ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63b03 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 166 bits (421), Expect = 3e-41 Identities = 83/90 (92%), Positives = 88/90 (97%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 QASQIRQIRRKMVEIMANQAS+CDLKELVSKFIPEVIGKEIEKATSSIFPLQNV+VRKVK Sbjct: 156 QASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKLER 243 ILKAPKFD+GKLMEVHGDY KED+G KL+R Sbjct: 216 ILKAPKFDLGKLMEVHGDYAKEDIGTKLDR 245
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 149 bits (375), Expect = 6e-36 Identities = 71/90 (78%), Positives = 82/90 (91%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q+SQIRQIRRKM EIM +AS+CDLKELV+KFIPE IG+EIEKAT I+PLQNV++RKVK Sbjct: 156 QSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKLER 243 ILKAPKFD+GKLMEVHGDY EDVGVK++R Sbjct: 216 ILKAPKFDLGKLMEVHGDYTAEDVGVKVDR 245
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 148 bits (374), Expect = 7e-36 Identities = 75/90 (83%), Positives = 83/90 (92%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q+SQI+QIRRKM EIM QA TCDLKELV KFIPE IG+EIEKATSSI+PLQNV++RKVK Sbjct: 156 QSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKLER 243 ILKAPKFDIGKLMEVHGDY+ EDVGVKL+R Sbjct: 216 ILKAPKFDIGKLMEVHGDYS-EDVGVKLDR 244
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 148 bits (374), Expect = 7e-36 Identities = 73/90 (81%), Positives = 83/90 (92%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q+SQIRQIRRKM EIM NQA +CDLK+LV KFIPE IG+EIEKATSSI+PLQNV++RKVK Sbjct: 156 QSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKLER 243 ILKAPKFD+GKLMEVHGDYN ED+G KL+R Sbjct: 216 ILKAPKFDLGKLMEVHGDYN-EDIGTKLDR 244
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 137 bits (345), Expect = 2e-32 Identities = 69/91 (75%), Positives = 80/91 (87%), Gaps = 1/91 (1%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQ-ASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKV 336 Q+SQIRQIR KM EIM + AS+CDLKELV+KFIPE IGK+IEKAT I+PLQNV++RKV Sbjct: 156 QSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKV 215 Query: 335 KILKAPKFDIGKLMEVHGDYNKEDVGVKLER 243 KILKAPKFD+ KLMEVHGDY EDVGVK++R Sbjct: 216 KILKAPKFDLRKLMEVHGDYTAEDVGVKVDR 246
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 117 bits (293), Expect = 2e-26 Identities = 63/89 (70%), Positives = 75/89 (84%), Gaps = 1/89 (1%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSS-IFPLQNVYVRKV 336 Q+SQI IRRKM EIM +A TCDLKELV+KFIPEVIGKEI++ S I+PLQ+ ++RKV Sbjct: 154 QSSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKV 212 Query: 335 KILKAPKFDIGKLMEVHGDYNKEDVGVKL 249 KILKAPKFD+ KLMEVHGDYN E+VG K+ Sbjct: 213 KILKAPKFDLMKLMEVHGDYN-EEVGAKI 240
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 115 bits (288), Expect = 7e-26 Identities = 57/88 (64%), Positives = 72/88 (81%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q+SQIR IR+KM +++ NQ S+C ++ELV K IPEVIG+EIE+AT SIFPLQNV VRKVK Sbjct: 156 QSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKL 249 ILKAPK D KL+E+HG+ +DVG K+ Sbjct: 216 ILKAPKHDAQKLLELHGE--SQDVGTKV 241
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 111 bits (278), Expect = 1e-24 Identities = 55/88 (62%), Positives = 72/88 (81%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q+SQIR I +KM +++ NQA+ C +KELV K IPEVIG+ IEKAT++I+PLQNV+VRKVK Sbjct: 156 QSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKL 249 ILKAPK D KL+E+HG+ +DVG K+ Sbjct: 216 ILKAPKHDAQKLLELHGE--SQDVGSKV 241
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 110 bits (275), Expect = 2e-24 Identities = 55/96 (57%), Positives = 73/96 (76%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KMVEIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGD------YNKEDVGVKLER 243 +LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVER 251
