ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63b14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT024077.1| Zea mays clone EL01N0513D07 mRNA sequence 125 2e-25
2dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
3dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
4dbj|AK059221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
5gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 119 1e-23
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
7gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, com... 44 0.50
8gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, co... 44 0.50
9gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, comp... 44 0.50
10emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BA... 44 0.50
11dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, c... 44 0.50
12dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, ... 44 0.50
13dbj|BS000669.1| Pan troglodytes chromosome Y clone:PTB-529M03, c... 44 0.50
14dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, c... 44 0.50
15gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 44 0.50
16dbj|AP004433.1| Parazen pacificus mitochondrial DNA, complete ge... 44 0.50
17gb|BC073708.1| Xenopus laevis MGC83646 protein, mRNA (cDNA clone... 42 2.0
18gb|AE002149.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 42 2.0
19emb|Z82082.1|CEZC334 Caenorhabditis elegans Cosmid ZC334, comple... 42 2.0
20gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, comp... 40 7.8
21gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, comp... 40 7.8
22gb|AF254983.3| Homo sapiens chromosome 21 clone RP11-589M2 map p... 40 7.8
23gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosom... 40 7.8
24gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosom... 40 7.8
25gb|AC104692.1| Homo sapiens BAC clone RP11-208G20 from 7, comple... 40 7.8
26emb|AL163201.2|HS21C001 Homo sapiens chromosome 21 segment HS21C001 40 7.8
27emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chr... 40 7.8
28gb|AC106882.5| Homo sapiens BAC clone RP11-768B22 from 4, comple... 40 7.8
29dbj|AK024235.1| Homo sapiens cDNA FLJ14173 fis, clone NT2RP2002755 40 7.8
30gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, comple... 40 7.8
31dbj|AP004237.1| Proteus vulgaris plasmid Rts1 DNA, complete sequ... 40 7.8
32gb|AC113815.6| Rattus norvegicus BAC CH230-221C20 (Children's H... 40 7.8
33gb|AC090066.2| Homo sapiens chromosome 5 clone CTC-277N16, compl... 40 7.8
34emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in ... 40 7.8
35gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X... 40 7.8
36emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in ... 40 7.8
37gb|AC006475.3|AC006475 Homo sapiens PAC clone RP4-727L20 from 7q... 40 7.8
38gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, compl... 40 7.8
39emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 i... 40 7.8
40gb|AC006539.1|AC006539 Homo sapiens chromosome 19, BAC 39498 (CI... 40 7.8
41emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in... 40 7.8
42gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, comple... 40 7.8
43gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete... 40 7.8 
>gb|BT024077.1| Zea mays clone EL01N0513D07 mRNA sequence
          Length = 2174

 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Minus

                                                                        
Query: 463  gcttcttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttg 522
            |||||||| || | ||| ||||| ||||||||||||||||||||||| |||| |||||||
Sbjct: 1614 gcttcttctcgatgcaaaacaacaaggaagtcgtcttcgaattcgaacgtcaggaacttg 1555

                                                           
Query: 523  tcttgacaggtgtccactagatgagcaaggtggtggatgttctttat 569
            |||| |||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 1554 tctttacaggtgtccacaagatgagcaaggtgatggatattctttat 1508
to top
>dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E14, full
            insert sequence
          Length = 2157

 Score =  123 bits (62), Expect = 7e-25
 Identities = 139/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 408  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcggctact-gctt 466
            ||||||||||||||| || ||||| || ||| |||||||||| ||||||| || | ||||
Sbjct: 1712 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1654

                                                                        
Query: 467  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 526
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1653 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1594

                                                      
Query: 527  gacaggtgtccactagatgagcaaggtggtggatgttcttta 568
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1593 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1552
to top
>dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I18, full
            insert sequence
          Length = 2231

 Score =  123 bits (62), Expect = 7e-25
 Identities = 139/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 408  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcggctact-gctt 466
            ||||||||||||||| || ||||| || ||| |||||||||| ||||||| || | ||||
Sbjct: 1786 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1728

                                                                        
Query: 467  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 526
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1727 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1668

                                                      
Query: 527  gacaggtgtccactagatgagcaaggtggtggatgttcttta 568
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1667 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1626
to top
>dbj|AK059221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D03, full
            insert sequence
          Length = 1704

 Score =  123 bits (62), Expect = 7e-25
 Identities = 139/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 408  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcggctact-gctt 466
            ||||||||||||||| || ||||| || ||| |||||||||| ||||||| || | ||||
Sbjct: 1190 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1132

                                                                        
Query: 467  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 526
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1131 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1072

                                                      
Query: 527  gacaggtgtccactagatgagcaaggtggtggatgttcttta 568
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1071 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1030
to top
>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22,
              complete sequence
          Length = 173903

 Score =  119 bits (60), Expect = 1e-23
 Identities = 107/120 (89%), Gaps = 2/120 (1%)
 Strand = Plus / Minus

