ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63b03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464995.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1063 Score = 262 bits (132), Expect = 1e-66 Identities = 244/281 (86%), Gaps = 3/281 (1%) Strand = Plus / Minus Query: 234 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 293 |||||| ||||| |||| ||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 779 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 723 Query: 294 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggacatacac 353 |||||||||||||| |||||||||||| || || | |||||| |||||||||| |||| Sbjct: 722 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacac 663 Query: 354 attctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacctcagg 413 ||| |||||||| || || ||||| |||| ||||||||||||||| |||||||| ||||| Sbjct: 662 attttggagagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagg 603 Query: 414 tataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccataatctc 473 || |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 602 gatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctc 543 Query: 474 aaccatcttncggcgaatctgtctgatctggctcgcctgag 514 ||||||||| ||||| ||||| | ||||||||| ||||||| Sbjct: 542 aaccatcttccggcggatctgccggatctggctagcctgag 502
>ref|XM_506775.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1115_D03.49 mRNA Length = 1171 Score = 262 bits (132), Expect = 1e-66 Identities = 244/281 (86%), Gaps = 3/281 (1%) Strand = Plus / Minus Query: 234 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 293 |||||| ||||| |||| ||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 815 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 759 Query: 294 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggacatacac 353 |||||||||||||| |||||||||||| || || | |||||| |||||||||| |||| Sbjct: 758 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacac 699 Query: 354 attctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacctcagg 413 ||| |||||||| || || ||||| |||| ||||||||||||||| |||||||| ||||| Sbjct: 698 attttggagagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagg 639 Query: 414 tataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccataatctc 473 || |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 638 gatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctc 579 Query: 474 aaccatcttncggcgaatctgtctgatctggctcgcctgag 514 ||||||||| ||||| ||||| | ||||||||| ||||||| Sbjct: 578 aaccatcttccggcggatctgccggatctggctagcctgag 538
>dbj|AK099131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M05, full insert sequence Length = 1063 Score = 262 bits (132), Expect = 1e-66 Identities = 244/281 (86%), Gaps = 3/281 (1%) Strand = Plus / Minus Query: 234 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 293 |||||| ||||| |||| ||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 779 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 723 Query: 294 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggacatacac 353 |||||||||||||| |||||||||||| || || | |||||| |||||||||| |||| Sbjct: 722 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacac 663 Query: 354 attctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacctcagg 413 ||| |||||||| || || ||||| |||| ||||||||||||||| |||||||| ||||| Sbjct: 662 attttggagagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagg 603 Query: 414 tataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccataatctc 473 || |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 602 gatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctc 543 Query: 474 aaccatcttncggcgaatctgtctgatctggctcgcctgag 514 ||||||||| ||||| ||||| | ||||||||| ||||||| Sbjct: 542 aaccatcttccggcggatctgccggatctggctagcctgag 502
>dbj|AK059647.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C03, full insert sequence Length = 1171 Score = 254 bits (128), Expect = 2e-64 Identities = 243/281 (86%), Gaps = 3/281 (1%) Strand = Plus / Minus Query: 234 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 293 |||||| ||||| |||| ||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 815 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 759 Query: 294 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggacatacac 353 |||||||||||||| |||||||||||| || || | |||||| |||||||||| |||| Sbjct: 758 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacac 699 Query: 354 attctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacctcagg 413 ||| |||||||| || || ||||| |||| ||||||||||||||| |||||||| ||||| Sbjct: 698 attttggagagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagg 639 Query: 414 tataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccataatctc 473 || |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 638 gatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctc 579 Query: 474 aaccatcttncggcgaatctgtctgatctggctcgcctgag 514 ||||||||| ||| | ||||| | ||||||||| ||||||| Sbjct: 578 aaccatcttccggaggatctgccggatctggctagcctgag 538
>gb|AF052503.1|AF052503 Oryza sativa S-phase-specific ribosomal protein (RSPSP94) mRNA, complete cds Length = 1027 Score = 242 bits (122), Expect = 9e-61 Identities = 222/255 (87%), Gaps = 3/255 (1%) Strand = Plus / Minus Query: 234 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 293 |||||| ||||| |||| ||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 776 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 720 Query: 294 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggacatacac 353 |||||||||||||| |||||||||||| || || | |||||| |||||||||| |||| Sbjct: 719 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacac 660 Query: 354 attctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacctcagg 413 ||| |||||||| || || ||||| |||| ||||||||||||||| |||||||| ||||| Sbjct: 659 attttggagagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagg 600 Query: 414 tataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccataatctc 473 || |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 599 gatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctc 540 Query: 474 aaccatcttncggcg 488 ||||||||| ||||| Sbjct: 539 aaccatcttccggcg 525