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 110 bits (274), Expect = 3e-24 Identities = 55/98 (56%), Positives = 72/98 (73%), Gaps = 8/98 (8%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGD--------YNKEDVGVKLER 243 +LK PKF++GKLME+HG+ +D G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVER 253
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 110 bits (274), Expect = 3e-24 Identities = 54/98 (55%), Positives = 73/98 (74%), Gaps = 8/98 (8%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ +GK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGD--------YNKEDVGVKLER 243 +LK PKF++GKLME+HG+ + +D G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 253
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 108 bits (271), Expect = 7e-24 Identities = 54/96 (56%), Positives = 72/96 (75%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYN------KEDVGVKLER 243 +LK PKF++GKLME+HG+ ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 251
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 108 bits (270), Expect = 9e-24 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 9/99 (9%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ +GK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYN---------KEDVGVKLER 243 +LK PKF++GKLME+HG+ + D G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVER 254
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 108 bits (270), Expect = 9e-24 Identities = 53/96 (55%), Positives = 73/96 (76%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 243 +LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 251
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 108 bits (270), Expect = 9e-24 Identities = 53/96 (55%), Positives = 73/96 (76%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 243 +LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 251
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 108 bits (270), Expect = 9e-24 Identities = 54/96 (56%), Positives = 73/96 (76%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGD------YNKEDVGVKLER 243 +LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVER 251
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 108 bits (270), Expect = 9e-24 Identities = 53/96 (55%), Positives = 73/96 (76%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 243 +LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 251
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 108 bits (270), Expect = 9e-24 Identities = 53/96 (55%), Positives = 73/96 (76%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 153 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 212 Query: 332 ILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 243 +LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 213 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 248
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 108 bits (269), Expect = 1e-23 Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYN------KEDVGVKLER 243 +LK PKF++GKLME+HG+ ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVER 251
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 108 bits (269), Expect = 1e-23 Identities = 53/96 (55%), Positives = 72/96 (75%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 243 +LK PKF++GKLME+HG+ ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 251
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 108 bits (269), Expect = 1e-23 Identities = 53/96 (55%), Positives = 72/96 (75%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 243 +LK PKF++GKLME+HG+ ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 251
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 108 bits (269), Expect = 1e-23 Identities = 49/88 (55%), Positives = 70/88 (79%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q+S++R+ R+KM+EI+ + S C L +L SK IPEVIG+EIEK+T +IFPLQNV++RKVK Sbjct: 156 QSSKLREARKKMIEIIEREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKL 249 +LK PKFD G L+ +HG+ + E+ G K+ Sbjct: 216 LLKQPKFDWGSLLALHGEGSTEEKGKKV 243
