ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62m06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 787 bits (397), Expect = 0.0 Identities = 435/441 (98%), Gaps = 5/441 (1%) Strand = Plus / Minus Query: 14 aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 72 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643 Query: 73 gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 131 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583 Query: 132 gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 190 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523 Query: 191 gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctccta 249 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463 Query: 250 tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 308 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403 Query: 309 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1402 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 1343 Query: 369 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1342 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 1283 Query: 429 cgactgtcatctttggctgct 449 ||||||||||||||||||||| Sbjct: 1282 cgactgtcatctttggctgct 1262
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 636 bits (321), Expect = e-179 Identities = 411/438 (93%), Gaps = 11/438 (2%) Strand = Plus / Minus Query: 18 ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 77 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709 Query: 78 gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatgcttaaaag 131 ||||||| ||||||||| | ||||||||||||||||||| ||||||||||||||| Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650 Query: 132 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 191 ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | ||| Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttggcagtctgg 590 Query: 192 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctcctcctatg 251 |||||||| ||| |||| || |||||||||||||||||||| |||||||||||||||||| Sbjct: 589 tcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctttacctcctcctatg 530 Query: 252 cagcaagagatggtgggtgtgtatggagaattttctaaccgtagaaggaaccagtcttca 311 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 529 cagcaagagatggtgggtgtgtatggagaatgttctaaccgtagaaggtaccagtcttca 470 Query: 312 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 410 Query: 372 cacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcga 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 409 cacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcca 350 Query: 432 ctgtcatctttggctgct 449 |||||||||||||||||| Sbjct: 349 ctgtcatctttggctgct 332
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 634 bits (320), Expect = e-179 Identities = 394/416 (94%), Gaps = 7/416 (1%) Strand = Plus / Minus Query: 40 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 93 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 94 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 153 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 154 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 213 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 214 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 273 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 274 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 333 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 334 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 394 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgct 1182
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 460 bits (232), Expect = e-126 Identities = 242/244 (99%), Gaps = 1/244 (0%) Strand = Plus / Minus Query: 1 attggtctttgccaa-tgggtatactcaatatatttagagatatattaacaaaacatgcc 59 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 7766 attggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgcc 7707 Query: 60 cagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtgg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7706 cagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtgg 7647 Query: 120 catgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7646 catgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttc 7587 Query: 180 ttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctccttta 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7586 ttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctccttta 7527 Query: 240 cctc 243 |||| Sbjct: 7526 cctc 7523 Score = 418 bits (211), Expect = e-114 Identities = 211/211 (100%) Strand = Plus / Minus Query: 239 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 299 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 359 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 419 agcagcttctcgactgtcatctttggctgct 449 ||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgct 7145 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 365 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 424 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 425 ttctcgactgtcatctttggctg 447 ||||| | |||||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctg 3879
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 452 bits (228), Expect = e-124 Identities = 362/403 (89%), Gaps = 9/403 (2%) Strand = Plus / Minus Query: 54 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 107 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 108 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 166 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 167 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 226 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 227 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 286 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 287 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 346 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 347 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 406 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 407 tgcccgtactctagcagcttctcgactgtcatctttggctgct 449 || |||||||| |||| |||||| || |||||||| ||||||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgct 1193
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 444 bits (224), Expect = e-121 Identities = 227/228 (99%) Strand = Plus / Minus Query: 14 aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 73 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333 Query: 74 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273 Query: 134 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213 Query: 194 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 241 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165 Score = 319 bits (161), Expect = 4e-84 Identities = 161/161 (100%) Strand = Plus / Minus Query: 289 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 349 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 409 cccgtactctagcagcttctcgactgtcatctttggctgct 449 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgct 1007
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 355 bits (179), Expect = 8e-95 Identities = 182/183 (99%) Strand = Plus / Minus Query: 267 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 326 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 327 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 387 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 447 gct 449 ||| Sbjct: 128 gct 126
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 224 bits (113), Expect = 2e-55 Identities = 149/161 (92%) Strand = Plus / Minus Query: 289 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 348 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 349 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 408 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 409 cccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| |||| |||||| || |||||||| ||||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgct 1203 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 113 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 172 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 173 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 232 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 233 tcctttacc 241 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 182 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 238 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 239 acctcctcct 248 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 288 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 347 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 348 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 407 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 408 gcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1149
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 182 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 238 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 239 acctcctcct 248 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 288 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 347 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 348 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 407 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 408 gcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1187
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 182 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 238 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 239 acctcctcct 248 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 288 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 347 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 348 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 407 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 408 gcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1186
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 182 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 238 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 239 acctcctcct 248 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 288 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 347 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 348 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 407 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 408 gcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgct 970
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 182 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 238 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 239 acctcctcct 248 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 288 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 347 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 348 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 407 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 408 gcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1191
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 97.6 bits (49), Expect = 3e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 285 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 344 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 345 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 404 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 405 tgtgcccgtactctagcagcttctcgactgtcatctttggctgct 449 ||| |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgct 108470 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 140 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 199 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 200 accttccggcacggg 214 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 97.6 bits (49), Expect = 3e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 285 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 344 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 345 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 404 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 405 tgtgcccgtactctagcagcttctcgactgtcatctttggctgct 449 ||| |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgct 30347 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 140 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 199 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 200 accttccggcacggg 214 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 288 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 347 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 348 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 407 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 408 gcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgct 1155
