Clone Name	rbah62m04
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1070	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	842	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	839	0.0
4	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	664	0.0
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	630	e-177
6	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	603	e-169
7	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	521	e-145
8	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	404	e-109
9	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
10	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
11	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
12	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
13	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	135	2e-28
14	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	7e-28
15	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	7e-28
16	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	7e-28
17	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	133	7e-28
18	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	7e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	7e-28
20	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	7e-28
21	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	125	2e-25
22	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	123	7e-25
23	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	123	7e-25
24	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	3e-24
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
26	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	119	1e-23
27	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	103	7e-19
28	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	3e-18
29	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	4e-17
30	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	2e-16
31	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	2e-16
32	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	2e-16
33	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	82	2e-12
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
37	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	58	4e-05
38	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	1e-04
39	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	50	0.009
40	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	50	0.009
41	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.53
42	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.53
43	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.53
44	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.1
45	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	42	2.1
46	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.1
47	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	42	2.1
48	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
49	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	2.1
50	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	2.1
51	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.1
52	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.1
53	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.1
54	gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co...	40	8.3
55	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	8.3
56	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	8.3
57	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	8.3
58	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	8.3
59	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	8.3
60	ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (...	40	8.3
61	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	8.3
62	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	8.3
63	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	8.3
64	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	8.3
65	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	8.3
66	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	8.3
67	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	8.3
68	gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c...	40	8.3
69	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	8.3
70	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	8.3
71	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	8.3
72	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	8.3
73	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	8.3
74	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	8.3
75	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	8.3
76	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	8.3
77	gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com...	40	8.3
78	dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK...	40	8.3
79	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	8.3
80	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	8.3
81	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	8.3
82	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	8.3
83	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	8.3
84	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	8.3
85	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	40	8.3

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1070 bits (540), Expect = 0.0
 Identities = 578/584 (98%), Gaps = 5/584 (0%)
 Strand = Plus / Minus

                                                                        
Query: 29   aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 87
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 88   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 146
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                        
Query: 147  gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 205
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523

                                                                        
Query: 206  gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctccta 264
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463

                                                                        
Query: 265  tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 323
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403

                                                                        
Query: 324  tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 1343

                                                                        
Query: 384  gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 1283

                                                                        
Query: 444  cgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagcctct 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 cgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagcctct 1223

                                                                        
Query: 504  tgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtacaccc 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 tgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtacaccc 1163

                                                        
Query: 564  gagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 607
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 gagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 1119

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  842 bits (425), Expect = 0.0
 Identities = 570/614 (92%), Gaps = 12/614 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgataagtaggtgtattggtctttgccaa-tgggtatactcaatatatttagagatata 59
           |||||||||||   |||| |||||| |||| | |||||||||||||| ||||    ||||
Sbjct: 797 atgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta----tata 742

                                                                       
Query: 60  ttaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----ggtaa 113
           |||||||||||||||||||||||||||||||||||||||| |||||||||     | |||
Sbjct: 741 ttaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataa 682

                                                                       
Query: 114 aacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctc 173
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 aacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactc 623

                                                                       
Query: 174 cttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaa 233
           || |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||||
Sbjct: 622 ctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaaa 563

                                                                       
Query: 234 gtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatgga 293
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtatgga 503

                                                                       
Query: 294 gaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagag 353
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagag 443

                                                                       
Query: 354 ctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgga 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgga 383

                                                                       
Query: 414 cgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtca 473
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 382 cgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaaggtca 323

                                                                       
Query: 474 cgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccga 533
           | || ||||||||||||||||||||| ||||||||||||||||||| |||||||||   |
Sbjct: 322 ctggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtca 263

                                                                       
Query: 534 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 593
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 262 cccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatgg 203

                         
Query: 594 attgtcctgggaag 607
           ||||||||||||||
Sbjct: 202 attgtcctgggaag 189

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  839 bits (423), Expect = 0.0
 Identities = 527/559 (94%), Gaps = 7/559 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 108
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 109  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 168
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 169  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 228
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 229  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 288
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 289  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 348
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 349  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                                                                        
Query: 409  ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 468
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178

                                                                        
Query: 469  ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 528
            |||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118

                                                                        
Query: 529  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 588
            |   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 1058