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 107 bits (267), Expect = 2e-23 Identities = 52/96 (54%), Positives = 73/96 (76%), Gaps = 6/96 (6%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK++EKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 243 +LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 251
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 99.0 bits (245), Expect = 7e-21 Identities = 48/88 (54%), Positives = 63/88 (71%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q+S IR IR+ + EI+ + L +L SK IPEVI KEIE AT IFPLQN++VRKVK Sbjct: 156 QSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKL 249 +LK PKFD+G LM +HG+ + E+ G K+ Sbjct: 216 LLKQPKFDVGALMALHGEGSGEEKGKKV 243
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 98.2 bits (243), Expect = 1e-20 Identities = 48/88 (54%), Positives = 63/88 (71%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q+S IR IR+ + EI+ + L +L SK IPEVI KEIE AT IFPLQN++VRKVK Sbjct: 156 QSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVK 215 Query: 332 ILKAPKFDIGKLMEVHGDYNKEDVGVKL 249 +LK PKFD+G LM +HG+ + E+ G K+ Sbjct: 216 LLKQPKFDVGALMALHGEGSGEEKGKKV 243
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 98.2 bits (243), Expect = 1e-20 Identities = 43/78 (55%), Positives = 64/78 (82%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q +Q++ IR+KMVEI++ + S+ D+KE+V+K IP+ IGK+IEK+ I+PL +V + KVK Sbjct: 156 QHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVK 215 Query: 332 ILKAPKFDIGKLMEVHGD 279 +LK PKFD+GKLME+HG+ Sbjct: 216 VLKKPKFDVGKLMELHGE 233
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 95.1 bits (235), Expect = 1e-19 Identities = 42/78 (53%), Positives = 61/78 (78%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 + S+IR+IR +M+ + + + CDLKE+VSK IP+ IGK+IEK S ++PLQ VY+RKVK Sbjct: 154 KTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVK 213 Query: 332 ILKAPKFDIGKLMEVHGD 279 I+K PK D+G+L ++HGD Sbjct: 214 IIKRPKVDLGRLHDLHGD 231
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 92.8 bits (229), Expect = 5e-19 Identities = 41/78 (52%), Positives = 60/78 (76%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q SQ+R+IR +M +I+ N+ S DLK+LV+K + I K+IEK+ I+PL +VY+RKVK Sbjct: 159 QQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVK 218 Query: 332 ILKAPKFDIGKLMEVHGD 279 +LK P+FD+ KL+E+HGD Sbjct: 219 VLKKPRFDVSKLLELHGD 236
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 89.0 bits (219), Expect = 7e-18 Identities = 40/78 (51%), Positives = 57/78 (73%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q SQI+ IR KM I+ + ++ DLK +V K +P+ I K+IEKA ++PL +VY+RKVK Sbjct: 159 QHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVK 218 Query: 332 ILKAPKFDIGKLMEVHGD 279 +LK P+FD+ LME+HGD Sbjct: 219 VLKKPRFDLSSLMELHGD 236
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/66 (36%), Positives = 38/66 (57%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 130 QTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIK 189 Query: 332 ILKAPK 315 +L+ P+ Sbjct: 190 VLEEPQ 195
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 46.2 bits (108), Expect = 5e-05 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 131 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIK 190 Query: 332 ILKAPK 315 +L P+ Sbjct: 191 VLGEPE 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 45.4 bits (106), Expect = 9e-05 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 132 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIK 191 Query: 332 ILKAPK 315 +L P+ Sbjct: 192 VLGEPE 197
>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae| Length = 211 Score = 42.7 bits (99), Expect = 6e-04 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIP----EVIGKEIEKATSSIFPLQNVYV 345 + SQ R IR++M +++ A CD E + + + E I ++I++A I+P++ + Sbjct: 123 KTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEI 182 Query: 344 RKVKILKAP 318 RK ++L+ P Sbjct: 183 RKTEVLEEP 191