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 210 bits (106), Expect = 3e-51 Identities = 180/205 (87%) Strand = Plus / Plus Query: 289 acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggaca 348 ||||||||||||||||||| |||||||||||| || || | |||||| |||||||||| Sbjct: 10823054 acctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatg 10823113 Query: 349 tacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacc 408 ||||||| |||||||| || || ||||| |||| ||||||||||||||| |||||||| Sbjct: 10823114 aacacattttggagagggaatatacttgaagttgacttctcgatctcctttccaatgact 10823173 Query: 409 tcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccata 468 ||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 10823174 tcagggatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccatg 10823233 Query: 469 atctcaaccatcttncggcgaatct 493 |||||||||||||| ||||| |||| Sbjct: 10823234 atctcaaccatcttccggcggatct 10823258 Score = 42.1 bits (21), Expect = 1.8 Identities = 50/59 (84%), Gaps = 3/59 (5%) Strand = Plus / Plus Query: 234 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacct 292 |||||| ||||| |||| ||||| ||||||||| ||||||| ||||||| ||||||| Sbjct: 10822097 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacct 10822152
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 210 bits (106), Expect = 3e-51 Identities = 180/205 (87%) Strand = Plus / Plus Query: 289 acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggaca 348 ||||||||||||||||||| |||||||||||| || || | |||||| |||||||||| Sbjct: 29253 acctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatg 29312 Query: 349 tacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacc 408 ||||||| |||||||| || || ||||| |||| ||||||||||||||| |||||||| Sbjct: 29313 aacacattttggagagggaatatacttgaagttgacttctcgatctcctttccaatgact 29372 Query: 409 tcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccata 468 ||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 29373 tcagggatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccatg 29432 Query: 469 atctcaaccatcttncggcgaatct 493 |||||||||||||| ||||| |||| Sbjct: 29433 atctcaaccatcttccggcggatct 29457 Score = 42.1 bits (21), Expect = 1.8 Identities = 50/59 (84%), Gaps = 3/59 (5%) Strand = Plus / Plus Query: 234 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacct 292 |||||| ||||| |||| ||||| ||||||||| ||||||| ||||||| ||||||| Sbjct: 28296 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacct 28351
>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_D03 Length = 169378 Score = 210 bits (106), Expect = 3e-51 Identities = 180/205 (87%) Strand = Plus / Plus Query: 289 acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggaca 348 ||||||||||||||||||| |||||||||||| || || | |||||| |||||||||| Sbjct: 162535 acctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatg 162594 Query: 349 tacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacc 408 ||||||| |||||||| || || ||||| |||| ||||||||||||||| |||||||| Sbjct: 162595 aacacattttggagagggaatatacttgaagttgacttctcgatctcctttccaatgact 162654 Query: 409 tcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccata 468 ||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 162655 tcagggatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccatg 162714 Query: 469 atctcaaccatcttncggcgaatct 493 |||||||||||||| ||||| |||| Sbjct: 162715 atctcaaccatcttccggcggatct 162739 Score = 42.1 bits (21), Expect = 1.8 Identities = 50/59 (84%), Gaps = 3/59 (5%) Strand = Plus / Plus Query: 234 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacct 292 |||||| ||||| |||| ||||| ||||||||| ||||||| ||||||| ||||||| Sbjct: 161578 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacct 161633
>dbj|D26060.1|RICT151 Oryza sativa mRNA for cyc07, complete cds Length = 1065 Score = 180 bits (91), Expect = 3e-42 Identities = 201/238 (84%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||| | |||||| | ||||| ||||| || || || ||||| Sbjct: 799 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 740 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 || ||||||||| |||||||||| || || ||||| || ||||| |||||||| || ||| Sbjct: 739 actttgcggacaaacacattctgaagggggaaaatactggatgtcgccttctcaatttcc 680 Query: 397 ttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcc 456 || ||||| || ||||| || || |||||||| ||||||||||| |||||| |||||||| Sbjct: 679 ttcccaataacttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcc 620 Query: 457 tggttggccataatctcaaccatcttncggcgaatctgtctgatctggctcgcctgag 514 ||||||||||| || ||||||||||| || ||||||||||||||||| ||||| |||| Sbjct: 619 tggttggccatgatttcaaccatcttgcgacgaatctgtctgatctgactcgcttgag 562
>dbj|AK104699.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C03, full insert sequence Length = 942 Score = 180 bits (91), Expect = 3e-42 Identities = 201/238 (84%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||| | |||||| | ||||| ||||| || || || ||||| Sbjct: 685 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 626 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 || ||||||||| |||||||||| || || ||||| || ||||| |||||||| || ||| Sbjct: 625 actttgcggacaaacacattctgaagggggaaaatactggatgtcgccttctcaatttcc 566 Query: 397 ttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcc 456 || ||||| || ||||| || || |||||||| ||||||||||| |||||| |||||||| Sbjct: 565 ttcccaataacttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcc 506 Query: 457 tggttggccataatctcaaccatcttncggcgaatctgtctgatctggctcgcctgag 514 ||||||||||| || ||||||||||| || ||||||||||||||||| ||||| |||| Sbjct: 505 tggttggccatgatttcaaccatcttgcgacgaatctgtctgatctgactcgcttgag 448
>dbj|AK104243.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D02, full insert sequence Length = 1032 Score = 180 bits (91), Expect = 3e-42 Identities = 201/238 (84%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||| | |||||| | ||||| ||||| || || || ||||| Sbjct: 775 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 716 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 || ||||||||| |||||||||| || || ||||| || ||||| |||||||| || ||| Sbjct: 715 actttgcggacaaacacattctgaagggggaaaatactggatgtcgccttctcaatttcc 656 Query: 397 ttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcc 456 || ||||| || ||||| || || |||||||| ||||||||||| |||||| |||||||| Sbjct: 655 ttcccaataacttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcc 596 Query: 457 tggttggccataatctcaaccatcttncggcgaatctgtctgatctggctcgcctgag 514 ||||||||||| || ||||||||||| || ||||||||||||||||| ||||| |||| Sbjct: 595 tggttggccatgatttcaaccatcttgcgacgaatctgtctgatctgactcgcttgag 538
>dbj|AK069251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013H23, full insert sequence Length = 1097 Score = 180 bits (91), Expect = 3e-42 Identities = 201/238 (84%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||| | |||||| | ||||| ||||| || || || ||||| Sbjct: 776 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 717 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 || ||||||||| |||||||||| || || ||||| || ||||| |||||||| || ||| Sbjct: 716 actttgcggacaaacacattctgaagggggaaaatactggatgtcgccttctcaatttcc 657 Query: 397 ttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcc 456 || ||||| || ||||| || || |||||||| ||||||||||| |||||| |||||||| Sbjct: 656 ttcccaataacttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcc 597 Query: 457 tggttggccataatctcaaccatcttncggcgaatctgtctgatctggctcgcctgag 514 ||||||||||| || ||||||||||| || ||||||||||||||||| ||||| |||| Sbjct: 596 tggttggccatgatttcaaccatcttgcgacgaatctgtctgatctgactcgcttgag 539
>gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds Length = 342 Score = 151 bits (76), Expect = 3e-33 Identities = 221/269 (82%), Gaps = 3/269 (1%) Strand = Plus / Minus Query: 235 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 294 ||||| ||||| || | ||||||||| ||||||||||||| ||||||| || |||||| Sbjct: 293 tcagcaggcctgtcaagcttcacaccaacatcctccttgt---agtcaccgtgaacctcc 237 Query: 295 atcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggacatacaca 354 || | |||||| | || ||||| || || || |||||||| ||||||||||| ||||| Sbjct: 236 atgagcttccccaggtcgaacttgggggccttcaggatcttcaccttgcggacgtacacg 177 Query: 355 ttctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacctcaggt 414 |||||||| || || |||||||| || |||||||| |||||||| || || |||||||| Sbjct: 176 ttctggagggggaagatgcttgaggtggccttctcaatctcctttccgatcacctcaggg 117 Query: 415 ataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccataatctca 474 || || || || ||||| |||||||||||| ||| ||| |||||| |||| |||||| Sbjct: 116 atgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctca 57 Query: 475 accatcttncggcgaatctgtctgatctg 503 |||||||| ||||| |||||||||||||| Sbjct: 56 accatcttgcggcggatctgtctgatctg 28
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 141 bits (71), Expect = 3e-30 Identities = 172/206 (83%) Strand = Plus / Minus Query: 289 acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggaca 348 |||||||| | |||||| | ||||| ||||| || || || ||||| || ||||||||| Sbjct: 5245062 acctccatgagcttccccaggtcaaatttcggggcctttagaatcttcactttgcggaca 5245003 Query: 349 tacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacc 408 |||||||||| || || ||||| || ||||| |||||||| || ||||| ||||| || Sbjct: 5245002 aacacattctgaagggggaaaatactggatgtcgccttctcaatttccttcccaataact 5244943 Query: 409 tcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccata 468 ||||| || || |||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct: 5244942 tcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcctggttggccatg 5244883 Query: 469 atctcaaccatcttncggcgaatctg 494 || ||||||||||| || |||||||| Sbjct: 5244882 atttcaaccatcttgcgacgaatctg 5244857
>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3 clone OSJNBa0021H20, complete sequence Length = 133079 Score = 141 bits (71), Expect = 3e-30 Identities = 172/206 (83%) Strand = Plus / Minus Query: 289 acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggaca 348 |||||||| | |||||| | ||||| ||||| || || || ||||| || ||||||||| Sbjct: 68464 acctccatgagcttccccaggtcaaatttcggggcctttagaatcttcactttgcggaca 68405 Query: 349 tacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacc 408 |||||||||| || || ||||| || ||||| |||||||| || ||||| ||||| || Sbjct: 68404 aacacattctgaagggggaaaatactggatgtcgccttctcaatttccttcccaataact 68345 Query: 409 tcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccata 468 ||||| || || |||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct: 68344 tcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcctggttggccatg 68285 Query: 469 atctcaaccatcttncggcgaatctg 494 || ||||||||||| || |||||||| Sbjct: 68284 atttcaaccatcttgcgacgaatctg 68259
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 141 bits (71), Expect = 3e-30 Identities = 172/206 (83%) Strand = Plus / Plus Query: 289 acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggaca 348 |||||||| | |||||| | ||||| ||||| || || || ||||| || ||||||||| Sbjct: 11456 acctccatgagcttccccaggtcaaatttcggggcctttagaatcttcactttgcggaca 11515 Query: 349 tacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacc 408 |||||||||| || || ||||| || ||||| |||||||| || ||||| ||||| || Sbjct: 11516 aacacattctgaagggggaaaatactggatgtcgccttctcaatttccttcccaataact 11575 Query: 409 tcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccata 468 ||||| || || |||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct: 11576 tcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcctggttggccatg 11635 Query: 469 atctcaaccatcttncggcgaatctg 494 || ||||||||||| || |||||||| Sbjct: 11636 atttcaaccatcttgcgacgaatctg 11661
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 141 bits (71), Expect = 3e-30 Identities = 172/206 (83%) Strand = Plus / Minus Query: 289 acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggaca 348 |||||||| | |||||| | ||||| ||||| || || || ||||| || ||||||||| Sbjct: 5244277 acctccatgagcttccccaggtcaaatttcggggcctttagaatcttcactttgcggaca 5244218 Query: 349 tacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacc 408 |||||||||| || || ||||| || ||||| |||||||| || ||||| ||||| || Sbjct: 5244217 aacacattctgaagggggaaaatactggatgtcgccttctcaatttccttcccaataact 5244158 Query: 409 tcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttggccata 468 ||||| || || |||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct: 5244157 tcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcctggttggccatg 5244098 Query: 469 atctcaaccatcttncggcgaatctg 494 || ||||||||||| || |||||||| Sbjct: 5244097 atttcaaccatcttgcgacgaatctg 5244072
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 111 bits (56), Expect = 2e-21 Identities = 139/167 (83%) Strand = Plus / Plus Query: 328 aggatcttaaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttc 387 |||||||| || ||||| ||| |||||||||| || || || ||||||||||| |||||| Sbjct: 12315337 aggatcttgactttgcgcacaaacacattctgaagcgggaagatgcttgatgtggccttc 12315396 Query: 388 tcgatctccttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacag 447 ||||| ||||| ||||| |||||||| || |||||||| |||||||| || | |||||| Sbjct: 12315397 tcgatttccttcccaatcacctcaggaatgaattttgacaccagctccttgagatcacag 12315456 Query: 448 gttgaagcctggttggccataatctcaaccatcttncggcgaatctg 494 | ||| |||||||| |||| ||||| |||||||| || || ||||| Sbjct: 12315457 gatgatgcctggttcaccatgatctccaccatcttgcgacggatctg 12315503
>dbj|AK071037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079A13, full insert sequence Length = 1118 Score = 111 bits (56), Expect = 2e-21 Identities = 148/179 (82%) Strand = Plus / Minus Query: 328 aggatcttaaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttc 387 |||||||| || ||||| ||| |||||||||| || || || ||||||||||| |||||| Sbjct: 756 aggatcttgactttgcgcacaaacacattctgaagcgggaagatgcttgatgtggccttc 697 Query: 388 tcgatctccttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacag 447 ||||| ||||| ||||| |||||||| || |||||||| |||||||| || | |||||| Sbjct: 696 tcgatttccttcccaatcacctcaggaatgaattttgacaccagctccttgagatcacag 637 Query: 448 gttgaagcctggttggccataatctcaaccatcttncggcgaatctgtctgatctggct 506 | ||| |||||||| |||| |||| |||||||| || || ||||||| |||||||| Sbjct: 636 gatgatgcctggttcaccatggtctccaccatcttgcgacggatctgtcgaatctggct 578
