ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099191.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 6e-41
2dbj|AK119236.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
3dbj|AK067438.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
4ref|NM_185227.2| Oryza sativa (japonica cultivar-group), predic... 165 2e-37
5emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 92 3e-15
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
7gb|AY106349.1| Zea mays PCO103153 mRNA sequence 68 4e-08
8gb|AY214336.1| Medicago truncatula nicotinate phosphoribosyltran... 56 1e-04
9gb|AE000661.1|HUAE000661 Homo sapiens T-cell receptor alpha delt... 50 0.009
10ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 50 0.009
11emb|AL031943.11|HS223B1 Human DNA sequence from clone RP1-223B1 ... 44 0.56
12gb|AC108169.5| Homo sapiens BAC clone RP11-1236J3 from 4, comple... 44 0.56
13gb|AC016143.34| Homo sapiens 12 BAC RP11-350F4 (Roswell Park Can... 42 2.2
14gb|AF214671.8| Homo sapiens chromosome 8 clone GS1-42F21 map 8qt... 42 2.2
15gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 42 2.2
16dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 42 2.2
17ref|NM_127906.3| Arabidopsis thaliana nicotinate phosphoribosylt... 40 8.7
18gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete s... 40 8.7
19gb|AC149428.1| Populus trichocarpa clone Pop1-080J15, complete s... 40 8.7
20gb|AC149427.1| Populus trichocarpa clone Pop1-065A01, complete s... 40 8.7
21gb|AC140841.2| Mus musculus BAC clone RP24-470M20 from chromosom... 40 8.7
22gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosom... 40 8.7
23gb|AC009070.12| Homo sapiens chromosome 16 clone RP11-314O13, co... 40 8.7
24gb|AC122020.3| Mus musculus BAC clone RP24-365G17 from chromosom... 40 8.7
25gb|AC127301.3| Mus musculus BAC clone RP23-269N6 from 18, comple... 40 8.7
26emb|AL354992.7| Human DNA sequence from clone RP11-293A1 on chro... 40 8.7
27gb|AY050994.1| Arabidopsis thaliana At2g23420 mRNA sequence 40 8.7
28ref|NM_001030693.1| Gallus gallus toll-like receptor 4 (TLR4), mRNA 40 8.7
29emb|AJ543651.1|SYN543651 Synechococcus sp. PCC 7002 smc gene 40 8.7
30gb|AC119409.25| Medicago truncatula clone mth2-10i9, complete se... 40 8.7
31gb|AC097066.2| Homo sapiens chromosome 1 clone RP11-575B7, compl... 40 8.7
32gb|AY064697.1| Gallus gallus toll-like receptor 4 (TLR4) gene, c... 40 8.7
33dbj|AB013393.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.7
34gb|AC102250.10| Mus musculus chromosome 18, clone RP24-162I6, co... 40 8.7
35dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.7
36gb|BT001932.1| Arabidopsis thaliana clone C105382 unknown protei... 40 8.7
37gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complet... 40 8.7
38gb|AC132363.3| Mus musculus BAC clone RP23-455N1 from 1, complet... 40 8.7
39emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chro... 40 8.7 
>dbj|AK099191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110O20, full
            insert sequence
          Length = 2128

 Score =  176 bits (89), Expect = 6e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                        
Query: 489  atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 548
            ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 1870 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 1811

                                                                        
Query: 549  agctttgcactcacactcaccttgtaaggtgtcggatttagccgcctgatgtgatccggc 608
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || 
Sbjct: 1810 agctttgcactcacactcaccttgtaaggtgtcggatttaaccgcctgatgtgatctggt 1751

                                         
Query: 609  cgcagtttttcgagctgttgcatacagcg 637
            || |||||||| ||||||||||| |||||
Sbjct: 1750 cgaagtttttcaagctgttgcatgcagcg 1722
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>dbj|AK119236.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D09, full
            insert sequence
          Length = 1972

 Score =  168 bits (85), Expect = 1e-38
 Identities = 133/149 (89%)
 Strand = Plus / Minus

                                                                        
Query: 489  atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 548
            ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 1884 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 1825

                                                                        
Query: 549  agctttgcactcacactcaccttgtaaggtgtcggatttagccgcctgatgtgatccggc 608
            |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || 
Sbjct: 1824 agctttgcactcacactcaccttgtaaggtgttggatttaaccgcctgatgtgatctggt 1765

                                         
Query: 609  cgcagtttttcgagctgttgcatacagcg 637
            || |||||||| ||||||||||| |||||
Sbjct: 1764 cgaagtttttcaagctgttgcatgcagcg 1736
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>dbj|AK067438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013103F09, full
            insert sequence
          Length = 2216

 Score =  168 bits (85), Expect = 1e-38
 Identities = 133/149 (89%)
 Strand = Plus / Minus

