ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah63b08 |
|---|---|
| Clone Library Name | barley_pub |
>DEOB_MYCPU (Q98QT4) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 395 Score = 32.3 bits (72), Expect = 0.81 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 294 IVCTDHGNVLHFP-QLQTWESL*LVPNAWCANSQLLRNPDSVTDLSTIGTMSWIIRRNYA 470 I+ DHGN FP T E+L L+ S+ +NP + L +GT I+ RN+ Sbjct: 326 IITADHGNDPTFPGSSHTREALPLI-----VYSKAFKNPSYLKTLLGLGTSGNIVARNFG 380 Query: 471 MSPIGLG 491 + I G Sbjct: 381 LKTIETG 387
>NU3M_DINSE (O79553) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH| dehydrogenase subunit 3) Length = 114 Score = 32.0 bits (71), Expect = 1.1 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +1 Query: 91 LPAINLQPTLWHFNTHKHSTTTLHELLFVTIITKKTMPEWVR 216 L + L PT W NT+ +TT L + +TI+T + EW++ Sbjct: 66 LEIVLLLPTPWSMNTNPSNTTILLITMLLTILTLGLLYEWLQ 107
>ABP1_RAT (P36633) Amiloride-sensitive amine oxidase [copper-containing]| precursor (EC 1.4.3.6) (Diamine oxidase) (DAO) (Amiloride-binding protein) (ABP) (Histaminase) Length = 746 Score = 30.4 bits (67), Expect = 3.1 Identities = 21/87 (24%), Positives = 37/87 (42%) Frame = +3 Query: 195 DDARMGAAHGLQQKWHACRKISSGFFMLLQGWAIVCTDHGNVLHFPQLQTWESL*LVPNA 374 D A G A G ++ W ++ G+F+ G I+ DHG+ +Q W V Sbjct: 186 DVAPRGVASGQRRSWFIVQRYVEGYFLHPTGLEIL-LDHGST----DVQDWR----VEQL 236 Query: 375 WCANSQLLRNPDSVTDLSTIGTMSWII 455 W N + NP+ + +G + ++ Sbjct: 237 W-YNGKFYNNPEELARKYAVGEVDTVV 262
>VLDLR_RAT (P98166) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 4.0 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +2 Query: 284 GVGNCLHRPWQCSTFPSASDMGISVTC 364 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_RABIT (P35953) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 4.0 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +2 Query: 284 GVGNCLHRPWQCSTFPSASDMGISVTC 364 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_MOUSE (P98156) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 4.0 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +2 Query: 284 GVGNCLHRPWQCSTFPSASDMGISVTC 364 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_HUMAN (P98155) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 4.0 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +2 Query: 284 GVGNCLHRPWQCSTFPSASDMGISVTC 364 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>NU3M_MYXGL (Q9G2X1) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH| dehydrogenase subunit 3) Length = 115 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +1 Query: 91 LPAINLQPTLWHFNTHKHSTTTLHELLFVTIITKKTMPEWVR 216 L I L P W N+ HS + +FV I+T + EW++ Sbjct: 67 LEIILLFPLAWALNSQSHSNAIILASVFVIILTLGLIYEWLK 108
>VMAT_VSVSJ (P03519) Matrix protein| Length = 229 Score = 29.6 bits (65), Expect = 5.3 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 73 TRSAYVLPAINLQPTLW-HFNTHKHSTTTLHELLFVTIITKKTMPEWV 213 T + Y ++ P +W HFN+ K S L+F I+ KK WV Sbjct: 174 TMTIYDDESLEAAPMIWDHFNSSKFSDFREKALMFGLIVEKKASGAWV 221
>VLDLR_CHICK (P98165) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) (Vitellogenin receptor) (VTG receptor) Length = 863 Score = 29.6 bits (65), Expect = 5.3 Identities = 9/27 (33%), Positives = 13/27 (48%) Frame = +2 Query: 284 GVGNCLHRPWQCSTFPSASDMGISVTC 364 G G C+H+ W+C P D + C Sbjct: 265 GSGECIHKKWRCDGDPDCKDGSDEINC 291
>NFX1_HUMAN (Q12986) Transcriptional repressor NF-X1 (EC 6.3.2.-) (Nuclear| transcription factor, X box-binding, 1) Length = 1104 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Frame = -2 Query: 331 GKCRTLPWSVQTIAHPCKSM---KKPDDIFLHACHFCCNPCAAP 209 GK + WS I H C + K+P H+C+ C+P P Sbjct: 408 GKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCP 451
>NU4M_CARAU (O78687) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 460 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +1 Query: 88 VLPAINLQPTLWHFNTH-KHSTTTLHELLFVTIITKKTMPEWVRHTGYNKSGT 243 ++P I L PT+W + +TTT H LL +I +W TG+ S T Sbjct: 5 LIPTIMLFPTIWLTSPKWLWTTTTAHSLLIASI--SLMWFKWTSETGWTSSNT 55
>VHR1_COWPX (P12932) Host range protein 1| Length = 669 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 16/73 (21%) Frame = +3 Query: 288 WAIVCTDHG-NVLHF----PQLQ-----------TWESL*LVPNAWCANSQLLRNPDSVT 419 ++++ TDHG ++H P+L+ TW+ + L PNA ++++ +N +SV Sbjct: 590 FSLIFTDHGAKIIHRYANNPELRAYYESKQNKIYTWKYMILFPNAIVKHNKIHKNIESVD 649 Query: 420 DLSTIGTMSWIIR 458 D + I + + I+ Sbjct: 650 DNTYISNLPYTIK 662
>NU4M_BRARE (Q9MIY1) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 460 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +1 Query: 88 VLPAINLQPTLWHFNTHKHSTTTLHELLFVTIITKKTMPEWVRHTGYNKSGT 243 ++P I L PT+W ++ TTT + I+ T +W TG+N S + Sbjct: 5 LIPTIMLFPTIWLSSSKWLWTTTTMNSFLIAFIS-LTWLKWTSDTGWNASNS 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,971,107 Number of Sequences: 219361 Number of extensions: 1813797 Number of successful extensions: 4521 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4327 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4521 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