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 111 bits (56), Expect = 2e-21 Identities = 139/167 (83%) Strand = Plus / Plus Query: 328 aggatcttaaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttc 387 |||||||| || ||||| ||| |||||||||| || || || ||||||||||| |||||| Sbjct: 12269707 aggatcttgactttgcgcacaaacacattctgaagcgggaagatgcttgatgtggccttc 12269766 Query: 388 tcgatctccttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacag 447 ||||| ||||| ||||| |||||||| || |||||||| |||||||| || | |||||| Sbjct: 12269767 tcgatttccttcccaatcacctcaggaatgaattttgacaccagctccttgagatcacag 12269826 Query: 448 gttgaagcctggttggccataatctcaaccatcttncggcgaatctg 494 | ||| |||||||| |||| ||||| |||||||| || || ||||| Sbjct: 12269827 gatgatgcctggttcaccatgatctccaccatcttgcgacggatctg 12269873
>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163702 Score = 111 bits (56), Expect = 2e-21 Identities = 139/167 (83%) Strand = Plus / Plus Query: 328 aggatcttaaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttc 387 |||||||| || ||||| ||| |||||||||| || || || ||||||||||| |||||| Sbjct: 29702 aggatcttgactttgcgcacaaacacattctgaagcgggaagatgcttgatgtggccttc 29761 Query: 388 tcgatctccttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacag 447 ||||| ||||| ||||| |||||||| || |||||||| |||||||| || | |||||| Sbjct: 29762 tcgatttccttcccaatcacctcaggaatgaattttgacaccagctccttgagatcacag 29821 Query: 448 gttgaagcctggttggccataatctcaaccatcttncggcgaatctg 494 | ||| |||||||| |||| ||||| |||||||| || || ||||| Sbjct: 29822 gatgatgcctggttcaccatgatctccaccatcttgcgacggatctg 29868
>gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence Length = 1229 Score = 107 bits (54), Expect = 4e-20 Identities = 179/221 (80%) Strand = Plus / Plus Query: 274 ttgtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatc 333 |||||||| ||||| ||||||||||||||||| | ||||||||| || || || || ||| Sbjct: 313 ttgtagtcgccatgaacctccatcaacttcccgagatcaaacttgggggccttgagtatc 372 Query: 334 ttaaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatc 393 || |||||||||| | || || || || || || ||||| || || | |||||| ||| Sbjct: 373 ttcaccttgcggatgaagacgttttgaagtgggaagatgctggaggtagacttctcaatc 432 Query: 394 tccttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacaggttgaa 453 || |||||||| || || || || || || ||||| || ||||| | |||||| || ||| Sbjct: 433 tctttgccaataacttccggaatgaacttagaaacaagttctttaaggtcacatgtagaa 492 Query: 454 gcctggttggccataatctcaaccatcttncggcgaatctg 494 ||||||||| |||||||||||||||||| ||||||||||| Sbjct: 493 gcctggttgatcataatctcaaccatcttgcggcgaatctg 533
>emb|AJ515028.1|CAR515028 Cicer arietinum mRNA for ribosomal protein S3a (rs3a gene) Length = 1026 Score = 103 bits (52), Expect = 6e-19 Identities = 186/231 (80%) Strand = Plus / Minus Query: 276 gtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctt 335 |||||||||||| |||||||||| || |||| ||||||||| |||| ||| | |||||| Sbjct: 755 gtagtcaccatgaacctccatcagttttccaagatcaaacttgggagatttcaagatctt 696 Query: 336 aaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctc 395 ||| ||||| | | | || ||||| ||||| ||||||| ||||| |||||||| ||||| Sbjct: 695 aactttgcgaataaaaacgttctgcagagggtaaatgctagatgtagccttctcaatctc 636 Query: 396 cttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacaggttgaagc 455 ||| ||||| | |||||| ||||| || ||| ||||||||||| ||||| | || || Sbjct: 635 ctttccaatcatctcagggataaacttgcgaacaagctctttcaaatcacacgatgttgc 576 Query: 456 ctggttggccataatctcaaccatcttncggcgaatctgtctgatctggct 506 ||||| |||| ||||| |||||| | ||| ||||||||||||||||| Sbjct: 575 ttggttaaccatgatctccctcatcttcctgcggatctgtctgatctggct 525
>gb|AF542188.1| Triticum aestivum cyc07 mRNA, complete cds Length = 820 Score = 101 bits (51), Expect = 2e-18 Identities = 141/173 (81%) Strand = Plus / Minus Query: 331 atcttaaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcg 390 ||||| |||||||| || ||||| ||||| || || || |||| ||| || || ||||| Sbjct: 716 atcttcaccttgcgnacgtacacgttctgnaggggnaagatgcctgaggtggcnttctca 657 Query: 391 atctccttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacaggtt 450 |||||||| ||||| |||||||| || || || || ||||| || ||||||||| || Sbjct: 656 atctcctttccaatcacctcagggatgaacttgttcacaagctcntttaagtcacagctt 597 Query: 451 gaagcctggttggccataatctcaaccatcttncggcgaatctgtctgatctg 503 | ||| |||||| |||| |||||||||||||| ||||| |||||||||||||| Sbjct: 596 gcagcttggttgaccatgatctcaaccatcttgcggcggatctgtctgatctg 544
>gb|AY109383.1| Zea mays CL7224_1 mRNA sequence Length = 1236 Score = 99.6 bits (50), Expect = 9e-18 Identities = 224/282 (79%), Gaps = 3/282 (1%) Strand = Plus / Plus Query: 223 gcctcatctgcctcagctggcctctccaacttcacaccgacatcctccttgttgtagtca 282 ||||||||| |||| | |||||||| | ||||||||| |||||||| |||| |||| Sbjct: 367 gcctcatctccctcgacaggcctctcaagcttcacaccaacatcctctttgt---agtcg 423 Query: 283 ccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttg 342 ||||| |||||||| | |||||||| ||| ||||| || | || || ||||| |||||| Sbjct: 424 ccatgaacctccatgagcttcccaagatcgaacttggggnccttgagtatcttcaccttg 483 Query: 343 cggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgcca 402 |||| | || || || || || || ||||| || || | |||||| |||||||| ||| Sbjct: 484 cggatgaagacgttttgaagtgggaagatgctggaggtagacttctcaatctccttacca 543 Query: 403 atgacctcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttg 462 || || || || || || || ||||| || ||||||| |||||| || |||||||||||| Sbjct: 544 ataacttctggaatgaacttcgaaacaagttctttcaggtcacatgtagaagcctggttg 603 Query: 463 gccataatctcaaccatcttncggcgaatctgtctgatctgg 504 |||||||||||||||||| ||||| ||||| | ||||||| Sbjct: 604 atcataatctcaaccatcttacggcggatctgacggatctgg 645
>gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRNA, partial cds Length = 382 Score = 97.6 bits (49), Expect = 3e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 274 ttgtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatc 333 |||||||||||||| |||||||| | |||||| | ||| ||||| || || || | |||| Sbjct: 171 ttgtagtcaccatgcacctccatgagcttccccagatcgaacttgggtgccttcaagatc 112 Query: 334 ttaaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatc 393 || ||||||||||||||||| |||||||| || || ||||| | ||| |||||||||||| Sbjct: 111 ttcaccttgcggacatacacgttctggagcgggaagatgctcggtgtcgccttctcgatc 52 Query: 394 tcctt 398 ||||| Sbjct: 51 tcctt 47
>gb|AY849388.1| Vitis vinifera cultivar Riesling cyc07 mRNA, partial cds Length = 879 Score = 93.7 bits (47), Expect = 5e-16 Identities = 148/181 (81%), Gaps = 3/181 (1%) Strand = Plus / Minus Query: 233 cctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacct 292 |||||||||||||||||| ||||||||| ||||| || || |||||||||| |||| Sbjct: 673 cctcagctggcctctccatcttcacaccaacatcttcagagt---agtcaccatgaacct 617 Query: 293 ccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggacataca 352 |||||||||| |||| |||||| || |||||||| | |||||| || || || | | | Sbjct: 616 ccatcaactttccaagatcaaatttgggagctttcaagatcttgacttttcgaatgaaga 557 Query: 353 cattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgacctcag 412 ||||||| |||||| | |||||||| ||||||||||| ||||| ||||||| | ||||| Sbjct: 556 cattctgtagaggatagatgcttgaagttgccttctcaatctctctgccaatcatctcag 497 Query: 413 g 413 | Sbjct: 496 g 496