                                                                        
Query: 489  atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 548
            ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 1883 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 1824

                                                                        
Query: 549  agctttgcactcacactcaccttgtaaggtgtcggatttagccgcctgatgtgatccggc 608
            |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || 
Sbjct: 1823 agctttgcactcacactcaccttgtaaggtgttggatttaaccgcctgatgtgatctggt 1764

                                         
Query: 609  cgcagtttttcgagctgttgcatacagcg 637
            || |||||||| ||||||||||| |||||
Sbjct: 1763 cgaagtttttcaagctgttgcatgcagcg 1735
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>ref|NM_185227.2| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1608

 Score =  165 bits (83), Expect = 2e-37
 Identities = 128/143 (89%)
 Strand = Plus / Minus

                                                                        
Query: 495  tgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatacagcttt 554
            ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||||||||
Sbjct: 1604 tgtaactctcctactggggcctcattcaaccatagggaatggataaactcatacagcttt 1545

                                                                        
Query: 555  gcactcacactcaccttgtaaggtgtcggatttagccgcctgatgtgatccggccgcagt 614
            |||||||||||||||||||||||||| ||||||| ||||||||||||||| || || |||
Sbjct: 1544 gcactcacactcaccttgtaaggtgttggatttaaccgcctgatgtgatctggtcgaagt 1485

                                   
Query: 615  ttttcgagctgttgcatacagcg 637
            ||||| ||||||||||| |||||
Sbjct: 1484 ttttcaagctgttgcatgcagcg 1462
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>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
              complete sequence
          Length = 163738

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                          
Query: 489    atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 548
              ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 139687 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 139628

                                    
Query: 549    agctttgcactcacactcacct 570
              ||||||||||||||||||||||
Sbjct: 139627 agctttgcactcacactcacct 139606



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                          
Query: 567    accttgtaaggtgtcggatttagccgcctgatgtgatccggccgcagtttttcgagctgt 626
              |||||||||||||| ||||||| ||||||||||||||| || || |||||||| ||||||
Sbjct: 139527 accttgtaaggtgttggatttaaccgcctgatgtgatctggtcgaagtttttcaagctgt 139468

                         
Query: 627    tgcatacagcg 637
              ||||| |||||
Sbjct: 139467 tgcatgcagcg 139457
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                            
Query: 489      atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 548
                ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 21326213 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 21326154

                                      
Query: 549      agctttgcactcacactcacct 570
                ||||||||||||||||||||||
Sbjct: 21326153 agctttgcactcacactcacct 21326132



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 567      accttgtaaggtgtcggatttagccgcctgatgtgatccggccgcagtttttcgagctgt 626
                |||||||||||||| ||||||| ||||||||||||||| || || |||||||| ||||||
Sbjct: 21326053 accttgtaaggtgttggatttaaccgcctgatgtgatctggtcgaagtttttcaagctgt 21325994

                           
Query: 627      tgcatacagcg 637
                ||||| |||||
Sbjct: 21325993 tgcatgcagcg 21325983
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>gb|AY106349.1| Zea mays PCO103153 mRNA sequence
          Length = 511

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                       
Query: 510 ggcgcctcgttcagccataggtaatgaatgaactcatacagctttgcactcacactcacc 569
           ||||| ||||| ||||| | | |||| ||||| ||||||||||| |||||||| || |||
Sbjct: 184 ggcgcttcgttgagccacaagaaatggatgaagtcatacagcttagcactcacgcttacc 125

                                     
Query: 570 ttgtaaggtgtcggatttagccgcct 595
           |||||||| ||||| || ||||||||
Sbjct: 124 ttgtaaggcgtcgggttcagccgcct 99
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>gb|AY214336.1| Medicago truncatula nicotinate phosphoribosyltransferase-like protein
            mRNA, complete cds
          Length = 2018

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 507  actggcgcctcgttcagccataggtaatgaatgaactcatacagctttgcactcacactc 566
            ||||| ||||| || ||||| | | |||||||||||||||| |  |||||||||||||| 
Sbjct: 1687 actggtgcctcattgagccacaagaaatgaatgaactcatataattttgcactcacacta 1628

                    
Query: 567  accttgta 574
            ||||||||
Sbjct: 1627 accttgta 1620
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>gb|AE000661.1|HUAE000661 Homo sapiens T-cell receptor alpha delta locus from bases 752679 to
             1000555 (section 4 of 5) of the Complete Nucleotide
             Sequence
          Length = 247877

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 336   ggaaactggagatcaaaaataaaattcta 364
             |||||||| ||||||||||||||||||||
Sbjct: 23311 ggaaactgtagatcaaaaataaaattcta 23283
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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 336    ggaaactggagatcaaaaataaaattcta 364
              |||||||| ||||||||||||||||||||
Sbjct: 775989 ggaaactgtagatcaaaaataaaattcta 775961
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>emb|AL031943.11|HS223B1 Human DNA sequence from clone RP1-223B1 on chromosome 6p24.1-25.3
             Contains the 3' end of a putative novel gene, complete
             sequence
          Length = 126281