                                                                          
Query: 408    tgaccttacagaggggatggcatgctctttttggatatctgacgatgcggctact-gctt 466
              ||||||||||||||| || ||||| || ||| |||||||||| ||||||| || | ||||
Sbjct: 119336 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 119278

                                                                          
Query: 467    cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 526
              ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 119277 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 119218
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  119 bits (60), Expect = 1e-23
 Identities = 107/120 (89%), Gaps = 2/120 (1%)
 Strand = Plus / Minus

                                                                           
Query: 408     tgaccttacagaggggatggcatgctctttttggatatctgacgatgcggctact-gctt 466
               ||||||||||||||| || ||||| || ||| |||||||||| ||||||| || | ||||
Sbjct: 2672816 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 2672758

                                                                           
Query: 467     cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 526
               ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2672757 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 2672698
to top
>gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, complete sequence
          Length = 182194

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 456  ggctactgcttcttcccggtcc 477
            ||||||||||||||||||||||
Sbjct: 6414 ggctactgcttcttcccggtcc 6393
to top
>gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, complete sequence
          Length = 215114

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 456    ggctactgcttcttcccggtcc 477
              ||||||||||||||||||||||
Sbjct: 117617 ggctactgcttcttcccggtcc 117638
to top
>gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, complete sequence
          Length = 166567

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 456    ggctactgcttcttcccggtcc 477
              ||||||||||||||||||||||
Sbjct: 101549 ggctactgcttcttcccggtcc 101528
to top
>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19
          Length = 95993

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 352   tcgccttggttttggacctcatggtt 377
             |||||| |||||||||||||||||||
Sbjct: 74297 tcgcctaggttttggacctcatggtt 74272
to top
>dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, complete sequences
          Length = 152092

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 456   ggctactgcttcttcccggtcc 477
             ||||||||||||||||||||||
Sbjct: 18522 ggctactgcttcttcccggtcc 18501
to top
>dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, complete sequences
          Length = 105898

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 456   ggctactgcttcttcccggtcc 477
             ||||||||||||||||||||||
Sbjct: 22897 ggctactgcttcttcccggtcc 22876
to top
>dbj|BS000669.1| Pan troglodytes chromosome Y clone:PTB-529M03, complete sequences
          Length = 163369

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 456    ggctactgcttcttcccggtcc 477
              ||||||||||||||||||||||
Sbjct: 154530 ggctactgcttcttcccggtcc 154509
to top
>dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, complete sequences
          Length = 146625

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 456   ggctactgcttcttcccggtcc 477
             ||||||||||||||||||||||
Sbjct: 85873 ggctactgcttcttcccggtcc 85894
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 456      ggctactgcttcttcccggtcc 477
                ||||||||||||||||||||||
Sbjct: 21912477 ggctactgcttcttcccggtcc 21912456



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 456      ggctactgcttcttcccggtcc 477
                ||||||||||||||||||||||
Sbjct: 21676275 ggctactgcttcttcccggtcc 21676296
to top
>dbj|AP004433.1| Parazen pacificus mitochondrial DNA, complete genome
          Length = 16848

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 116   taaaaattacacctaaactaaccttc 141
             |||||||||| |||||||||||||||
Sbjct: 13457 taaaaattacccctaaactaaccttc 13482
to top
>gb|BC073708.1| Xenopus laevis MGC83646 protein, mRNA (cDNA clone MGC:83646
           IMAGE:5085171), complete cds
          Length = 3173

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 458 ctactgcttcttcccggtccaacac 482
           |||||||||||||| ||||||||||
Sbjct: 524 ctactgcttcttccaggtccaacac 500
to top
>gb|AE002149.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 50 of 59 of the
             complete genome
          Length = 14175

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 83    aaacattttgtgattttaaca 103
             |||||||||||||||||||||
Sbjct: 12019 aaacattttgtgattttaaca 12039
to top
>emb|Z82082.1|CEZC334 Caenorhabditis elegans Cosmid ZC334, complete sequence
          Length = 35836

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 146   attaagatacaacaaaatacaacat 170
             ||||| |||||||||||||||||||
Sbjct: 10167 attaaaatacaacaaaatacaacat 10191
to top
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence
          Length = 188992

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ttttgccactatcaactgta 198
             ||||||||||||||||||||
Sbjct: 37276 ttttgccactatcaactgta 37257
to top
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence
          Length = 178925

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ttttgccactatcaactgta 198
             ||||||||||||||||||||
Sbjct: 14086 ttttgccactatcaactgta 14067
to top
>gb|AF254983.3| Homo sapiens chromosome 21 clone RP11-589M2 map p11-q21.1, complete
              sequence
          Length = 190711

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    ttttgccactatcaactgta 198
              ||||||||||||||||||||
Sbjct: 120740 ttttgccactatcaactgta 120759
to top
>gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosome 7, complete sequence
          Length = 151249

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    gatgaatgaaacattttgtgattt 98
             |||||||||| |||||||||||||
Sbjct: 51275 gatgaatgaatcattttgtgattt 51298
to top
>gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosome 15, complete
             sequence
          Length = 175171

