ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 127 1e-29
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 84 1e-16
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 79 5e-15
4SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 29 6.0

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  127 bits (320), Expect = 1e-29
 Identities = 65/73 (89%), Positives = 68/73 (93%), Gaps = 2/73 (2%)
 Frame = -1

Query: 448 ELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEE 269
           ELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF  ENVESGHPLVKEGKLANLLAWRAEE
Sbjct: 323 ELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHPLVKEGKLANLLAWRAEE 380

Query: 268 DSLEE--GAVLCE 236
           +SLEE  GA+LCE
Sbjct: 381 ESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 43/65 (66%), Positives = 50/65 (76%)
 Frame = -1

Query: 448 ELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEE 269
           ELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ +  P VKEGKL NLL W   E
Sbjct: 330 ELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGKLGNLLPW--GE 386

Query: 268 DSLEE 254
           D+LEE
Sbjct: 387 DALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
 Frame = -1

Query: 448 ELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-HPLVKEGKLANLLAWRAE 272
           ELP GG+L+YQSF A E+    A SP+SVFHCF+GENVES   P+ K+ KLANLL W  E
Sbjct: 330 ELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPPPMKKDYKLANLLCWEEE 387

Query: 271 EDSLEEGA 248
            D++EE A
Sbjct: 388 ADAMEEKA 395



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 385 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 245
           +AGSP S            G P+    +  N+ +W A +DS+ EGAV
Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,308,856
Number of Sequences: 219361
Number of extensions: 909841
Number of successful extensions: 2691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2687
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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