ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah63b12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK109015.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-A06, full insert sequence Length = 956 Score = 371 bits (187), Expect = 2e-99 Identities = 271/299 (90%) Strand = Plus / Minus Query: 220 cggctcagccggtttcttggtcgaaatcgtccccgtcggattcgtcaacgttgtcgacgt 279 ||||||||||||| || |||||||| ||||| |||||||| || || ||||||||| ||| Sbjct: 354 cggctcagccggtctcctggtcgaagtcgtctccgtcggactcctcgacgttgtcggcgt 295 Query: 280 cgtcctcttccacctccgcgtcgtactcctccttcacgtcgttggtgggcttgcctatga 339 |||| || || |||| ||||||||||||||||| |||||| ||| ||||||||||||| Sbjct: 294 cgtcgtcctcggcctcggcgtcgtactcctccttgacgtcgccggttggcttgcctatga 235 Query: 340 tcaccaggttgctgttggtcttgcggatcgcgttcagcttgtcttcgaggtcggactcgg 399 |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 234 tcaccaggttactgttggtcttgcggatctcgttcagcttgtcctcgaggtcggactcgg 175 Query: 400 ccatggcgaggaggagctcgtcctcctgggtagttgcgggcacggggaggagtgtggacg 459 ||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||| Sbjct: 174 ccatggcgaggaggagctcgtcctcctgggtggtggcggggacggggagcagcgtggacg 115 Query: 460 ccggaatcagcggcggcgacggccactgccgcatcagcgccgggaatcgcagcatctcc 518 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 114 ccgggatcagcggcggcgacggccactgccgcatcagcgccgggaactgcagcatctcc 56
>dbj|AK072362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063B12, full insert sequence Length = 3594 Score = 371 bits (187), Expect = 2e-99 Identities = 271/299 (90%) Strand = Plus / Minus Query: 220 cggctcagccggtttcttggtcgaaatcgtccccgtcggattcgtcaacgttgtcgacgt 279 ||||||||||||| || |||||||| ||||| |||||||| || || ||||||||| ||| Sbjct: 412 cggctcagccggtctcctggtcgaagtcgtctccgtcggactcctcgacgttgtcggcgt 353 Query: 280 cgtcctcttccacctccgcgtcgtactcctccttcacgtcgttggtgggcttgcctatga 339 |||| || || |||| ||||||||||||||||| |||||| ||| ||||||||||||| Sbjct: 352 cgtcgtcctcggcctcggcgtcgtactcctccttgacgtcgccggttggcttgcctatga 293 Query: 340 tcaccaggttgctgttggtcttgcggatcgcgttcagcttgtcttcgaggtcggactcgg 399 |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 292 tcaccaggttactgttggtcttgcggatctcgttcagcttgtcctcgaggtcggactcgg 233 Query: 400 ccatggcgaggaggagctcgtcctcctgggtagttgcgggcacggggaggagtgtggacg 459 ||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||| Sbjct: 232 ccatggcgaggaggagctcgtcctcctgggtggtggcggggacggggagcagcgtggacg 173 Query: 460 ccggaatcagcggcggcgacggccactgccgcatcagcgccgggaatcgcagcatctcc 518 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 172 ccgggatcagcggcggcgacggccactgccgcatcagcgccgggaactgcagcatctcc 114
>dbj|AK064226.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G07, full insert sequence Length = 629 Score = 371 bits (187), Expect = 2e-99 Identities = 271/299 (90%) Strand = Plus / Minus Query: 220 cggctcagccggtttcttggtcgaaatcgtccccgtcggattcgtcaacgttgtcgacgt 279 ||||||||||||| || |||||||| ||||| |||||||| || || ||||||||| ||| Sbjct: 409 cggctcagccggtctcctggtcgaagtcgtctccgtcggactcctcgacgttgtcggcgt 350 Query: 280 cgtcctcttccacctccgcgtcgtactcctccttcacgtcgttggtgggcttgcctatga 339 |||| || || |||| ||||||||||||||||| |||||| ||| ||||||||||||| Sbjct: 