of Sequences: 3902068
Number of extensions: 1758955
Number of successful extensions: 26197
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26107
Number of HSP's gapped (non-prelim): 88
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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