>gb|BT016390.1| Zea mays clone Contig223 mRNA sequence Length = 1104 Score = 89.7 bits (45), Expect = 8e-15 Identities = 223/282 (79%), Gaps = 3/282 (1%) Strand = Plus / Minus Query: 223 gcctcatctgcctcagctggcctctccaacttcacaccgacatcctccttgttgtagtca 282 ||||||||| |||| | |||||||| | ||||||||| |||||||| |||| |||| Sbjct: 828 gcctcatctccctcgacaggcctctcaagcttcacaccaacatcctctttgt---agtcg 772 Query: 283 ccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttg 342 ||||| |||||||| | ||||||| ||| ||||| || || || || ||||| |||||| Sbjct: 771 ccatgaacctccatgagtttcccaagatcgaacttgggggccttgagtatcttcaccttg 712 Query: 343 cggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgcca 402 |||| | || || || || || || ||||| || || | |||||| ||||| || ||| Sbjct: 711 cggatgaagacgttttgaagtgggaagatgctggaggtagacttctcaatctctttacca 652 Query: 403 atgacctcaggtataaattttgaaaccagctctttcaagtcacaggttgaagcctggttg 462 || || || || || || || ||||| || ||||||| |||||| || |||||||||||| Sbjct: 651 ataacttctggaatgaacttcgaaacaagttctttcaggtcacatgtagaagcctggttg 592 Query: 463 gccataatctcaaccatcttncggcgaatctgtctgatctgg 504 |||||||||||||||||| ||||| ||||| | ||||||| Sbjct: 591 atcataatctcaaccatctttcggcggatctgacggatctgg 550
>dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds Length = 1050 Score = 87.7 bits (44), Expect = 3e-14 Identities = 101/120 (84%) Strand = Plus / Minus Query: 276 gtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctt 335 |||||||||||| ||||||||||| || ||||||||||| || || ||||| |||||||| Sbjct: 726 gtagtcaccatgaacctccatcaatttgccaatatcaaatttaggtgctttcaggatctt 667 Query: 336 aaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctc 395 || ||||||| | | ||||| |||||||| || ||||| || ||||| ||||| ||||| Sbjct: 666 gactttgcggataaagacattttggagagggaagatgctcgaagttgctttctcaatctc 607 Score = 54.0 bits (27), Expect = 5e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 465 cataatctcaaccatcttncggcgaatctgtctgatctggct 506 |||||| ||||||||||| ||||||||||| | ||||||||| Sbjct: 537 cataatttcaaccatcttacggcgaatctgccggatctggct 496
>gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal protein S3 mRNA, partial cds Length = 462 Score = 77.8 bits (39), Expect = 3e-11 Identities = 111/135 (82%) Strand = Plus / Minus Query: 274 ttgtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatc 333 ||||| || ||||| |||||||| | || |||| ||||||||| ||||| || |||||| Sbjct: 137 ttgtaatctccatgaacctccatgagttttccaagatcaaactttggagccttgaggatc 78 Query: 334 ttaaccttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatc 393 ||||||||||||| | |||||||| || || | ||||| | ||| |||||||||||| Sbjct: 77 ttaaccttgcggatgaatacattctgcagggggtagatgctcgttgtcgccttctcgatc 18 Query: 394 tccttgccaatgacc 408 |||||||| |||||| Sbjct: 17 tccttgcctatgacc 3
>gb|AC146852.15| Medicago truncatula clone mth2-58k21, complete sequence Length = 145314 Score = 71.9 bits (36), Expect = 2e-09 Identities = 108/132 (81%) Strand = Plus / Minus Query: 288 tacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggac 347 |||||||||||||||||||| |||||| || |||||||| ||||||||||| || || | Sbjct: 49266 tacctccatcaacttcccaagatcaaatttgggagctttcaggatcttaactttacgaat 49207 Query: 348 atacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgac 407 | |||||||| || || ||||||| || || |||||||| ||||| || ||||| | Sbjct: 49206 gaaaacattctgcagtgggtaaatgctggacgtagccttctcaatctcttttccaatcat 49147 Query: 408 ctcaggtataaa 419 |||||| ||||| Sbjct: 49146 ctcagggataaa 49135
>gb|AC135320.6| Medicago truncatula clone mth2-28e9, complete sequence Length = 108644 Score = 71.9 bits (36), Expect = 2e-09 Identities = 108/132 (81%) Strand = Plus / Plus Query: 288 tacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggac 347 |||||||||||||||||||| |||||| || |||||||| ||||||||||| || || | Sbjct: 41645 tacctccatcaacttcccaagatcaaatttgggagctttcaggatcttaactttacgaat 41704 Query: 348 atacacattctggagaggaaaaatgcttgatgttgccttctcgatctccttgccaatgac 407 | |||||||| || || ||||||| || || |||||||| ||||| || ||||| | Sbjct: 41705 gaaaacattctgcagtgggtaaatgctggacgtagccttctcaatctcttttccaatcat 41764 Query: 408 ctcaggtataaa 419 |||||| ||||| Sbjct: 41765 ctcagggataaa 41776
>gb|DQ164221.1| Nicotiana tabacum cyc07 mRNA, complete cds Length = 786 Score = 71.9 bits (36), Expect = 2e-09 Identities = 138/172 (80%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||||| ||| ||||||||||| || || || || |||||||| Sbjct: 704 tagtcaccatgaacctccatcagcttgccaatatcaaattttggggccttgaggatcttc 645 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 || ||||| | ||| ||||| || || || || |||||||| || || ||||| ||||| Sbjct: 644 actttgcgaatataaacattttgcagtgggaagatgcttgaagtcgctttctcaatctct 585 Query: 397 ttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacagg 448 | ||||| |||||| || ||||||| |||| ||| ||||||||||||| Sbjct: 584 ctaccaattgactcagggatgaattttgcgaccaactccttcaagtcacagg 533
>gb|DQ268835.1| Solanum tuberosum clone 115A11 cyc07-like protein mRNA, complete cds Length = 1020 Score = 69.9 bits (35), Expect = 8e-09 Identities = 98/119 (82%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||| ||||| |||||||||||||| |||| ||| || || || || || |||||||| Sbjct: 747 tagtcgccatgcacctccatcaacttgccaagatcgaatttaggggccttgaggatcttg 688 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctc 395 || ||||| | ||| ||||| ||||| |||||||||||||| || || ||||| ||||| Sbjct: 687 actttgcgaatataaacattttggagtggaaaaatgcttgaagtagctttctcaatctc 629
>gb|DQ252490.1| Solanum tuberosum clone 059D09 cyc07-like mRNA, complete cds Length = 996 Score = 69.9 bits (35), Expect = 8e-09 Identities = 98/119 (82%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||| ||||| |||||||||||||| |||| ||| || || || || || |||||||| Sbjct: 725 tagtcgccatgcacctccatcaacttgccaagatcgaatttaggggccttgaggatcttg 666 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctc 395 || ||||| | ||| ||||| ||||| |||||||||||||| || || ||||| ||||| Sbjct: 665 actttgcgaatataaacattttggagtggaaaaatgcttgaagtagctttctcaatctc 607
>gb|AY290725.1| Triticum aestivum ribosomal protein S3a-like mRNA, partial sequence Length = 885 Score = 63.9 bits (32), Expect = 5e-07 Identities = 63/74 (85%) Strand = Plus / Minus Query: 430 agctctttcaagtcacaggttgaagcctggttggccataatctcaaccatcttncggcga 489 ||||| || ||||||||| ||| ||| |||||| ||| |||||| ||||||| ||||| Sbjct: 619 agctcctttaagtcacagcttgcagcttggttgaccaatatctcanccatcttgcggcgg 560 Query: 490 atctgtctgatctg 503 |||||||||||||| Sbjct: 559 atctgtctgatctg 546