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 272   taattccataacacttcatata 293
             ||||||||||||||||||||||
Sbjct: 20411 taattccataacacttcatata 20432
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>gb|AC108169.5| Homo sapiens BAC clone RP11-1236J3 from 4, complete sequence
          Length = 111806

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 330    acatatggaaactggagatcaaaaataaaa 359
              |||||||||||||| || ||||||||||||
Sbjct: 107430 acatatggaaactgaagctcaaaaataaaa 107401
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>gb|AC016143.34| Homo sapiens 12 BAC RP11-350F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 54686

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 307   ctttatactggcaatgaattt 327
             |||||||||||||||||||||
Sbjct: 51215 ctttatactggcaatgaattt 51195
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>gb|AF214671.8| Homo sapiens chromosome 8 clone GS1-42F21 map 8qtel, complete sequence
          Length = 78545

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 340   actggagatcaaaaataaaattcta 364
             |||| ||||||||||||||||||||
Sbjct: 13822 actgtagatcaaaaataaaattcta 13798
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>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 340   actggagatcaaaaataaaattcta 364
             |||| ||||||||||||||||||||
Sbjct: 99029 actgtagatcaaaaataaaattcta 99053
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>dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB262G12, complete
              sequence
          Length = 126698

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 340    actggagatcaaaaataaaattcta 364
              |||| ||||||||||||||||||||
Sbjct: 119303 actgtagatcaaaaataaaattcta 119327
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>ref|NM_127906.3| Arabidopsis thaliana nicotinate phosphoribosyltransferase AT2G23420
            mRNA, complete cds
          Length = 2011

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 89/112 (79%)
 Strand = Plus / Minus

                                                                        
Query: 516  tcgttcagccataggtaatgaatgaactcatacagctttgcactcacactcaccttgtaa 575
            ||||| ||||||| | | || ||||| || ||||||||||| || ||||| ||||| |||
Sbjct: 1703 tcgtttagccataagaagtggatgaaatcgtacagctttgcgcttacactaaccttataa 1644

                                                                
Query: 576  ggtgtcggatttagccgcctgatgtgatccggccgcagtttttcgagctgtt 627
            || || || ||||  | ||| || ||||| || ||||  |||||||||||||
Sbjct: 1643 ggagttgggtttaatctcctcatatgatcaggtcgcatgttttcgagctgtt 1592
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>gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete sequence
          Length = 129742

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   cttattctttaataattcca 279
             ||||||||||||||||||||
Sbjct: 34288 cttattctttaataattcca 34269
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>gb|AC149428.1| Populus trichocarpa clone Pop1-080J15, complete sequence
          Length = 98246

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 260  cttattctttaataattcca 279
            ||||||||||||||||||||
Sbjct: 9662 cttattctttaataattcca 9643
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>gb|AC149427.1| Populus trichocarpa clone Pop1-065A01, complete sequence
          Length = 84222

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   cttattctttaataattcca 279
             ||||||||||||||||||||
Sbjct: 80629 cttattctttaataattcca 80610
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>gb|AC140841.2| Mus musculus BAC clone RP24-470M20 from chromosome 9, complete sequence
          Length = 163348

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    tttgtattcatctccaggtagcct 139
              ||||| ||||||||||||||||||
Sbjct: 144176 tttgtcttcatctccaggtagcct 144153
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>gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosome 9, complete sequence
          Length = 217511

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 116   tttgtattcatctccaggtagcct 139
             ||||| ||||||||||||||||||
Sbjct: 25176 tttgtcttcatctccaggtagcct 25153
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>gb|AC009070.12| Homo sapiens chromosome 16 clone RP11-314O13, complete sequence
          Length = 203131

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 143    ataaataagccaagcaagatcaaa 166
              ||||||||| ||||||||||||||
Sbjct: 108970 ataaataagacaagcaagatcaaa 108947
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>gb|AC122020.3| Mus musculus BAC clone RP24-365G17 from chromosome 1, complete sequence
          Length = 165592

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    aactggagatcaaaaataaa 358
              ||||||||||||||||||||
Sbjct: 126673 aactggagatcaaaaataaa 126692
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>gb|AC127301.3| Mus musculus BAC clone RP23-269N6 from 18, complete sequence
          Length = 166565

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   catataggattccaccagcc 307
             ||||||||||||||||||||
Sbjct: 33046 catataggattccaccagcc 33065
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>emb|AL354992.7| Human DNA sequence from clone RP11-293A1 on chromosome 9, complete
             sequence
          Length = 173911