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 Q SQ R IR+ + +I+ +A + + V + + I EI K I+P++ VRK+K Sbjct: 134 QTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIK 193 Query: 332 ILKAP 318 +L P Sbjct: 194 VLAEP 198
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 39.3 bits (90), Expect = 0.006 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = -3 Query: 506 SQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 327 SQ IR+ + +I +A D + V I + +I + I+PL+ V + K K+L Sbjct: 133 SQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLL 192 Query: 326 KAPK 315 KAPK Sbjct: 193 KAPK 196
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 39.3 bits (90), Expect = 0.006 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -3 Query: 506 SQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 327 SQ +IR+ + I++ +AS E V + + +I + I+PL+ V V K K+L Sbjct: 130 SQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLL 189 Query: 326 KAP 318 KAP Sbjct: 190 KAP 192
>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae| Length = 213 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/86 (25%), Positives = 43/86 (50%) Frame = -3 Query: 509 ASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 330 ASQ + IRR M++++ A ++L+ + + I I+PL+ V ++K + Sbjct: 128 ASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKTTL 187 Query: 329 LKAPKFDIGKLMEVHGDYNKEDVGVK 252 P+ ++ E D ++EDV V+ Sbjct: 188 EARPE-EVAAEEETAVDVDEEDVDVE 212
>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae| Length = 211 Score = 38.5 bits (88), Expect = 0.011 Identities = 19/65 (29%), Positives = 37/65 (56%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 + SQ R IR M +I+ +AS+ + + + + + + EI K I+P++ V +RK++ Sbjct: 133 KTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIE 192 Query: 332 ILKAP 318 +L P Sbjct: 193 LLAEP 197
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/72 (29%), Positives = 39/72 (54%) Frame = -3 Query: 506 SQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 327 SQ IR+ + E ++ +AS + + + + EI +A I+PL+ + K K+L Sbjct: 131 SQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVL 190 Query: 326 KAPKFDIGKLME 291 K P+ ++GK +E Sbjct: 191 KVPE-NLGKQVE 201
>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae| Length = 204 Score = 37.4 bits (85), Expect = 0.024 Identities = 19/65 (29%), Positives = 36/65 (55%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 ++SQ++ IR MV+I+ +AS D + + + I + I + I+PL+ V +RK + Sbjct: 130 RSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQ 189 Query: 332 ILKAP 318 + P Sbjct: 190 VEAMP 194
>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae| Length = 203 Score = 37.4 bits (85), Expect = 0.024 Identities = 19/65 (29%), Positives = 36/65 (55%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 ++SQ++ IR MVEI+ +A+ D + + + I + I + I+PL+ V +RK + Sbjct: 130 RSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTE 189 Query: 332 ILKAP 318 + P Sbjct: 190 VETIP 194
>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae| Length = 221 Score = 36.2 bits (82), Expect = 0.054 Identities = 15/63 (23%), Positives = 34/63 (53%) Frame = -3 Query: 506 SQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 327 +Q +R+KM+E + +A+ D + + + + + ++ I P++ V + K+K+L Sbjct: 141 AQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVL 200 Query: 326 KAP 318 K P Sbjct: 201 KYP 203
>RS3A_METTH (O27630) 30S ribosomal protein S3Ae| Length = 195 Score = 34.3 bits (77), Expect = 0.20 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = -3 Query: 512 QASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 333 ++SQ + +R+ + E + AS +ELV + I EI I+PL+ V + K + Sbjct: 130 KSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSR 189 Query: 332 ILKAP 318 +L+ P Sbjct: 190 VLEEP 194
