>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  381 bits (192), Expect = e-103
 Identities = 215/223 (96%), Gaps = 1/223 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaaggagtctccactgaaggaatgaatactgaggagtgacaaatgataagtnggtgtatt 60
            ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 7822 gaaggagtctccactgaaggaatgaatactgag-agtgacaaatgataagtaggtgtatt 7764

                                                                        
Query: 61   ggtctttgccaaatgggtatactcaatatatttagagatatattaacaaaacatgcccag 120
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7763 ggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgcccag 7704

                                                                        
Query: 121  caatcgctnggatgcgatgcggacttangtaggtaaaacatcagatattaaaagtggcat 180
            |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7703 caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 7644

                                                       
Query: 181  gcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            |||||||||| || ||||||||||||| |||||||||||||||
Sbjct: 7643 gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccg 7601

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  266 bits (134), Expect = 3e-68
 Identities = 148/154 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctn 129
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 130  ggatgcgatgcggacttangtaggtaaaacatcagatattaaaagtggcatgcttaaaag 189
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                              
Query: 190  gngtnaaggcagctgccggcgtcgctccttgccg 223
            | || ||||||||||||| |||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccg 1241

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  234 bits (118), Expect = 9e-59
 Identities = 153/162 (94%), Gaps = 3/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 65   tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 123
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 124  tcgctnggatgcgatgcggactta-ngtaggtaaaacatcagatattaaaagtggcatgc 182
            ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                      
Query: 183  ttaaaaggngtnaaggcagctgccg-gcgtcgctccttgccg 223
            |||||||| || |||||||||||||  |||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccg 1548

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  145 bits (73), Expect = 7e-32
 Identities = 164/193 (84%), Gaps = 11/193 (5%)
 Strand = Plus / Minus

                                                                       
Query: 37  tgacaaatgataagtnggtgtattggtctttgccaaatgggtatactcaatatatttaga 96
           |||| |||||||||| |   |||| |||||| |||||| |||||||||||||| ||||  
Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta-- 746

                                                                       
Query: 97  gatatattaacaaaacatgcccagcaatcgctnggatgcgatgcgg-acttangta---- 151
             |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||    
Sbjct: 745 --tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaa 688

                                                                       
Query: 152 -ggtaaaacatcagatattaaaagtggcatgcttaaaaggngtnaaggcagctgccggcg 210
            | |||||||||||||||| ||| |||||||||||||||| || ||||||||||||| ||
Sbjct: 687 ggataaaacatcagatatt-aaattggcatgcttaaaaggtgtaaaggcagctgccgtcg 629

                        
Query: 211 tcgctccttgccg 223
           || ||||| ||||
Sbjct: 628 tcactcctcgccg 616

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  127 bits (64), Expect = 2e-26
 Identities = 116/132 (87%), Gaps = 7/132 (5%)
 Strand = Plus / Minus

                                                                        
Query: 98   atatattaacaaaacatgcccagcaatcgctnggatgcgatgcgg-acttangta----- 151
            ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 152  ggtaaaacatcagatattaaaagtggcatgcttaaaaggngtnaaggcagctgccggcgt 211
            | |||||||||||||||| ||| |||||||||||||||| || ||||||||||||| |||
Sbjct: 1536 gataaaacatcagatatt-aaattggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                        
Query: 212  cgctccttgccg 223
            | ||||| ||||
Sbjct: 1477 cactcctcgccg 1466

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 171  aaagtggcatgcttaaaaggngtnaaggcagctgccggcgtcgctcct 218
            |||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcct 1480

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 171  aaagtggcatgcttaaaaggngtnaaggcagctgccggcgtcgctcct 218
            |||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcct 1442

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 180    tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
              ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 107201

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 180   tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
             ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 29082

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1477

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1387

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 180      tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
                ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 28302344

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1519

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1471

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1509

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1508

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1292

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 180      tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
                ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 28284793

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1513

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 180  tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
            ||||||||||| || ||||||||||||| |||||||||| ||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 1422

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 186 aaaggngtnaaggcagctgccggcgtcgctccttgccg 223
           ||||| || ||||||||||||| |||||||||| ||||
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccg 56

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 180 tgcttaaaaggngtnaaggcagctgccggcgtcgctccttgccg 223
           ||||||||||   | ||||||||||||| |||||||||| ||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccg 92

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 85    aatatatttagagatatattaa 106
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    tatatttagagatatattaac 107
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 87    tatatttagagatatattaac 107
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 156     aaacatcagatattaaaagtg 176
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 156     aaacatcagatattaaaagtg 176
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 156    aaacatcagatattaaaagtg 176
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 87   tatatttagagatatattaac 107
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    tcagatattaaaagtggcat 180
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    tcagatattaaaagtggcat 180
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   tcagatattaaaagtggcat 180
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aatatatttagagatatatt 104
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    aatatatttagagatatatt 104
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 160    atcagatattaaaagtggcatgct 183
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,852,984
Number of Sequences: 3902068
Number of extensions: 1852984
Number of successful extensions: 136233
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135992
Number of HSP's gapped (non-prelim): 234
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)