Clone Name | rbah63b07 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... | 127 | 1e-29 | 2 | DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... | 84 | 1e-16 | 3 | DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... | 79 | 5e-15 | 4 | SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog | 29 | 6.0 |
---|
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 127 bits (320), Expect = 1e-29 Identities = 65/73 (89%), Positives = 68/73 (93%), Gaps = 2/73 (2%) Frame = -1 Query: 448 ELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEE 269 ELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF ENVESGHPLVKEGKLANLLAWRAEE Sbjct: 323 ELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHPLVKEGKLANLLAWRAEE 380 Query: 268 DSLEE--GAVLCE 236 +SLEE GA+LCE Sbjct: 381 ESLEEGTGALLCE 393
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 84.3 bits (207), Expect = 1e-16 Identities = 43/65 (66%), Positives = 50/65 (76%) Frame = -1 Query: 448 ELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEE 269 ELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ + P VKEGKL NLL W E Sbjct: 330 ELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGKLGNLLPW--GE 386 Query: 268 DSLEE 254 D+LEE Sbjct: 387 DALEE 391
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 79.0 bits (193), Expect = 5e-15 Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 1/68 (1%) Frame = -1 Query: 448 ELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-HPLVKEGKLANLLAWRAE 272 ELP GG+L+YQSF A E+ A SP+SVFHCF+GENVES P+ K+ KLANLL W E Sbjct: 330 ELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPPPMKKDYKLANLLCWEEE 387 Query: 271 EDSLEEGA 248 D++EE A Sbjct: 388 ADAMEEKA 395
>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog| Length = 713 Score = 28.9 bits (63), Expect = 6.0 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -1 Query: 385 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 245 +AGSP S G P+ + N+ +W A +DS+ EGAV Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,308,856 Number of Sequences: 219361 Number of extensions: 909841 Number of successful extensions: 2691 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2687 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)