                               
Query: 589  aatggattgtcctgggaag 607
             ||||||||||||||||||
Sbjct: 1057 gatggattgtcctgggaag 1039

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus

                                                                        
Query: 254  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 314  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 374  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

                                                                        
Query: 434  agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116

                                                                        
Query: 494  accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056

                                               
Query: 554  tcgtacacccgagcacgcagagcaccgaaaaagtc 588
            |||||||||||||||||||||||||||||||||||
Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021



 Score =  490 bits (247), Expect = e-135
 Identities = 257/259 (99%), Gaps = 1/259 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgataagtaggtgtattggtctttgccaa-tgggtatactcaatatatttagagatata 59
            |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 7781 atgataagtaggtgtattggtctttgccaaatgggtatacacaatatatttagagatata 7722

                                                                        
Query: 60   ttaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatc 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7721 ttaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatc 7662

                                                                        
Query: 120  agatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgcc 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7661 agatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgcc 7602

                                                                        
Query: 180  gttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacct 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7601 gttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacct 7542

                               
Query: 240  tgctgtgctcctttacctc 258
            |||||||||||||||||||
Sbjct: 7541 tgctgtgctcctttacctc 7523



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 380  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 439
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 440  ttctcgactgtcatctttggctgctcgaa 468
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                        
Query: 529  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 588
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753

                               
Query: 589  aatggattgtcctgggaag 607
             ||||| || || ||||||
Sbjct: 3752 gatggactgccccgggaag 3734



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 588  caatggattgtcctgggaag 607
            ||||||||||||||||||||
Sbjct: 6880 caatggattgtcctgggaag 6861

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  630 bits (318), Expect = e-177
 Identities = 491/545 (90%), Gaps = 9/545 (1%)
 Strand = Plus / Minus

                                                                        
Query: 69   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 122
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 123  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 181
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 182  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 241
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 242  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 301
             ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356

                                                                        
Query: 302  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 361
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                                        
Query: 362  ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 421
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236

                                                                        
Query: 422  tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 481
            || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176

                                                                        
Query: 482  tcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttg 541
            |||||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||
Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttg 1116

                                                                        
Query: 542  cgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcct 601
            ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1115 cgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcct 1056

                 
Query: 602  gggaa 606
            |||||
Sbjct: 1055 gggaa 1051

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  603 bits (304), Expect = e-169
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                        
Query: 304  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 364  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                                                                        
Query: 424  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988

                                                                        
Query: 484  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928

                                                                        
Query: 544  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868

                
Query: 604  gaag 607
            ||||
Sbjct: 867  gaag 864



 Score =  444 bits (224), Expect = e-121
 Identities = 227/228 (99%)
 Strand = Plus / Minus

                                                                        
Query: 29   aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 88
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 89   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 149  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                            
Query: 209  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 256
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  521 bits (263), Expect = e-145
 Identities = 296/307 (96%)
 Strand = Plus / Minus

                                                                       
Query: 282 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 341
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 342 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                                                       
Query: 402 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129

                                                                       
Query: 462 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 521
           |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69

                                                                       
Query: 522 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 581
           ||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 68  cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9

                  
Query: 582 aaaagtc 588
           |||||||
Sbjct: 8   aaaagtc 2

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  404 bits (204), Expect = e-109
 Identities = 279/304 (91%)
 Strand = Plus / Minus

                                                                        
Query: 304  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 363
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 364  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 423
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                                                                        
Query: 424  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 483
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184

                                                                        
Query: 484  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 543
            |||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||||
Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124

                                                                        
Query: 544  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 603
            |||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064

                
Query: 604  gaag 607
            ||||
Sbjct: 1063 gaag 1060



 Score =  176 bits (89), Expect = 6e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 128  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 187
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 188  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 247
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 248  tcctttacc 256
            |||||||||
Sbjct: 1369 tcctttacc 1361

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 197  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 253
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 254  acctcctcct 263
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 303  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 362
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 363  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 422
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                                                                        
Query: 423  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 482
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131

                                              
Query: 483  cccgcgagttcaccagcctcttgccaatgttctc 516
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021

                           
Query: 593  gattgtcctgggaag 607
            ||||| |||||||||
Sbjct: 1020 gattggcctgggaag 1006

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 197  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 253
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 254  acctcctcct 263
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 303  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 362
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 363  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 422
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                                                                        
Query: 423  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 482
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169

