>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 86.3 bits (212), Expect(2) = 1e-34
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -2

Query: 255 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 142
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



 Score = 78.6 bits (192), Expect(2) = 1e-34
 Identities = 38/40 (95%), Positives = 38/40 (95%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFYG 303
           HMLVQEQDNVK VQLADTYMSQAA GDANQDAMKTGSFYG
Sbjct: 388 HMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 66.6 bits (161), Expect(2) = 3e-24
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -2

Query: 258 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 142
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



 Score = 63.5 bits (153), Expect(2) = 3e-24
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = -3

Query: 419 MLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFYG 303
           MLVQEQ+NVK VQLAD YMS+AA GDAN DA+K G+FYG
Sbjct: 399 MLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 67.8 bits (164), Expect(2) = 2e-23
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -2

Query: 255 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 142
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



 Score = 59.7 bits (143), Expect(2) = 2e-23
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFYG 303
           +MLV EQ+NVK VQLA+TY+SQAA GDAN DA+  G+FYG
Sbjct: 398 NMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 63.9 bits (154), Expect(2) = 3e-22
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -2

Query: 255 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 148
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



 Score = 59.7 bits (143), Expect(2) = 3e-22
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFYG 303
           +MLVQEQ+NVK VQLAD YMS AA GDAN+DA+  G+F+G
Sbjct: 396 NMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 31/40 (77%), Positives = 35/40 (87%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFYG 303
           HMLVQEQ+NVK VQLAD Y+S+AA G AN DAMKTG+FYG
Sbjct: 385 HMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFYG 303
           +MLV+EQ+NVK VQLA+ Y+S+AA GDAN DAMKTGSFYG
Sbjct: 388 YMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 64.7 bits (156), Expect = 8e-11
 Identities = 30/40 (75%), Positives = 35/40 (87%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFYG 303
           +MLVQEQ+NVK VQLAD Y+S+AA GDAN DAM TG+FYG
Sbjct: 398 NMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 28/39 (71%), Positives = 35/39 (89%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFY 306
           HMLV EQ+NVK VQLAD Y+++AA G+AN+DAMKTGSF+
Sbjct: 394 HMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 28/38 (73%), Positives = 34/38 (89%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSF 309
           +MLV+EQ+NVK VQLAD YMS+AA GDANQDA+K G+F
Sbjct: 398 NMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 26/39 (66%), Positives = 36/39 (92%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFY 306
           +MLVQEQ+NVK VQLAD Y+++AA G+AN+DA+K+GSF+
Sbjct: 400 NMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 26/38 (68%), Positives = 35/38 (92%)
 Frame = -3

Query: 419 MLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFY 306
           MLVQEQ+NVK VQLAD Y+++AA G+AN+DA+K+GSF+
Sbjct: 403 MLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSF 309
           +MLVQEQ+NVK VQLA+TY+ +AA GDAN DA+ TG+F
Sbjct: 402 NMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTGSFY 306
           +MLVQEQ+NVK VQLAD Y+ +AA GDAN DA+  GSF+
Sbjct: 402 NMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 25/36 (69%), Positives = 31/36 (86%)
 Frame = -3

Query: 422 HMLVQEQDNVKGVQLADTYMSQAAXGDANQDAMKTG 315
           +MLVQEQ+NVK VQLA+TY+ +AA GDAN DA+ TG
Sbjct: 397 NMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -3

Query: 416 LVQEQDNVKGVQLADTYMSQA 354
           LV EQ+NVK VQLAD Y+S A
Sbjct: 372 LVDEQENVKRVQLADAYLSGA 392

>AROC_RHOPA (Q6NAI4) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 362

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 395 VKGVQLADTYMSQAAXGDANQDAMKTGSFYG*KILHTH 282
           VKGV++ D + S    G+ N D M+TG+ +G   L  H
Sbjct: 245 VKGVEIGDGFASAELTGEQNADEMRTGN-HGPAFLSNH 281

>EF1A_TETPY (Q04634) Elongation factor 1-alpha (EF-1-alpha) (14-nm|
           filament-associated protein)
          Length = 435

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 398 NVKGVQLADTYMSQAAXGDANQDAMKTGSFYG*KILHTHPPSLAA 264
           N+KGV + D      A    N  A +  +FY   I+  HP  + A
Sbjct: 300 NIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQA 344

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 315 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 157
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -3

Query: 398 NVKGVQLADTYMSQAAXGDANQDAMKTGSFYG*KILHTHPPSLAA 264
           NVK V + D      A    N   M+ GSF    I+  HP  + A
Sbjct: 311 NVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGA 355

>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
           (EF-1AO1)
          Length = 461

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 398 NVKGVQLADTYMSQAAXGDANQDAMKTGSFYG*KILHTHPPSLAA 264
           NVK + + D      A    N   M+ GSF    I+  HP  ++A
Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 398 NVKGVQLADTYMSQAAXGDANQDAMKTGSFYG*KILHTHPPSLAA 264
           NVK + + D      A    N   M+ GSF    I+  HP  ++A
Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 159  CRRRSLPLGRSSWHFGRCNLP 221
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,446,475
Number of Sequences: 219361
Number of extensions: 1179765
Number of successful extensions: 2965
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2965
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)