>Y2093_MYCBO (P0A5G2) Hypothetical protein Mb2093c|
          Length = 407

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 135 PGVDEHVHRFELWLYTSPISTVHACTSSSWYHFSPARAAR 254
           P  D    ++  WLY  PI+ + A T+++W  F P  + R
Sbjct: 6   PRADIVSRQYHRWLYPHPIADLEAWTTANWEWFDPVHSHR 45

>Y2067_MYCTU (P0A5G1) Hypothetical protein Rv2067c/MT2127|
          Length = 407

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 135 PGVDEHVHRFELWLYTSPISTVHACTSSSWYHFSPARAAR 254
           P  D    ++  WLY  PI+ + A T+++W  F P  + R
Sbjct: 6   PRADIVSRQYHRWLYPHPIADLEAWTTANWEWFDPVHSHR 45

>YE30_HELPJ (Q9ZJI6) Hypothetical UPF0036 protein jhp_1323|
          Length = 692

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +2

Query: 38  IYTCPAHMSILGSQKDQTFLKRYYYYY*CILFTRCR*ACASF*IMALYITH 190
           +Y  P  + ++GS+ D+  LK+Y  Y+  I+  RC  +   F I  ++ITH
Sbjct: 229 LYGTPLSLGLIGSKFDEHGLKKYRSYF-KIVEKRCPISVGEFIIEWIHITH 278

>Y1430_HELPY (P56185) Hypothetical UPF0036 protein HP1430|
          Length = 689

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +2

Query: 38  IYTCPAHMSILGSQKDQTFLKRYYYYY*CILFTRCR*ACASF*IMALYITH 190
           +Y  P  + ++GS+ D+  LK+Y  Y+  I+  RC  +   F I  ++ITH
Sbjct: 226 LYGTPLSLGLIGSKFDEHGLKKYRSYF-KIVEKRCPISVGEFIIEWIHITH 275

>GBRA3_HUMAN (P34903) Gamma-aminobutyric-acid receptor alpha-3 subunit precursor|
           (GABA(A) receptor)
          Length = 492

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = +1

Query: 355 FMYLTSGAXGSAMACGTLRTSPAGAFLS*EPPT*G*VATE*GTYGHISXV------VFPV 516
           F  ++ GA  SA +  T+  SP   ++   P       TE  TY  +S V      +FPV
Sbjct: 413 FSTISKGAAPSASSTPTIIASPKATYVQDSP-------TETKTYNSVSKVDKISRIIFPV 465

Query: 517 RFTLASTLXGXTY 555
            F + + +   TY
Sbjct: 466 LFAIFNLVYWATY 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,806,812
Number of Sequences: 219361
Number of extensions: 1509455
Number of successful extensions: 3079
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3079
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)