349 cgtcgtcctcggcctcggcgtcgtactcctccttgacgtcgccggttggcttgcctatga 290 Query: 340 tcaccaggttgctgttggtcttgcggatcgcgttcagcttgtcttcgaggtcggactcgg 399 |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 289 tcaccaggttactgttggtcttgcggatctcgttcagcttgtcctcgaggtcggactcgg 230 Query: 400 ccatggcgaggaggagctcgtcctcctgggtagttgcgggcacggggaggagtgtggacg 459 ||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||| Sbjct: 229 ccatggcgaggaggagctcgtcctcctgggtggtggcggggacggggagcagcgtggacg 170 Query: 460 ccggaatcagcggcggcgacggccactgccgcatcagcgccgggaatcgcagcatctcc 518 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 169 ccgggatcagcggcggcgacggccactgccgcatcagcgccgggaactgcagcatctcc 111
>gb|AY108044.1| Zea mays PCO134708 mRNA sequence Length = 647 Score = 250 bits (126), Expect = 4e-63 Identities = 249/290 (85%) Strand = Plus / Minus Query: 228 ccggtttcttggtcgaaatcgtccccgtcggattcgtcaacgttgtcgacgtcgtcctct 287 ||||| || |||||||| ||||| ||||| || || || |||||||| | ||||| || Sbjct: 388 ccggtctcctggtcgaagtcgtcgccgtcagactcctcgacgttgtctgcatcgtcgtcc 329 Query: 288 tccacctccgcgtcgtactcctccttcacgtcgttggtgggcttgcctatgatcaccagg 347 |||||||| ||||||||||||||||| |||| |||||||| || ||||| |||||| Sbjct: 328 tccacctcagcgtcgtactcctccttggtgtcgcccgtgggcttcccgatgataaccagg 269 Query: 348 ttgctgttggtcttgcggatcgcgttcagcttgtcttcgaggtcggactcggccatggcg 407 | |||||||||||| |||||| |||||||||| || |||||||||||||||||||||| | Sbjct: 268 tggctgttggtcttccggatctcgttcagcttatcctcgaggtcggactcggccatggag 209 Query: 408 aggaggagctcgtcctcctgggtagttgcgggcacggggaggagtgtggacgccggaatc 467 ||||| |||||||||||||||| || || ||||||||||| || ||||||||||| ||| Sbjct: 208 aggagaagctcgtcctcctgggaggtggccggcacggggagcagcgtggacgccgggatc 149 Query: 468 agcggcggcgacggccactgccgcatcagcgccgggaatcgcagcatctc 517 |||| |||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 148 agcgccggcgatggccactgccgcatcagcgccgggaactgcagcatctc 99
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 210 bits (106), Expect = 4e-51 Identities = 133/142 (93%) Strand = Plus / Plus Query: 377 cttgtcttcgaggtcggactcggccatggcgaggaggagctcgtcctcctgggtagttgc 436 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 22995775 cttgtcctcgaggtcggactcggccatggcgaggaggagctcgtcctcctgggtggtggc 22995834 Query: 437 gggcacggggaggagtgtggacgccggaatcagcggcggcgacggccactgccgcatcag 496 ||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 22995835 ggggacggggagcagcgtggacgccgggatcagcggcggcgacggccactgccgcatcag 22995894 Query: 497 cgccgggaatcgcagcatctcc 518 ||||||||| ||||||||||| Sbjct: 22995895 cgccgggaactgcagcatctcc 22995916 Score = 165 bits (83), Expect = 2e-37 Identities = 140/159 (88%) Strand = Plus / Plus Query: 220 cggctcagccggtttcttggtcgaaatcgtccccgtcggattcgtcaacgttgtcgacgt 279 ||||||||||||| || |||||||| ||||| |||||||| || || ||||||||| ||| Sbjct: 22995499 cggctcagccggtctcctggtcgaagtcgtctccgtcggactcctcgacgttgtcggcgt 22995558 Query: 280 cgtcctcttccacctccgcgtcgtactcctccttcacgtcgttggtgggcttgcctatga 339 |||| || || |||| ||||||||||||||||| |||||| ||| ||||||||||||| Sbjct: 22995559 cgtcgtcctcggcctcggcgtcgtactcctccttgacgtcgccggttggcttgcctatga 22995618 Query: 340 tcaccaggttgctgttggtcttgcggatcgcgttcagct 378 |||||||||| |||||||||||||||||| ||||||||| Sbjct: 22995619 tcaccaggttactgttggtcttgcggatctcgttcagct 22995657