                                              
Query: 483  cccgcgagttcaccagcctcttgccaatgttctc 516
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059

                           
Query: 593  gattgtcctgggaag 607
            ||||| |||||||||
Sbjct: 1058 gattggcctgggaag 1044

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 197  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 253
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 254  acctcctcct 263
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 303  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 362
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 363  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 422
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                                                                        
Query: 423  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 482
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168

                                              
Query: 483  cccgcgagttcaccagcctcttgccaatgttctc 516
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058

                           
Query: 593  gattgtcctgggaag 607
            ||||| |||||||||
Sbjct: 1057 gattggcctgggaag 1043

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 197  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 253
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 254  acctcctcct 263
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 303  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 362
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 363  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 422
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                                                                        
Query: 423  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 482
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952

                                              
Query: 483  cccgcgagttcaccagcctcttgccaatgttctc 516
            ||| ||||||||||||||||||||||||||||||
Sbjct: 951  ccctcgagttcaccagcctcttgccaatgttctc 918



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                       
Query: 533 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842

                          
Query: 593 gattgtcctgggaag 607
           ||||| |||||||||
Sbjct: 841 gattggcctgggaag 827

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 197  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 253
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 254  acctcctcct 263
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 303  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 362
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 363  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 422
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                                                                        
Query: 423  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 482
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173

                                              
Query: 483  cccgcgagttcaccagcctcttgccaatgttctc 516
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063

                           
Query: 593  gattgtcctgggaag 607
            ||||| |||||||||
Sbjct: 1062 gattggcctgggaag 1048

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 137    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 197    ggcattttggtcggtgcaaccttccggcacgggca 231
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                          
Query: 300    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 359
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 360    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 419
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                                                                          
Query: 420    tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 479
              |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485

                                                   
Query: 480    cgtcccgcgagttcaccagcctcttgccaatgttctc 516
              | |||| ||||||||||||||||||||||||||||||
Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 155    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 214
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 215    accttccggcacggg 229
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 533    acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 582
              ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 488    gagttcaccagcctcttgccaatgttctc 516
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 137   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 197   ggcattttggtcggtgcaaccttccggcacgggca 231
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                         
Query: 300   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 359
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 360   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 419
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                                                                         
Query: 420   tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 479
             |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362

                                                  
Query: 480   cgtcccgcgagttcaccagcctcttgccaatgttctc 516
             | |||| ||||||||||||||||||||||||||||||
Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 155   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 214
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 215   accttccggcacggg 229
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 533   acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 582
             ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 488   gagttcaccagcctcttgccaatgttctc 516
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 197  ggcattttggtcggtgcaaccttccggcacgggca 231
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 303  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 362
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 363  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 422
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                                                                        
Query: 423  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 482
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137

                                              
Query: 483  cccgcgagttcaccagcctcttgccaatgttctc 516
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027

                           
Query: 593  gattgtcctgggaag 607
            ||||| |||||||||
Sbjct: 1026 gattggcctgggaag 1012

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 197  ggcattttggtcggtgcaaccttccggcacgggca 231
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 305  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 364
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 365  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 424
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                                                                        
Query: 425  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 484
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130

                                            
Query: 485  cgcgagttcaccagcctcttgccaatgttctc 516
            | ||||||||||||||||||||||||||||||
Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022

                           
Query: 593  gattgtcctgggaag 607
            ||||| |||||||||
Sbjct: 1021 gattggcctgggaag 1007

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 137      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 197      ggcattttggtcggtgcaaccttccggcacgggca 231
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 300      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 359
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 360      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 419
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                                                                            
Query: 420      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 479
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624

                                                     
Query: 480      cgtcccgcgagttcaccagcctcttgccaatgttctc 516
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 155      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 214
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 215      accttccggcacggg 229
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 533      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 582
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 488      gagttcaccagcctcttgccaatgttctc 516
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 137      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 197      ggcattttggtcggtgcaaccttccggcacgggca 231
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 300      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 359
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 360      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 419
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                                                                            
Query: 420      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 479
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073

                                                     
Query: 480      cgtcccgcgagttcaccagcctcttgccaatgttctc 516
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 155      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 214
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 215      accttccggcacggg 229
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 533      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 582
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 488      gagttcaccagcctcttgccaatgttctc 516
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 197  ggcattttggtcggtgcaaccttccggcacgggca 231
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 305  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 364
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 365  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 424
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                                                                        
Query: 425  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 484
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165

