ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah63b14 |
|---|---|
| Clone Library Name | barley_pub |
>DEGP2_ARATH (O82261) Protease Do-like 2, chloroplast precursor (EC 3.4.21.-)| Length = 607 Score = 111 bits (278), Expect = 1e-24 Identities = 52/93 (55%), Positives = 69/93 (74%) Frame = -3 Query: 569 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMDLSEP 390 I+NIHHLAHL+D C+DK+L FEFED+++ VL+RE + +AS I K++ IPS RS DL EP Sbjct: 515 IRNIHHLAHLIDMCKDKYLVFEFEDNYVAVLEREASNSASLCILKDYGIPSERSADLLEP 574 Query: 389 YVDTNHEVQNQGEDFGDSPVTNFELGVDCLLWA 291 YVD + Q + GDSPV+N E+G D L+WA Sbjct: 575 YVDPIDDTQALDQGIGDSPVSNLEIGFDGLVWA 607
>DEGP9_ARATH (Q9FL12) Protease Do-like 9 (EC 3.4.21.-)| Length = 592 Score = 50.4 bits (119), Expect = 3e-06 Identities = 24/57 (42%), Positives = 36/57 (63%) Frame = -3 Query: 569 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMDL 399 +KN+ LA +V+ C+D+++ F + D +VVLD + A A+ DI H IPS S DL Sbjct: 530 VKNLKGLAGMVENCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCIPSAMSDDL 586
>DGP11_ARATH (Q9LK71) Putative protease Do-like 11, mitochondrial precursor (EC| 3.4.21.-) Length = 565 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/60 (36%), Positives = 35/60 (58%) Frame = -3 Query: 569 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMDLSEP 390 +KN+ HL L++ C + L EF++ ++VL+ E A A+ I + H I SV S D+ P Sbjct: 479 VKNLKHLCELIEECSTEDLRLEFKNHKVLVLNYESAKKATLQILERHKIKSVISKDICLP 538
>DEGP4_ARATH (Q9SHZ0) Putative protease Do-like 4, mitochondrial precursor (EC| 3.4.21.-) Length = 518 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = -3 Query: 569 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMD 402 ++N+ HL LV+TC + L + E++ +VVL+ A A+S I + H IPS D Sbjct: 458 VENLKHLTELVETCWTEDLRLDLENEKVVVLNYANAKEATSLILELHRIPSANEYD 513
>DGP13_ARATH (Q9FM41) Putative protease Do-like 13 (EC 3.4.21.-)| Length = 486 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/57 (33%), Positives = 33/57 (57%) Frame = -3 Query: 569 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMDL 399 ++N+ HL L++ C K L E D +++LD + A +++S I + H +P S DL Sbjct: 416 VENLKHLCELIEKCCTKDLRLELGDGRVIILDYQFAKSSTSLILERHRVPWAMSKDL 472
>DGP12_ARATH (Q9LK70) Putative protease Do-like 12, mitochondrial precursor (EC| 3.4.21.-) Length = 499 Score = 39.7 bits (91), Expect = 0.006 Identities = 19/51 (37%), Positives = 31/51 (60%) Frame = -3 Query: 569 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPS 417 +KN+ HL L++ C K L + E+D ++VL+ E A A+ +I + H I S Sbjct: 444 VKNLKHLRELIEGCFSKDLRLDLENDKVMVLNYESAKKATFEILERHNIKS 494
>DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta)| Length = 1762 Score = 30.8 bits (68), Expect = 2.8 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = -3 Query: 440 QKEHAIPSVRSMDLSEPYVDTNHEVQNQGED 348 +K H + S R+++LS+P +D +H+ G D Sbjct: 752 EKNHTVVSPRALELSDPVLDEHHQGDQDGGD 782
>SUCC_CHLPN (Q9Z6T6) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 386 Score = 30.4 bits (67), Expect = 3.7 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -3 Query: 98 KSQNVSFINIFRGIVDC-VVAHPXAAVCTTR 9 +S V FINIF GI+DC VVA AV TR Sbjct: 309 ESVKVLFINIFGGIMDCSVVASGLVAVMETR 339
>VGLH_MEHV1 (P36337) Glycoprotein H precursor| Length = 808 Score = 30.0 bits (66), Expect = 4.8 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 11/98 (11%) Frame = +1 Query: 55 TIPRKMLM---NETFCDFNIQ------HTLKITPKLTFQH*DT--TKYNMVRLLPLSTVF 201 T P ++L+ N FNI TL I TF + DT T N++ LP+ V Sbjct: 26 TYPSQILLDMKNSPLVRFNISTRDYKDETLWIRKNSTFVYIDTAVTTANVIFYLPIGQVR 85 Query: 202 AIG*TKKPAGVITISTGVVGF*NGAIAASHAHSRQSTP 315 + K+P + S +V F N A+H + +P Sbjct: 86 QMVFFKRPISRLLTSNNLVKFINTGSYANHTFKTELSP 123
>CDKL2_PONPY (Q5R754) Cyclin-dependent kinase-like 2 (EC 2.7.11.22)| Length = 493 Score = 29.6 bits (65), Expect = 6.3 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 162 IQHGSAFATINCICHRVDEKTRRCNYHF 245 I G ATI HRVDEKT++C+ F Sbjct: 426 INSGMGTATIPIQGHRVDEKTKKCSIPF 453
>ROD1_YEAST (Q02805) Protein ROD1| Length = 837 Score = 29.6 bits (65), Expect = 6.3 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +2 Query: 449 TMRLLLLPGPTQRGSRLRIRMSRTCLDRCPLDEQGGGCSLS 571 T LL LPG ++ + L+ SRT L PL G S+S Sbjct: 685 TSSLLPLPGSSKSSNNLKRSSSRTHLSHSPLPRNNSGSSVS 725
>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)| (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced gene B protein) Length = 2715 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = -3 Query: 470 EEAVAASSDIQKEHAIPSVRSMDLSEPYVDTNHEVQNQGEDFGDSP 333 E A AASS Q E +IPS +D D + EV G +F D P Sbjct: 2340 EPATAASS--QAEKSIPSKSLLDWLRQQADYSLEVPGFGANFSDKP 2383
>SUCC_CHLCV (Q822A1) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 388 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = -3 Query: 113 VCCMLKSQNVS--FINIFRGIVDC-VVAHPXAAVCTTR 9 V +L +NV FINIF GI+DC VA AV TR Sbjct: 302 VSLVLSDENVEVLFINIFGGIMDCSAVASGLVAVMQTR 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,389,809 Number of Sequences: 219361 Number of extensions: 1838683 Number of successful extensions: 4426 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4300 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4422 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