>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae| Length = 215 Score = 33.5 bits (75), Expect = 0.35 Identities = 18/70 (25%), Positives = 36/70 (51%) Frame = -3 Query: 494 QIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 315 QIR+ + + + N+ + E V I + I ++ AT I+PL+ + VRK +++ Sbjct: 137 QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMISATKDIYPLKKIEVRKSELV---- 192 Query: 314 FDIGKLMEVH 285 + + E+H Sbjct: 193 -SLSGISEIH 201
>RS3A_METJA (P54059) 30S ribosomal protein S3Ae| Length = 222 Score = 32.7 bits (73), Expect = 0.60 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -3 Query: 503 QIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 324 Q IR+KM EI+ A + V + + ++I+ IFP++NV + K ++L Sbjct: 140 QKSDIRKKMEEIIKAMAKEKTFPQYVQAMLFGEMAEKIKNECKKIFPIKNVIIYKSEVLS 199 Query: 323 APK 315 K Sbjct: 200 LAK 202
>DXR_PROMM (Q7V6J8) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 412 Score = 30.8 bits (68), Expect = 2.3 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 120 NQVYVVHNLESIAHTSYESRH*TSL--FSWSCNLNPCLICLSWPLQLHT 260 NQ+ +V + +SI H+ E + L W P L CLSWP +L T Sbjct: 247 NQIEIVIHPQSIIHSMIELADSSVLGQLGWPDMKLPILYCLSWPERLET 295
>SUHW_DROVI (Q08876) Protein suppressor of hairy wing| Length = 899 Score = 30.4 bits (67), Expect = 3.0 Identities = 15/24 (62%), Positives = 15/24 (62%) Frame = +3 Query: 162 TSYESRH*TSLFSWSCNLNPCLIC 233 TSYE RH SWSCN PC IC Sbjct: 301 TSYE-RHIFITHSWSCNDYPCSIC 323
>NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 576 Score = 30.0 bits (66), Expect = 3.9 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 189 SLFSWSCNLNPCLICLSWPLQLHTDILLVVVTMYLHQLPNIKL 317 S+ SW LNP +ICL + L++ T + ++ + + L N+ L Sbjct: 435 SMLSWLMFLNPSMICLPFDLKMLTLFVCILGGLIGYLLSNVSL 477
>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 580 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 189 SLFSWSCNLNPCLICLSWPLQLHTDILLVVVTMYLHQLPNIKL 317 S+ SW LNP +ICL ++L T + +V + + + ++KL Sbjct: 439 SMLSWLMFLNPAMICLPLEMKLLTLFVCIVGGLMGYLISDVKL 481
>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae| Length = 209 Score = 29.6 bits (65), Expect = 5.0 Identities = 12/61 (19%), Positives = 32/61 (52%) Frame = -3 Query: 509 ASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 330 A++ ++R K++ + + + L EL I + + +I ++P++ + +RK ++ Sbjct: 131 ANKRGEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEV 190 Query: 329 L 327 L Sbjct: 191 L 191
>TNR12_MOUSE (Q9CR75) Tumor necrosis factor receptor superfamily member 12A| precursor (Fibroblast growth factor-inducible immediate-early response protein 14) (FGF-inducible 14) (Fibroblast growth factor-regulated protein 2) (Tweak-receptor) (TweakR) Length = 129 Score = 29.3 bits (64), Expect = 6.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 198 SWSCNLNPCLICLSWPLQLHTDILL 272 SWS +L+ C+ C S P + H+D L Sbjct: 41 SWSADLDKCMDCASCPARPHSDFCL 65
>PTPRJ_HUMAN (Q12913) Receptor-type tyrosine-protein phosphatase eta precursor (EC| 3.1.3.48) (Protein-tyrosine phosphatase eta) (R-PTP-eta) (HPTP eta) (Protein-tyrosine phosphatase receptor type J) (Density-enhanced phosphatase 1) (DEP-1) (CD148 antigen) Length = 1337 Score = 28.9 bits (63), Expect = 8.6 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 9/56 (16%) Frame = +1 Query: 316 FGALRILTLRTYTFWRGKMLD-----VAFSISLPMTSGI----NFETSSFKSQVEA 456 FGAL I+T+ + FWR K D V+FS P S + NFE K Q ++ Sbjct: 982 FGALVIVTVGGFIFWRKKRKDAKNNEVSFSQIKPKKSKLIRVENFEAYFKKQQADS 1037
>RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae| Length = 215 Score = 28.9 bits (63), Expect = 8.6 Identities = 12/56 (21%), Positives = 31/56 (55%) Frame = -3 Query: 494 QIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 327 +IR+ + + ++ S + V I + ++ +AT +I+PL+ + +RK +++ Sbjct: 137 EIRKALTSFIVSKGSQLSYADFVRYLIGDDSYNDMVEATKNIYPLRKIEIRKSELV 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,312,470 Number of Sequences: 219361 Number of extensions: 959568 Number of successful extensions: 2420 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 2390 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2417 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