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 87.7 bits (44), Expect = 3e-14 Identities = 131/160 (81%) Strand = Plus / Minus Query: 290 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 349 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 350 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 409 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 410 ccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgct 1150
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 97.6 bits (49), Expect = 3e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 285 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 344 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 345 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 404 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 405 tgtgcccgtactctagcagcttctcgactgtcatctttggctgct 449 ||| |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgct 28303609 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 140 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 199 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 200 accttccggcacggg 214 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 97.6 bits (49), Expect = 3e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 285 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 344 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 345 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 404 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 405 tgtgcccgtactctagcagcttctcgactgtcatctttggctgct 449 ||| |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgct 28286058 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 140 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 199 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 200 accttccggcacggg 214 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 87.7 bits (44), Expect = 3e-14 Identities = 131/160 (81%) Strand = Plus / Minus Query: 290 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 349 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 350 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 409 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 410 ccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgct 1185
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 128 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 187 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 188 ttggtcggtgcaaccttccggcacgggca 216 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 119 bits (60), Expect = 8e-24 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 182 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 238 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 239 acctcctcct 248 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 288 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 347 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 348 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 407 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 408 gcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1198
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 286 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 345 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 346 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 405 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 406 gtgcccgtactctagcagcttctcgactgtcatctttggctgc 448 || |||||||| |||||||| || | |||||||| |||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgc 845 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 132 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 191 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 192 tcggtgcaaccttc 205 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 288 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 347 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 348 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 407 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 408 gcccgtactctagcagcttctcgactgtcatctttggctgct 449 |||||||| | ||||| |||| |||||||| ||||||| Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgct 404
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 87.7 bits (44), Expect = 3e-14 Identities = 128/156 (82%) Strand = Plus / Minus Query: 294 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 353 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 354 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 413 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 414 actctagcagcttctcgactgtcatctttggctgct 449 |||| | |||||||||| || ||||| ||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgct 764
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 87.7 bits (44), Expect = 3e-14 Identities = 128/156 (82%) Strand = Plus / Minus Query: 294 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 353 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 354 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 413 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 414 actctagcagcttctcgactgtcatctttggctgct 449 |||| | |||||||||| || ||||| ||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgct 1159
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 87.7 bits (44), Expect = 3e-14 Identities = 128/156 (82%) Strand = Plus / Minus Query: 293 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 352 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 353 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 412 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 413 tactctagcagcttctcgactgtcatctttggctgc 448 ||||| |||||||| || | |||||||| |||||| Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgc 1039 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 132 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 191 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 192 tcggtgcaaccttc 205 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 87.7 bits (44), Expect = 3e-14 Identities = 128/156 (82%) Strand = Plus / Minus Query: 294 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 353 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 354 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 413 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 414 actctagcagcttctcgactgtcatctttggctgct 449 |||| | |||||||||| || ||||| ||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgct 1159
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 7e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 311 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 370 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 371 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 426 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 122 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 181 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 182 ggcattttggtcggtgcaaccttccggcacgggca 216 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 365 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 424 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 425 ttctcgactgtcatctttggctg 447 ||||| | |||||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctg 1310
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 365 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 424 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 425 ttctcgactgtcatctttggctg 447 ||||||| |||||||| ||||| Sbjct: 1182 ttctcgatggtcatcttgggctg 1160
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 132 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 191 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 192 tcggtgcaaccttc 205 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 132 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 191 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 192 tcggtgcaaccttc 205 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 48.1 bits (24), Expect = 0.025 Identities = 102/128 (79%) Strand = Plus / Minus Query: 322 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 381 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 382 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 441 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 442 tggctgct 449 ||||||| Sbjct: 1243 cggctgct 1236
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Minus Query: 314 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 363 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 catcacccagagctgcctggct 348 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 aatatatttagagatatattaa 48 |||||||||||||||||||||| Sbjct: 67942 aatatatttagagatatattaa 67963
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 tatatttagagatatattaac 49 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 tatatttagagatatattaac 49 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 aaacatcagatattaaaagtg 118 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 atgcagcaagagatggtgggt 269 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 365 agctgcacacgcttgacattgtcctgctc 393 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 aaacatcagatattaaaagtg 118 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 aaacatcagatattaaaagtg 118 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 tatatttagagatatattaac 49 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cctttacctcctcctatgca 253 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 catcacccagagctgcctggctca 350 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cctttacctcctcctatgca 253 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 6.0 Identities = 68/84 (80%) Strand = Plus / Minus Query: 323 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 382 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 383 ttgtcctgctcctggacgagcatg 406 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cctttacctcctcctatgca 253 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA Length = 3732 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ggtctttgccaatgggtata 23 |||||||||||||||||||| Sbjct: 2247 ggtctttgccaatgggtata 2266
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gtcagcaagctgcacacgct 377 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tcagatattaaaagtggcat 122 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tcagatattaaaagtggcat 122 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tcagatattaaaagtggcat 122 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 catcacccagagctgcctggctca 350 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 aatatatttagagatatatt 46 |||||||||||||||||||| Sbjct: 30454 aatatatttagagatatatt 30473
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ttgacattgtcctgctcctg 396 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 catcacccagagctgcctggctca 350 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 131 ggtgtaaaggcagctgccgtcgtcgctc 158 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 aaacatgcccagcaatcgcttgga 74 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cctttacctcctcctatgca 253 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 catcacccagagctgcctggctca 350 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 catcacccagagctgcctggctca 350 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 catcacccagagctgcctggctca 350 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tggcatgcttaaaaggtgta 136 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ttgacattgtcctgctcctg 396 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 catcacccagagctgcctggctca 350 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cttgctgtgctcctttacctcctc 246 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cctttacctcctcctatgca 253 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aatatatttagagatatatt 46 |||||||||||||||||||| Sbjct: 62504 aatatatttagagatatatt 62485
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 atcagatattaaaagtggcatgct 125 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,668,699 Number of Sequences: 3902068 Number of extensions: 3668699 Number of successful extensions: 72309 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 72027 Number of HSP's gapped (non-prelim): 233 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