                                            
Query: 485  cgcgagttcaccagcctcttgccaatgttctc 516
            | ||||||||||||||||||||||||||||||
Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057

                           
Query: 593  gattgtcctgggaag 607
            ||||| |||||||||
Sbjct: 1056 gattggcctgggaag 1042

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  125 bits (63), Expect = 2e-25
 Identities = 171/207 (82%)
 Strand = Plus / Minus

                                                                        
Query: 301  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 360
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 361  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 420
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                                                                        
Query: 421  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 480
            ||  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 887  gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828

                                       
Query: 481  gtcccgcgagttcaccagcctcttgcc 507
             ||| ||||||||||||||||||||||
Sbjct: 827  ctccagcgagttcaccagcctcttgcc 801



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 147  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 206
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 207  tcggtgcaaccttc 220
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 535 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 594
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714

                        
Query: 595 ttgtcctgggaag 607
           ||| || ||||||
Sbjct: 713 ttggccggggaag 701

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                       
Query: 303 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 362
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 363 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 422
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                                                                       
Query: 423 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 482
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386

                                             
Query: 483 cccgcgagttcaccagcctcttgccaatgttctc 516
           ||| ||||||||||||||||||||||||||||||
Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                       
Query: 533 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276

                          
Query: 593 gattgtcctgggaag 607
           ||||| |||||||||
Sbjct: 275 gattggcctgggaag 261

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 303  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 362
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 363  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 422
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                                                                        
Query: 423  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 482
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180

                                              
Query: 483  cccgcgagttcaccagcctcttgccaatgttctc 516
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 137  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 197  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 253
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 254  acctcctcct 263
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 592
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070

                           
Query: 593  gattgtcctgggaag 607
            ||||| |||||||||
Sbjct: 1069 gattggcctgggaag 1055

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 143 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 202
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 203 ttggtcggtgcaaccttccggcacgggca 231
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 308  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 367
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 368  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 427
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 428  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 487
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015

                                
Query: 488  gagttcaccagcctcttgcc 507
            ||||||||||||||||||||
Sbjct: 1014 gagttcaccagcctcttgcc 995



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 147  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 206
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 207  tcggtgcaaccttc 220
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 535 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 594
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908

                        
Query: 595 ttgtcctgggaag 607
           ||| || ||||||
Sbjct: 907 ttggccggggaag 895

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  119 bits (60), Expect = 1e-23
 Identities = 186/228 (81%)
 Strand = Plus / Minus

                                                                        
Query: 380  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 439
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 440  ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 499
            |||||||  |||||||| ||||| ||||| |||   ||||| ||||  ||||| || |||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123

                                                                        
Query: 500  ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 559
            | ||||   ||||||||||  ||| |   ||||||||||||||||||||| |||||||||
Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063

                                                            
Query: 560  acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 607
            ||||| || ||||| || ||||| ||||| ||||| || || ||||||
Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaag 1015

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  103 bits (52), Expect = 7e-19
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                        
Query: 301  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 360
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249

                                                                        
Query: 361  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 420
            ||||| |||  |||| || |||||||| | ||| || || ||||| ||||| || |||||
Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189

                                                                        
Query: 421  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 480
             |  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129

                                    
Query: 481  gtcccgcgagttcaccagcctctt 504
             ||| |||||||||||||||||||
Sbjct: 1128 ctccagcgagttcaccagcctctt 1105



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 147  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 206
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 207  tcggtgcaaccttc 220
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                        
Query: 535  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 594
            |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015

                         
Query: 595  ttgtcctgggaag 607
            ||| || ||||||
Sbjct: 1014 ttggccggggaag 1002

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 137 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 197 ggcattttggtcggtgcaaccttccggcacgggca 231
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 308  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 367
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 368  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 427
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 428  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 487
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985

                             
Query: 488  gagttcaccagcctctt 504
            |||||||||||||||||
Sbjct: 984  gagttcaccagcctctt 968



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 147  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 206
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 207  tcggtgcaaccttc 220
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 535 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 594
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878

                        
Query: 595 ttgtcctgggaag 607
           ||| || ||||||
Sbjct: 877 ttggccggggaag 865