>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1067_B01 Length = 100525 Score = 210 bits (106), Expect = 4e-51 Identities = 133/142 (93%) Strand = Plus / Plus Query: 377 cttgtcttcgaggtcggactcggccatggcgaggaggagctcgtcctcctgggtagttgc 436 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 20172 cttgtcctcgaggtcggactcggccatggcgaggaggagctcgtcctcctgggtggtggc 20231 Query: 437 gggcacggggaggagtgtggacgccggaatcagcggcggcgacggccactgccgcatcag 496 ||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 20232 ggggacggggagcagcgtggacgccgggatcagcggcggcgacggccactgccgcatcag 20291 Query: 497 cgccgggaatcgcagcatctcc 518 ||||||||| ||||||||||| Sbjct: 20292 cgccgggaactgcagcatctcc 20313 Score = 165 bits (83), Expect = 2e-37 Identities = 140/159 (88%) Strand = Plus / Plus Query: 220 cggctcagccggtttcttggtcgaaatcgtccccgtcggattcgtcaacgttgtcgacgt 279 ||||||||||||| || |||||||| ||||| |||||||| || || ||||||||| ||| Sbjct: 19896 cggctcagccggtctcctggtcgaagtcgtctccgtcggactcctcgacgttgtcggcgt 19955 Query: 280 cgtcctcttccacctccgcgtcgtactcctccttcacgtcgttggtgggcttgcctatga 339 |||| || || |||| ||||||||||||||||| |||||| ||| ||||||||||||| Sbjct: 19956 cgtcgtcctcggcctcggcgtcgtactcctccttgacgtcgccggttggcttgcctatga 20015 Query: 340 tcaccaggttgctgttggtcttgcggatcgcgttcagct 378 |||||||||| |||||||||||||||||| ||||||||| Sbjct: 20016 tcaccaggttactgttggtcttgcggatctcgttcagct 20054
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 210 bits (106), Expect = 4e-51 Identities = 133/142 (93%) Strand = Plus / Plus Query: 377 cttgtcttcgaggtcggactcggccatggcgaggaggagctcgtcctcctgggtagttgc 436 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 115577 cttgtcctcgaggtcggactcggccatggcgaggaggagctcgtcctcctgggtggtggc 115636 Query: 437 gggcacggggaggagtgtggacgccggaatcagcggcggcgacggccactgccgcatcag 496 ||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 115637 ggggacggggagcagcgtggacgccgggatcagcggcggcgacggccactgccgcatcag 115696 Query: 497 cgccgggaatcgcagcatctcc 518 ||||||||| ||||||||||| Sbjct: 115697 cgccgggaactgcagcatctcc 115718 Score = 165 bits (83), Expect = 2e-37 Identities = 140/159 (88%) Strand = Plus / Plus Query: 220 cggctcagccggtttcttggtcgaaatcgtccccgtcggattcgtcaacgttgtcgacgt 279 ||||||||||||| || |||||||| ||||| |||||||| || || ||||||||| ||| Sbjct: 115301 cggctcagccggtctcctggtcgaagtcgtctccgtcggactcctcgacgttgtcggcgt 115360 Query: 280 cgtcctcttccacctccgcgtcgtactcctccttcacgtcgttggtgggcttgcctatga 339 |||| || || |||| ||||||||||||||||| |||||| ||| ||||||||||||| Sbjct: 115361 cgtcgtcctcggcctcggcgtcgtactcctccttgacgtcgccggttggcttgcctatga 115420 Query: 340 tcaccaggttgctgttggtcttgcggatcgcgttcagct 378 |||||||||| |||||||||||||||||| ||||||||| Sbjct: 115421 tcaccaggttactgttggtcttgcggatctcgttcagct 115459
>emb|CR925725.10| Zebrafish DNA sequence from clone DKEYP-1D6 in linkage group 10, complete sequence Length = 171074 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 348 ttgctgttggtcttgcggatcg 369 |||||||||||||||||||||| Sbjct: 76745 ttgctgttggtcttgcggatcg 76766