>gb|DQ445133.1| Striga asiatica isolate St513 S phase protein mRNA, partial cds Length = 571 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 310 tcaaacttcggagctttaaggatcttaaccttgcggacatacacattctggagaggaaaa 369 ||||| || |||||||| | |||||| ||||| | || |||||||||||| ||||| | Sbjct: 512 tcaaatttgggagctttcaagatcttgaccttcctgatatacacattctgaagagggtag 453 Query: 370 atgcttgatgttgccttctcgatctccttgccaat 404 |||||| ||||||||||||||||| |||||||| Sbjct: 452 atgctttgggttgccttctcgatctctttgccaat 418
>gb|DQ268856.1| Solanum tuberosum clone 174A02 cyc07-like protein mRNA, complete cds Length = 1045 Score = 56.0 bits (28), Expect = 1e-04 Identities = 136/172 (79%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||||| ||| |||| ||||| || || || || |||||||| Sbjct: 777 tagtcaccatgaacctccatcagcttgccaaggtcaaatttaggggccttgaggatcttg 718 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 ||||| || | ||| ||||| || || || || ||||| || ||||| || || |||||| Sbjct: 717 acctttcgaatatagacattttgtagggggaagatgctggaagttgctttttcaatctcc 658 Query: 397 ttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacagg 448 ||||||| ||||| || ||||||| ||| | ||| ||||||||||||| Sbjct: 657 ctgccaattgattcagggatgaattttgcaactaactccttcaagtcacagg 606
>gb|DQ268849.1| Solanum tuberosum clone 155F06 cyc07-like protein mRNA, complete cds Length = 1038 Score = 56.0 bits (28), Expect = 1e-04 Identities = 136/172 (79%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||||| ||| |||| ||||| || || || || |||||||| Sbjct: 761 tagtcaccatgaacctccatcagcttgccaaggtcaaatttaggggccttgaggatcttg 702 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 ||||| || | ||| ||||| || || || || ||||| || ||||| || || |||||| Sbjct: 701 acctttcgaatatagacattttgtagggggaagatgctggaagttgctttttcaatctcc 642 Query: 397 ttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacagg 448 ||||||| ||||| || ||||||| ||| | ||| ||||||||||||| Sbjct: 641 ctgccaattgattcagggatgaattttgcaactaactccttcaagtcacagg 590
>gb|DQ252485.1| Solanum tuberosum clone 048H05 cyc07-like mRNA, complete cds Length = 998 Score = 56.0 bits (28), Expect = 1e-04 Identities = 136/172 (79%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||||| ||| |||| ||||| || || || || |||||||| Sbjct: 737 tagtcaccatgaacctccatcagcttgccaaggtcaaatttaggggccttgaggatcttg 678 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 ||||| || | ||| ||||| || || || || ||||| || ||||| || || |||||| Sbjct: 677 acctttcgaatatagacattttgtagggggaagatgctggaagttgctttttcaatctcc 618 Query: 397 ttgccaatgacctcaggtataaattttgaaaccagctctttcaagtcacagg 448 ||||||| ||||| || ||||||| ||| | ||| ||||||||||||| Sbjct: 617 ctgccaattgattcagggatgaattttgcaactaactccttcaagtcacagg 566
>ref|XM_677047.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8870.2), mRNA Length = 771 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 309 atcaaacttcggagctttaaggatcttaaccttgcgga 346 |||||||||||||| |||||||| ||| |||||||||| Sbjct: 672 atcaaacttcggagatttaaggagcttgaccttgcgga 635
>gb|AF093109.1| Tortula ruralis ribosomal protein S3 (rps3) mRNA, complete cds Length = 899 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 266 cctccttgttgtagtcaccatgtacctccatcaacttc 303 |||||| ||||||||| ||||| ||||||||||||||| Sbjct: 730 cctcctcgttgtagtctccatgaacctccatcaacttc 693
>dbj|D01058.1|CTRCYC07 Catharanthus roseus cyc07 mRNA, complete cds Length = 1100 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 368 aaatgcttgatgttgccttctcgatctccttgccaat 404 |||||||||||||||| ||||| |||||| ||||||| Sbjct: 684 aaatgcttgatgttgctttctcaatctccctgccaat 648
>gb|BT012853.1| Lycopersicon esculentum clone 113933F, mRNA sequence Length = 1053 Score = 48.1 bits (24), Expect = 0.029 Identities = 93/116 (80%) Strand = Plus / Minus Query: 280 tcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaacc 339 ||||| || |||||||||||| |||||| ||||| || ||||| || | |||||| ||| Sbjct: 772 tcaccgtgaacctccatcaacctcccaaggtcaaatttaggagccttcaagatcttgacc 713 Query: 340 ttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctc 395 ||||| | | |||||||| | ||| | |||||||| ||||||||||| ||||| Sbjct: 712 ttgcgaatgaatacattctgcaaagggtagatgcttgaagttgccttctcaatctc 657
>gb|DQ268842.1| Solanum tuberosum clone 135C12 40S ribosomal protein S3a-like protein mRNA, complete cds Length = 1059 Score = 48.1 bits (24), Expect = 0.029 Identities = 93/116 (80%) Strand = Plus / Minus Query: 280 tcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaacc 339 ||||| || |||||||||||| |||||| || || || ||||| || | |||||| ||| Sbjct: 732 tcaccgtgaacctccatcaacctcccaaggtcgaatttaggagccttcaagatcttgacc 673 Query: 340 ttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctc 395 ||||| | |||||||||| | ||| | |||||||| ||||||||||| ||||| Sbjct: 672 ttgcgaatgaacacattctgcaaagggtagatgcttgaagttgccttctcaatctc 617
>ref|NM_119633.2| Arabidopsis thaliana structural constituent of ribosome AT4G34670 mRNA, complete cds Length = 1093 Score = 42.1 bits (21), Expect = 1.8 Identities = 81/101 (80%) Strand = Plus / Minus Query: 235 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 294 ||||||||||| || | ||||||||| |||||||| |||| || ||||| |||||| Sbjct: 824 tcagctggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctcc 765 Query: 295 atcaacttcccaatatcaaacttcggagctttaaggatctt 335 || | ||| |||| |||||||| ||||| || |||||||| Sbjct: 764 atgagctttccaaggtcaaacttgggagcctttaggatctt 724
>ref|XM_420443.1| PREDICTED: Gallus gallus similar to 40S ribosomal protein S3a (V-fos transformation effector protein) (LOC422477), mRNA Length = 1423 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 331 atcttaaccttgcggacatacacat 355 |||||||||||||||||||| |||| Sbjct: 1313 atcttaaccttgcggacatagacat 1289
>gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, complete sequence Length = 194297 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 catctctattcagctggagct 207 ||||||||||||||||||||| Sbjct: 49278 catctctattcagctggagct 49258
>gb|AC021427.10| Homo sapiens chromosome 11, clone RP11-399N15, complete sequence Length = 174147 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 catctctattcagctggagct 207 ||||||||||||||||||||| Sbjct: 111330 catctctattcagctggagct 111310
>gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ribosomal protein (At4g34670; T4L20.250) mRNA, complete cds Length = 1094 Score = 42.1 bits (21), Expect = 1.8 Identities = 81/101 (80%) Strand = Plus / Minus Query: 235 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 294 ||||||||||| || | ||||||||| |||||||| |||| || ||||| |||||| Sbjct: 824 tcagctggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctcc 765 Query: 295 atcaacttcccaatatcaaacttcggagctttaaggatctt 335 || | ||| |||| |||||||| ||||| || |||||||| Sbjct: 764 atgagctttccaaggtcaaacttgggagcctttaggatctt 724