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   aaagcaacaaccatgctcct 248
             ||||||||||||||||||||
Sbjct: 44458 aaagcaacaaccatgctcct 44477
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>gb|AY050994.1| Arabidopsis thaliana At2g23420 mRNA sequence
          Length = 1967

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 89/112 (79%)
 Strand = Plus / Minus

                                                                        
Query: 516  tcgttcagccataggtaatgaatgaactcatacagctttgcactcacactcaccttgtaa 575
            ||||| ||||||| | | || ||||| || ||||||||||| || ||||| ||||| |||
Sbjct: 1643 tcgtttagccataagaagtggatgaaatcgtacagctttgcgcttacactaaccttataa 1584

                                                                
Query: 576  ggtgtcggatttagccgcctgatgtgatccggccgcagtttttcgagctgtt 627
            || || || ||||  | ||| || ||||| || ||||  |||||||||||||
Sbjct: 1583 ggagttgggtttaatctcctcatatgatcaggtcgcatgttttcgagctgtt 1532
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>ref|NM_001030693.1| Gallus gallus toll-like receptor 4 (TLR4), mRNA
          Length = 3532

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 610  gcagtttttcgagctgttgc 629
            ||||||||||||||||||||
Sbjct: 2736 gcagtttttcgagctgttgc 2717
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>emb|AJ543651.1|SYN543651 Synechococcus sp. PCC 7002 smc gene
          Length = 3630

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 610  gcagtttttcgagctgttgc 629
            ||||||||||||||||||||
Sbjct: 2875 gcagtttttcgagctgttgc 2856
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>gb|AC119409.25| Medicago truncatula clone mth2-10i9, complete sequence
          Length = 127954

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    aaaaataaaattctacgaga 369
              ||||||||||||||||||||
Sbjct: 112169 aaaaataaaattctacgaga 112188
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>gb|AC097066.2| Homo sapiens chromosome 1 clone RP11-575B7, complete sequence
          Length = 168686

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    tttatactggcaatgaattt 327
              ||||||||||||||||||||
Sbjct: 158649 tttatactggcaatgaattt 158668
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>gb|AY064697.1| Gallus gallus toll-like receptor 4 (TLR4) gene, complete cds
          Length = 11698

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 610  gcagtttttcgagctgttgc 629
            ||||||||||||||||||||
Sbjct: 7397 gcagtttttcgagctgttgc 7378
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>dbj|AB013393.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJE4
          Length = 63989

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 251   caactgatgcttattctttaataa 274
             ||||||||||||| ||||||||||
Sbjct: 16463 caactgatgcttaatctttaataa 16486
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>gb|AC102250.10| Mus musculus chromosome 18, clone RP24-162I6, complete sequence
          Length = 185297

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    catataggattccaccagcc 307
              ||||||||||||||||||||
Sbjct: 100024 catataggattccaccagcc 100043
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>dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-168H23, complete
             sequence
          Length = 181276

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   agatcaaaaataaaattcta 364
             ||||||||||||||||||||
Sbjct: 75286 agatcaaaaataaaattcta 75305
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>gb|BT001932.1| Arabidopsis thaliana clone C105382 unknown protein (At2g23420) mRNA,
            complete cds
          Length = 1705

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 89/112 (79%)
 Strand = Plus / Minus

                                                                        
Query: 516  tcgttcagccataggtaatgaatgaactcatacagctttgcactcacactcaccttgtaa 575
            ||||| ||||||| | | || ||||| || ||||||||||| || ||||| ||||| |||
Sbjct: 1649 tcgtttagccataagaagtggatgaaatcgtacagctttgcgcttacactaaccttataa 1590

                                                                
Query: 576  ggtgtcggatttagccgcctgatgtgatccggccgcagtttttcgagctgtt 627
            || || || ||||  | ||| || ||||| || ||||  |||||||||||||
Sbjct: 1589 ggagttgggtttaatctcctcatatgatcaggtcgcatgttttcgagctgtt 1538
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>gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complete sequence
          Length = 171720

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 545   atacagctttgcactcacactcaccttg 572
             ||||||||||| ||||||| ||||||||
Sbjct: 72358 atacagctttgtactcacagtcaccttg 72385
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>gb|AC132363.3| Mus musculus BAC clone RP23-455N1 from 1, complete sequence
          Length = 180858

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    aactggagatcaaaaataaa 358
              ||||||||||||||||||||
Sbjct: 165074 aactggagatcaaaaataaa 165055
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>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete
             sequence
          Length = 165092

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 518   gttcagccataggtaatgaa 537
             ||||||||||||||||||||
Sbjct: 66739 gttcagccataggtaatgaa 66720


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,767,765
Number of Sequences: 3902068
Number of extensions: 5767765
Number of successful extensions: 100762
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100672
Number of HSP's gapped (non-prelim): 90
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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