>gb|AF223462.1|AF223462 Synechococcus PCC7918 CpcB (cpcB) and CpcA (cpcA) genes, partial cds Length = 465 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 462 ggaatcagcggcggcgacggcc 483 |||||||||||||||||||||| Sbjct: 352 ggaatcagcggcggcgacggcc 331
>gb|AF223443.1|AF223443 Synechococcus sp. PS681 CpcB (cpcB) and CpcA (cpcA) genes, partial cds Length = 470 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 462 ggaatcagcggcggcgacggcc 483 |||||||||||||||||||||| Sbjct: 321 ggaatcagcggcggcgacggcc 300
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0008E07, complete sequence Length = 146679 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 ggaatcagcggcggcgacggc 482 ||||||||||||||||||||| Sbjct: 103829 ggaatcagcggcggcgacggc 103849
>ref|XM_753397.1| Ustilago maydis 521 hypothetical protein (UM02343.1) partial mRNA Length = 2229 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gtcgacgtcgtcctcttccacctcc 296 |||| |||||||||||||||||||| Sbjct: 2214 gtcgtcgtcgtcctcttccacctcc 2190
>gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complete sequence Length = 211680 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 gagcctgggggagccggacgg 222 ||||||||||||||||||||| Sbjct: 198553 gagcctgggggagccggacgg 198533
>emb|CR643565.2|CNS0EVJN Tetraodon nigroviridis full-length cDNA Length = 1279 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 ttgcggatcgcgttcagcttg 380 ||||||||||||||||||||| Sbjct: 282 ttgcggatcgcgttcagcttg 262
>emb|CR635850.1|CNS0EPLC Tetraodon nigroviridis full-length cDNA Length = 1276 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 ttgcggatcgcgttcagcttg 380 ||||||||||||||||||||| Sbjct: 288 ttgcggatcgcgttcagcttg 268
>gb|AC090824.6| Homo sapiens chromosome 17, clone CTD-2532B14, complete sequence Length = 187161 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 aggccaacatattgggactgg 202 ||||||||||||||||||||| Sbjct: 63414 aggccaacatattgggactgg 63394
>gb|AC025505.11| Homo sapiens, clone RP11-651N3, complete sequence Length = 166426 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 aggccaacatattgggactgg 202 ||||||||||||||||||||| Sbjct: 58375 aggccaacatattgggactgg 58395
>gb|AF223465.1|AF223465 Synechococcus PCC9005 CpcB (cpcB) and CpcA (cpcA) genes, partial cds Length = 468 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 ggaatcagcggcggcgacggc 482 ||||||||||||||||||||| Sbjct: 361 ggaatcagcggcggcgacggc 341
>gb|AF223455.1|AF223455 Synechococcus sp. PS685 CpcB (cpcB) and CpcA (cpcA) genes, partial cds Length = 402 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 ggaatcagcggcggcgacggc 482 ||||||||||||||||||||| Sbjct: 313 ggaatcagcggcggcgacggc 293
>gb|AF223428.1|AF223428 Synechococcus sp. PS680 CpcB (cpcB) and CpcA (cpcA) genes, partial cds Length = 514 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 ggaatcagcggcggcgacggc 482 ||||||||||||||||||||| Sbjct: 359 ggaatcagcggcggcgacggc 339
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 ggaatcagcggcggcgacggc 482 ||||||||||||||||||||| Sbjct: 12336351 ggaatcagcggcggcgacggc 12336371