>emb|CR338738.2| Gallus gallus finished cDNA, clone ChEST52d12 Length = 758 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 331 atcttaaccttgcggacatacacat 355 |||||||||||||||||||| |||| Sbjct: 223 atcttaaccttgcggacatagacat 247
>gb|AC158670.5| Mus musculus 6 BAC RP23-82N21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 227520 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 tctctattcagctggagctgc 209 ||||||||||||||||||||| Sbjct: 96534 tctctattcagctggagctgc 96554
>emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 836 Score = 42.1 bits (21), Expect = 1.8 Identities = 81/101 (80%) Strand = Plus / Minus Query: 235 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 294 ||||||||||| || | ||||||||| |||||||| |||| || ||||| |||||| Sbjct: 653 tcagctggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctcc 594 Query: 295 atcaacttcccaatatcaaacttcggagctttaaggatctt 335 || | ||| |||| |||||||| ||||| || |||||||| Sbjct: 593 atgagctttccaaggtcaaacttgggagcctttaggatctt 553
>emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein Length = 906 Score = 42.1 bits (21), Expect = 1.8 Identities = 81/101 (80%) Strand = Plus / Minus Query: 235 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 294 ||||||||||| || | ||||||||| |||||||| |||| || ||||| |||||| Sbjct: 746 tcagctggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctcc 687 Query: 295 atcaacttcccaatatcaaacttcggagctttaaggatctt 335 || | ||| |||| |||||||| ||||| || |||||||| Sbjct: 686 atgagctttccaaggtcaaacttgggagcctttaggatctt 646
>emb|CR352309.9| Zebrafish DNA sequence from clone DKEYP-72H1 in linkage group 20, complete sequence Length = 142300 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 346 acatacacattctggagaggaaaaa 370 |||||||||||||||||||| |||| Sbjct: 80613 acatacacattctggagaggcaaaa 80589
>gb|AF042107.1|AF042107 Eimeria tenella ribosomal protein S3a mRNA, complete cds Length = 858 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 331 atcttaaccttgcggacatacacat 355 |||||||||||||||||||| |||| Sbjct: 656 atcttaaccttgcggacatagacat 632
>emb|CR847844.6| Zebrafish DNA sequence from clone DKEY-181C13 in linkage group 10, complete sequence Length = 121598 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 gtataaattttgaaaccagct 433 ||||||||||||||||||||| Sbjct: 100931 gtataaattttgaaaccagct 100951
>gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, complete sequence Length = 190616 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atcagctccttgatttgctc 71 |||||||||||||||||||| Sbjct: 150593 atcagctccttgatttgctc 150612
>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence Length = 245594 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 aacccctgcctcatctgcctcagc 239 |||||||||||| ||||||||||| Sbjct: 12940 aacccctgcctcctctgcctcagc 12963
>gb|DQ214673.1| Taeniopygia guttata clone 0061P0008B04 ribosomal protein S3a-like mRNA, complete sequence Length = 922 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 gccttctcgatctccttgccaatg 405 ||||||||||| |||||||||||| Sbjct: 668 gccttctcgatgtccttgccaatg 645
>gb|DQ214672.1| Taeniopygia guttata clone 0058P0017B06 ribosomal protein S3a-like mRNA, complete sequence Length = 906 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 gccttctcgatctccttgccaatg 405 ||||||||||| |||||||||||| Sbjct: 650 gccttctcgatgtccttgccaatg 627
>gb|DQ214670.1| Taeniopygia guttata clone 0058P0030H07 ribosomal protein S3a-like mRNA, complete sequence Length = 879 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 gccttctcgatctccttgccaatg 405 ||||||||||| |||||||||||| Sbjct: 623 gccttctcgatgtccttgccaatg 600
>gb|DQ214669.1| Taeniopygia guttata clone 0061P0016E10 ribosomal protein S3a-like mRNA, complete sequence Length = 547 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 gccttctcgatctccttgccaatg 405 ||||||||||| |||||||||||| Sbjct: 295 gccttctcgatgtccttgccaatg 272
>gb|DQ214668.1| Taeniopygia guttata clone 0063P0025A12 ribosomal protein S3a-like mRNA, complete sequence Length = 630 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 gccttctcgatctccttgccaatg 405 ||||||||||| |||||||||||| Sbjct: 374 gccttctcgatgtccttgccaatg 351
>gb|AC084780.10| Mus musculus chromosome 5, clone RP23-212N20, complete sequence Length = 234357 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aattttgaaaccagctcttt 437 |||||||||||||||||||| Sbjct: 134320 aattttgaaaccagctcttt 134339
>gb|AC149774.2| Bos taurus BAC CH240-10G15 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 186916 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aagcatagcacacacatctt 168 |||||||||||||||||||| Sbjct: 74467 aagcatagcacacacatctt 74486
>gb|AC134908.5| Mus musculus BAC clone RP23-377L13 from chromosome 17, complete sequence Length = 189458 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aacccctgcctcatctgcctcagc 239 |||||||||||| ||||||||||| Sbjct: 60705 aacccctgcctcctctgcctcagc 60682
>gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome 5, complete sequence Length = 166292 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 aacccctgcctcatctgcctcagc 239 |||||||||||| ||||||||||| Sbjct: 119690 aacccctgcctcctctgcctcagc 119713
>gb|AC122915.2| Mus musculus BAC clone RP23-27G7 from 5, complete sequence Length = 220145 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aattttgaaaccagctcttt 437 |||||||||||||||||||| Sbjct: 182421 aattttgaaaccagctcttt 182440
>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence Length = 151183 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gctggagctgcaacctcaac 218 |||||||||||||||||||| Sbjct: 93916 gctggagctgcaacctcaac 93935
>gb|AC079231.6| Homo sapiens BAC clone RP11-348A21 from 7, complete sequence Length = 87047 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 atcaagacactgaacatctctatt 196 ||||||||||||||||| |||||| Sbjct: 49940 atcaagacactgaacatttctatt 49963
>emb|AL353136.21| Human DNA sequence from clone RP11-133K18 on chromosome X Contains a pyruvate kinase muscle (PKM2) pseudogene and the gene for ectodysplasin A2 isoform receptor (XEDAR), complete sequence Length = 192505 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 agaggaaaaatgcttgatgt 380 |||||||||||||||||||| Sbjct: 166812 agaggaaaaatgcttgatgt 166831
>emb|AL157831.29| Human DNA sequence from clone RP11-108B14 on chromosome 10 Contains a ribosomal protein L29 (RPL29)(HIP,HUMRPL29) pseudogene, a CGI-45 protein (CGI-45) pseudogene, a novel pseudogene, a pseudogene similar to part of PSME2 (PA28B,REGbeta,PA28beta) (proteasome (prosome, macropain) activator subunit 2 (PA28 beta)) and a CpG island, complete sequence Length = 176577 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ctgcagctgcaacctcaacc 36 |||||||||||||||||||| Sbjct: 162510 ctgcagctgcaacctcaacc 162491
