>KPK1_PHAVU (P15792) Protein kinase PVPK-1 (EC 2.7.11.1)|
          Length = 609

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = +2

Query: 257 GIIHYFPLP----KPSRTPSRASRRYD 325
           G+ H+ PLP    +PSR P RASR YD
Sbjct: 20  GVHHHDPLPSGTPQPSRPPLRASRNYD 46

>LEF9_NPVOP (O10319) Late expression factor 9|
          Length = 489

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 16  HQSSKEGGYSSLRYTIGDCVWATNFPANIFLAKLGENLY 132
           H S+ E   + +R     CV  TN P+N+FL KL  N +
Sbjct: 65  HISAGEHADALVRIIDATCVVVTNLPSNVFLKKLKTNKF 103

>TRPB2_METMA (Q8Q001) Tryptophan synthase beta chain 2 (EC 4.2.1.20)|
          Length = 442

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 274 KVVYDPLIFFAPSSGEVSCAGSSHTIACAVD 182
           K V+D  + FA + G V    SSH I CA+D
Sbjct: 374 KEVFDAAVQFARTEGIVPAPESSHAIRCAID 404

>PDE4A_HUMAN (P27815) cAMP-specific 3',5'-cyclic phosphodiesterase 4A (EC|
           3.1.4.17) (DPDE2) (PDE46)
          Length = 886

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
 Frame = +2

Query: 185 HGASNGVGAAGTTNLSARGGEKNKGIIHYFPLPKPSRTP--SRASRRYDLPLWAA----- 343
           HG   G G AG       GG   +      P P P R+P  S+AS    L   AA     
Sbjct: 91  HGTGTGSGGAG-------GGSSRRFEAENGPTPSPGRSPLDSQASPGLVLHAGAATSQRR 143

Query: 344 ----YSSDSDWSLSACLPFPLSRRALRTA 418
               Y SDSD+ +S   P  +SR +  T+
Sbjct: 144 ESFLYRSDSDYDMS---PKTMSRNSSVTS 169

>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 324  TCHYGQRTAATPTGLSRRACPFPCPDEPFARLAGS 428
            T +YG  TA TP      ACP   P+  F+R   S
Sbjct: 1596 TGYYGDATAGTPEDCQPCACPLTNPENMFSRTCES 1630

>TRPB2_METAC (Q8TL44) Tryptophan synthase beta chain 2 (EC 4.2.1.20)|
          Length = 442

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 268 VYDPLIFFAPSSGEVSCAGSSHTIACAVD 182
           V+D  + FA + G V    SSH I CA+D
Sbjct: 376 VFDAAVQFARTEGIVPAPESSHAIRCAID 404

>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 330  HYGQRTAATPTGLSRRACPFPCPDEPFARLAGS 428
            +YG  TA TP      ACP   P+  F+R   S
Sbjct: 1598 YYGDATAGTPEDCQPCACPLTNPENMFSRTCES 1630

>SSH3_RAT (Q5XIS1) Protein phosphatase Slingshot homolog 3 (EC 3.1.3.48) (EC|
           3.1.3.16) (SSH-3L)
          Length = 652

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 433 AADPASRAKGSSGQGKGQARRERPVGVAA 347
           AA  ASRA+   GQG+GQ + +R  G ++
Sbjct: 602 AALVASRARAFQGQGQGQGQEQRETGTSS 630

>CCD16_MOUSE (Q8R1N0) Coiled-coil domain-containing protein 16 (Ovus mutant|
           candidate gene 1 protein)
          Length = 363

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 282 RSHQEHRAELRGAMTCHYGQRTAATPTGLSRRACPFPCPDEPFAR 416
           + H+E  AEL+GA     G  T   P    RRA      D   A+
Sbjct: 73  KQHRERVAELKGAKGATQGPSTGTVPQATKRRATDVESQDAKKAK 117

>YG61_YEAST (P53339) Hypothetical protein YGR290W precursor|
          Length = 147

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 329 PLWAAYSSDSDWSLSACLP-FPLSRRA-LRTACW 424
           P WA    +S WS S  L  FP S+ + L+T+CW
Sbjct: 47  PNWAELVVNSKWSSSKALSFFPSSKSSVLKTSCW 80

>SASA_SYNY3 (Q55630) Adaptive-response sensory-kinase sasA (EC 2.7.13.3)|
          Length = 383

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 94  LENLLPTHSHQLYISEMSTHPLL 26
           L NLL  HSH L I ++S HP L
Sbjct: 38  LTNLLDGHSHDLQILQISKHPHL 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,577,064
Number of Sequences: 219361
Number of extensions: 1399602
Number of successful extensions: 3930
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3927
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)