>gb|U76895.1|TAU76895 Triticum aestivum beta-tubulin 4 (Tubb4) mRNA, complete cds Length = 1866 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 282 tcctcttccacctccgcgtcgtactcctc 310 ||||||||| ||||| ||||||||||||| Sbjct: 1409 tcctcttcctcctcctcgtcgtactcctc 1381
>gb|L27212.1|HSBBICP Bovine herpesvirus type 1 transrepressor protein (BICP22) gene, complete cds Length = 3210 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cgtcctcttccacctccgcgtcgt 303 ||||||||||||||||| |||||| Sbjct: 2369 cgtcctcttccacctcctcgtcgt 2392
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 470 cggcggcgacggccactgccgcatcagcgccg 501 |||||||||||||||| |||| ||| |||||| Sbjct: 4150129 cggcggcgacggccacagccggatcggcgccg 4150098
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 cgtcctcttccacctccgcgtcgt 303 ||||||||||||||||| |||||| Sbjct: 124825 cgtcctcttccacctcctcgtcgt 124802 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cgtcctcttccacctccgcgtcgt 303 ||||||||||||||||| |||||| Sbjct: 113393 cgtcctcttccacctcctcgtcgt 113416
>emb|X76943.1|BHVBICP22 Bovine herpesvirus type 1 BICP22 gene Length = 3210 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cgtcctcttccacctccgcgtcgt 303 ||||||||||||||||| |||||| Sbjct: 2369 cgtcctcttccacctcctcgtcgt 2392
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 470 cggcggcgacggccactgccgcatcagcgccg 501 |||||||||||||||| |||| ||| |||||| Sbjct: 340639 cggcggcgacggccacagccggatcggcgccg 340608
>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 14/14 Length = 278492 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 470 cggcggcgacggccactgccgcatcagcgccg 501 |||||||||||||||| |||| ||| |||||| Sbjct: 28275 cggcggcgacggccacagccggatcggcgccg 28244
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gtacagattgctttgcagaa 181 |||||||||||||||||||| Sbjct: 1215487 gtacagattgctttgcagaa 1215468
>gb|AC016134.7| Homo sapiens chromosome 15 clone RP11-380D11 map 15q14, complete sequence Length = 170695 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 gaatcagcggcggcgacggc 482 |||||||||||||||||||| Sbjct: 54771 gaatcagcggcggcgacggc 54790
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 tcttgcggatcgcgttcagc 377 |||||||||||||||||||| Sbjct: 1452333 tcttgcggatcgcgttcagc 1452314
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cccgtcggattcgtcaacgt 270 |||||||||||||||||||| Sbjct: 2532819 cccgtcggattcgtcaacgt 2532838
>gb|AC140301.3| Mus musculus BAC clone RP23-435M8 from 5, complete sequence Length = 197633 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 agcaaagtaaagtatgatagcttg 105 ||||||||| |||||||||||||| Sbjct: 112065 agcaaagtagagtatgatagcttg 112042
>dbj|AB209431.1| Homo sapiens mRNA for TYRO3 protein tyrosine kinase variant protein Length = 3059 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 gaatcagcggcggcgacggc 482 |||||||||||||||||||| Sbjct: 1 gaatcagcggcggcgacggc 20 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,969,917 Number of Sequences: 3902068 Number of extensions: 3969917 Number of successful extensions: 86281 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85709 Number of HSP's gapped (non-prelim): 571 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