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    tgatgaatgaaacattttgt 93
             ||||||||||||||||||||
Sbjct: 73081 tgatgaatgaaacattttgt 73100
to top
>gb|AC104692.1| Homo sapiens BAC clone RP11-208G20 from 7, complete sequence
          Length = 148606

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ttttgccactatcaactgta 198
             ||||||||||||||||||||
Sbjct: 52084 ttttgccactatcaactgta 52103
to top
>emb|AL163201.2|HS21C001 Homo sapiens chromosome 21 segment HS21C001
          Length = 281116

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    ttttgccactatcaactgta 198
              ||||||||||||||||||||
Sbjct: 169314 ttttgccactatcaactgta 169333
to top
>emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chromosome 11 Contains the
              3' end of the Gabrb2 gene for subunit beta 2
              gamma-aminobutyric acid (GABA-A) receptor, complete
              sequence
          Length = 195923

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    cattaagatacaacaaaata 164
              ||||||||||||||||||||
Sbjct: 164575 cattaagatacaacaaaata 164594
to top
>gb|AC106882.5| Homo sapiens BAC clone RP11-768B22 from 4, complete sequence
          Length = 176692

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    atacaacatactctaaaaattaca 126
              ||||||||||| ||||||||||||
Sbjct: 155759 atacaacatacactaaaaattaca 155782
to top
>dbj|AK024235.1| Homo sapiens cDNA FLJ14173 fis, clone NT2RP2002755
          Length = 2882

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 103  atacaacatactctaaaaattaca 126
            ||||||||||| ||||||||||||
Sbjct: 2074 atacaacatacactaaaaattaca 2051
to top
>gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, complete sequence
          Length = 108451

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   catactctaaaaattacacc 128
             ||||||||||||||||||||
Sbjct: 66424 catactctaaaaattacacc 66443
to top
>dbj|AP004237.1| Proteus vulgaris plasmid Rts1 DNA, complete sequence
          Length = 217182

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   acccgcaggtgtaattacca 241
             ||||||||||||||||||||
Sbjct: 11119 acccgcaggtgtaattacca 11100
to top
>gb|AC113815.6| Rattus norvegicus  BAC CH230-221C20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 229621

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    atacaacaaaatacaacatg 171
              ||||||||||||||||||||
Sbjct: 122831 atacaacaaaatacaacatg 122850
to top
>gb|AC090066.2| Homo sapiens chromosome 5 clone CTC-277N16, complete sequence
          Length = 89420

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   catactctaaaaattacacc 128
             ||||||||||||||||||||
Sbjct: 66424 catactctaaaaattacacc 66443
to top
>emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in linkage group 25,
              complete sequence
          Length = 232304

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     ttgatgaatgaaacattttg 92
              ||||||||||||||||||||
Sbjct: 173049 ttgatgaatgaaacattttg 173030
to top
>gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X, complete sequence
          Length = 180322

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 514    aagaacttgtcttgacaggt 533
              ||||||||||||||||||||
Sbjct: 167592 aagaacttgtcttgacaggt 167573
to top
>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5,
             complete sequence
          Length = 197352

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    cattttgtgattttaacata 105
             ||||||||||||||||||||
Sbjct: 75500 cattttgtgattttaacata 75481
to top
>gb|AC006475.3|AC006475 Homo sapiens PAC clone RP4-727L20 from 7q36, complete sequence
          Length = 69684

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ttttgccactatcaactgta 198
             ||||||||||||||||||||
Sbjct: 64379 ttttgccactatcaactgta 64398
to top
>gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, complete sequence
          Length = 190527

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     tgatgaatgaaacattttgt 93
              ||||||||||||||||||||
Sbjct: 156664 tgatgaatgaaacattttgt 156645
to top
>emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 in linkage group 21,
            complete sequence
          Length = 180526

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   ttgatgaatgaaacattttg 92
            ||||||||||||||||||||
Sbjct: 2658 ttgatgaatgaaacattttg 2677
to top
>gb|AC006539.1|AC006539 Homo sapiens chromosome 19, BAC 39498 (CIT-B-26L23), complete sequence
          Length = 114739

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   actctaaaaattacacctaa 131
             ||||||||||||||||||||
Sbjct: 42221 actctaaaaattacacctaa 42240
to top
>emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in linkage group 14,
             complete sequence
          Length = 175892

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    attttgtgattttaacatac 106
             ||||||||||||||||||||
Sbjct: 85435 attttgtgattttaacatac 85416
to top
>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence
          Length = 189381

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     gatgaatgaaacattttgtgattt 98
              |||||||||| |||||||||||||
Sbjct: 144990 gatgaatgaatcattttgtgattt 145013
to top
>gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete sequence
          Length = 198813

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     gatgaatgaaacattttgtgattt 98
              |||||||||| |||||||||||||
Sbjct: 178598 gatgaatgaatcattttgtgattt 178575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,590,801
Number of Sequences: 3902068
Number of extensions: 4590801
Number of successful extensions: 93972
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93837
Number of HSP's gapped (non-prelim): 130
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top