>emb|AL049844.7|HSJ468K18 Human DNA sequence from clone RP3-468K18 on chromosome 6q24.1-24.3 Contains part of the gene for a novel protein (contains KIAA0680), the gene for a novel protein (similar to nucleolin) (contains FLJ14909), the gene for a novel protein similar to a hypothetical mouse protein, and part of the PLAGL1 gene for pleiomorphic adenoma gene-like 1 (PLAG-like 1, LOT1, ZAC, ZAC tumor suppressor). Contains a CpG island, complete sequence Length = 137387 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aatagcaaaagcaggcatca 113 |||||||||||||||||||| Sbjct: 110514 aatagcaaaagcaggcatca 110495
>emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; segment 3/3 Length = 302938 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gataatagcaaaagcaggca 110 |||||||||||||||||||| Sbjct: 98811 gataatagcaaaagcaggca 98830
>emb|BX957274.8| Zebrafish DNA sequence from clone DKEY-155F10 in linkage group 9, complete sequence Length = 216817 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aatgcttgatgttgccttct 388 |||||||||||||||||||| Sbjct: 6847 aatgcttgatgttgccttct 6866
>emb|AL670472.7| Mouse DNA sequence from clone RP23-26M1 on chromosome 11 Contains a ribosomal protein S6 (Rps6) pseudogene, the gene for ileal fatty acid binding protein 6 (gastrotropin) (Fabp6), two novel genes, the gene for a novel protein (1810033K05Rik), a mitochondrial ribosomal protein 63 (Mrp63) pseudogene, the gene for step II splicing factor SLU7 (Slu7-pending), the Pttg1 gene for pituitary tumor-transforming 1 and a CpG island, complete sequence Length = 232609 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 cccctgcctcatctgcctca 237 |||||||||||||||||||| Sbjct: 131772 cccctgcctcatctgcctca 131791
>gb|AC010110.7| Drosophila melanogaster 3L BAC RP98-9N2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172372 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 acttggaaagcatagcacacacat 165 ||||||||| |||||||||||||| Sbjct: 52191 acttggaaaacatagcacacacat 52214
>gb|AC091529.1|AC091529 Homo sapiens chromosome 17 clone 1005, complete sequence Length = 157463 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 atagcaaaagcaggcatcaa 114 |||||||||||||||||||| Sbjct: 40063 atagcaaaagcaggcatcaa 40082
>gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355N15 map 15q21.3, complete sequence Length = 173386 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 catctgcctcagctggcctc 246 |||||||||||||||||||| Sbjct: 92125 catctgcctcagctggcctc 92144
>gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, complete sequence Length = 96843 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 atgacctcaggtataaattt 422 |||||||||||||||||||| Sbjct: 84895 atgacctcaggtataaattt 84876
>gb|AC124248.6| Homo sapiens chromosome 15, clone CTD-3094K11, complete sequence Length = 142201 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 218 cccctgcctcatctgcctcagctggcct 245 |||||||||||||| ||||| ||||||| Sbjct: 86067 cccctgcctcatcttcctcacctggcct 86040
>gb|AC129916.6| Homo sapiens chromosome 17, clone RP11-2L19, complete sequence Length = 167265 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 atagcaaaagcaggcatcaa 114 |||||||||||||||||||| Sbjct: 42788 atagcaaaagcaggcatcaa 42769
>dbj|AK192629.1| Mus musculus cDNA, clone:Y1G0109H10, strand:unspecified Length = 290 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tttgaaaccagctctttcaa 440 |||||||||||||||||||| Sbjct: 74 tttgaaaccagctctttcaa 55
>emb|AL929090.4| Zebrafish DNA sequence from clone CH211-14A14, complete sequence Length = 178077 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 aatgcttgatgttgccttct 388 |||||||||||||||||||| Sbjct: 79452 aatgcttgatgttgccttct 79433
>gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.58_E_17, complete sequence Length = 286758 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 atagcaaaagcaggcatcaa 114 |||||||||||||||||||| Sbjct: 2983 atagcaaaagcaggcatcaa 3002
>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome Length = 927303 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gataatagcaaaagcaggca 110 |||||||||||||||||||| Sbjct: 723229 gataatagcaaaagcaggca 723248
>dbj|AK061009.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A10, full insert sequence Length = 1612 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 ccttctcgatctccttgcca 402 |||||||||||||||||||| Sbjct: 1188 ccttctcgatctccttgcca 1169
>gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 of 83 of the complete sequence Length = 301691 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 acttggaaagcatagcacacacat 165 ||||||||| |||||||||||||| Sbjct: 239128 acttggaaaacatagcacacacat 239151
>gb|AC005800.1|AC005800 Homo sapiens Chromosome 15q26.1 PAC clone pDJ427d15, complete sequence Length = 100259 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 cccctgcctcatctgcctcagctggcct 245 |||||||||||||| ||||| ||||||| Sbjct: 10916 cccctgcctcatcttcctcacctggcct 10943
>gb|AC160645.2| Gallus gallus BAC clone CH261-21L11 from chromosome unknown, complete sequence Length = 223748 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 taatagcaaaagcaggcatc 112 |||||||||||||||||||| Sbjct: 111466 taatagcaaaagcaggcatc 111447
>gb|DQ241862.1| Solanum tuberosum clone 027B03 40S ribosomal protein S3a-like mRNA, complete cds Length = 1118 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 235 tcagctggcctctccaacttcacaccgacatc 266 |||||||||| |||||||||||||| ||||| Sbjct: 829 tcagctggccgatccaacttcacaccaacatc 798 Score = 40.1 bits (20), Expect = 6.9 Identities = 101/128 (78%) Strand = Plus / Minus Query: 277 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 336 ||||||||||| |||||||||| ||| || | ||||| || || || || |||||||| Sbjct: 790 tagtcaccatgaacctccatcagcttgcctaggtcaaatttaggggccttcaggatcttg 731 Query: 337 accttgcggacatacacattctggagaggaaaaatgcttgatgttgccttctcgatctcc 396 ||||| || | ||| ||||| || || || || ||||| || ||||| || || |||||| Sbjct: 730 acctttcgaatatagacattttgtagggggaagatgctggaagttgctttttcaatctcc 671 Query: 397 ttgccaat 404 ||||||| Sbjct: 670 ctgccaat 663
>gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA, complete cds Length = 982 Score = 40.1 bits (20), Expect = 6.9 Identities = 53/64 (82%) Strand = Plus / Minus Query: 283 ccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttg 342 ||||| ||||||||||| ||||| || |||||||| || || || | |||||| || ||| Sbjct: 767 ccatgaacctccatcaatttcccgatgtcaaacttgggtgccttcaagatcttgactttg 708 Query: 343 cgga 346 |||| Sbjct: 707 cgga 704 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,343,317 Number of Sequences: 3902068 Number of extensions: 5343317 Number of successful extensions: 98572 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 98217 Number of HSP's gapped (non-prelim): 351 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