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 309 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 368
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 369 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 428
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 429 actctagcagcttctcgactgtcatctttggctgctcgaa 468
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 309  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 368
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 369  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 428
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 429  actctagcagcttctcgactgtcatctttggctgctcgaa 468
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 309  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 368
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 369  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 428
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 429  actctagcagcttctcgactgtcatctttggctgctcgaa 468
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 380  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 439
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 440  ttctcgactgtcatctttggctgctcgaa 468
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                        
Query: 529  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 588
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184

                               
Query: 589  aatggattgtcctgggaag 607
             ||||| || || ||||||
Sbjct: 1183 gatggactgccccgggaag 1165

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 326 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 385
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 386 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 441
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 137     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 197     ggcattttggtcggtgcaaccttccggcacgggca 231
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 137   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 196
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 197   ggcattttggtcggtgcaaccttccggcacgggca 231
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 571  cagagcaccgaaaaagtcaatggattgtcctgggaag 607
            ||||||||||||||||||||||||||| || ||||||
Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaag 1077

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 337  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 396
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 397  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 456
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 457  tggctgctcgaa 468
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 551  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 607
            ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||
Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaag 2667

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 551  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 607
            ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||
Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaag 977

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 329  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 378
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 342   catcacccagagctgcctggct 363
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 42    aatatatttagagatatattaa 63
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    tatatttagagatatattaac 64
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 571  cagagcaccgaaaaagtcaatggattgtcctgggaag 607
            |||||||||||| || ||||| |||||||| ||||||
Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaag 1090

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    tatatttagagatatattaac 64
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 575 gcaccgaaaaagtcaatggattgtcctgggaag 607
           |||||||||||||| || |||||||| ||||||
Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaag 313

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 113     aaacatcagatattaaaagtg 133
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   atgcagcaagagatggtgggt 284
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 380  agctgcacacgcttgacattgtcctgctc 408
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 113     aaacatcagatattaaaagtg 133
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    aaacatcagatattaaaagtg 133
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 44   tatatttagagatatattaac 64
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      atgataagtaggtgtattgg 20
              ||||||||||||||||||||
Sbjct: 109371 atgataagtaggtgtattgg 109390

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   cctttacctcctcctatgca 268
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  catcacccagagctgcctggctca 365
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  cctttacctcctcctatgca 268
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 338  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 397
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 398  ttgtcctgctcctggacgagcatg 421
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   cctttacctcctcctatgca 268
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

---

>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   ggtctttgccaatgggtata 38
            ||||||||||||||||||||
Sbjct: 2247 ggtctttgccaatgggtata 2266

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 gtcagcaagctgcacacgct 392
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    tcagatattaaaagtggcat 137
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    tcagatattaaaagtggcat 137
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tcagatattaaaagtggcat 137
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  catcacccagagctgcctggctca 365
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    aatatatttagagatatatt 61
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 392    ttgacattgtcctgctcctg 411
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      atgataagtaggtgtattgg 20
              ||||||||||||||||||||
Sbjct: 149521 atgataagtaggtgtattgg 149502

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  catcacccagagctgcctggctca 365
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 146  ggtgtaaaggcagctgccgtcgtcgctc 173
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 66    aaacatgcccagcaatcgcttgga 89
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   cctttacctcctcctatgca 268
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  catcacccagagctgcctggctca 365
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  catcacccagagctgcctggctca 365
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  catcacccagagctgcctggctca 365
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   tggcatgcttaaaaggtgta 151
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      atgataagtaggtgtattgg 20
              ||||||||||||||||||||
Sbjct: 131096 atgataagtaggtgtattgg 131077

---

>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    atgataagtaggtgtattgg 20
            ||||||||||||||||||||
Sbjct: 2350 atgataagtaggtgtattgg 2331

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    ttgacattgtcctgctcctg 411
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  catcacccagagctgcctggctca 365
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 cttgctgtgctcctttacctcctc 261
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   cctttacctcctcctatgca 268
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    aatatatttagagatatatt 61
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 117    atcagatattaaaagtggcatgct 140
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 548  tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 607
            ||||||||||| || ||||| | ||  || ||||||||||| || |||||||| ||||||
Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,408,049
Number of Sequences: 3902068
Number of extensions: 4408049
Number of successful extensions: 84503
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 84140
Number of HSP's gapped (non-prelim): 310
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---